SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13499

Length: 1099 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene13499 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytosine-specific methyltransferase n=6 Tax=Nicotiana RepID=A0A9R7_TOBAC	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Sma3	Cytosine-specific methyltransferase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA (cytosine-5-)-methyltransferase.	EC:2.1.1.37	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cysteine and methionine metabolism	00270		0.0	%
Sma3	Metabolic pathways	01100		0.0	%
Sma3	Glycylpeptide N-tetradecanoyltransferase.	EC:2.3.1.97	-	8.978e-06	-

Source	Gene names
Sma3	AT4g13610; AT4g14140; ATHIM; At4g08990; At4g13610; At5g49160; BrMET1a; BrMET1b; DMT901; DMT902; GSVIVT00003628001; GSVIVT00003629001; GSVIVT00035340001; K21P3.3; LesMET; MET1; MET1-2; METII; NtMET1; OJ1506_G02.17; OSJNBa0094F01.4; OsI_13909; OsI_25142; Os

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA (cytosine-5-)-methyltransferase activity	GO:0003886	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	negative regulation of flower development	GO:0009910	Biological Process	-
Sma3	zygote asymmetric cytokinesis in embryo sac	GO:0010069	Biological Process	-
Sma3	maintenance of DNA methylation	GO:0010216	Biological Process	-
Sma3	DNA methylation on cytosine within a CG sequence	GO:0010424	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	DNA (cytosine-5)-methyltransferase 1, eukaryote	IPR017198	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G08990.1	DNA (cytosine-5-)-methyltransferase family protein chr4:5764781-5770496 FORWARD LENGTH=1512	45%
RefSeq	Arabidopsis thaliana	NP_192638.1	DNA (cytosine-5-)-methyltransferase [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002325288.1	DNA methyltransferase [Populus trichocarpa]	45%

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
240	85	14			0.993533
252	85		14		0.993533
320	85		14		0.993533
462	83	16			0.994512
463		16		83	0.994512
464		16		83	0.994512
465	16			83	0.994512
574	83	16			0.994512
575		16		83	0.994512
576	16	83			0.994512
623		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain