SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13444

Length: 1987 nt

UniGene Fasta

>sp_v3.0_unigene13444
AATGGGGATAGCAACACGGCAAGAGCCGAGCGCATTTCGATTTGGGTTTGTTCTCAGACTGCAATTCTTGAGGGGGGTCAAAATTTCTCAGAGCTCACGCGCTTTGTTAATGGATTCTCAGTCCAATTTTCAATGCAAATTCCACGCATCTTCTTCATCTTTGTACATCAAATCTTTCAGACAAAATCAAAATCGAGAACAGCAATCCAGCGACTCTGTTCTTCTGAAATCCTGCGCGTGGTTTCGGGGGCTCTGGAAGTACAGACGGGTGGCTTTGAGAGTTCTTTAGCCAGGTACGGCATTGAAATTCTGTGCATAAGATCCTCATTAATGAATGATTCGTCTCCTTTTATCTTTAGCCGAAGGAGTAAACAGTAGACCCCCTTTTTTTATCTTGCTTTGGACGGAAACTCGAAGGGTTTCGATCCCGTGATCTCCTTATACAGACCCAACAATACTTTTCTCGGCGGGTAAGTGCTCCATGATGGGCACCAGTGGTGCTCCCAAGAGGTCCATCCGATCACCGCGGCAAAGGGCTAAAGTCCCAGGATGGGCTTCCTTTGATGCCCAACAGCTGGGTGGGGTTCCTAAGGCTGACGTGGACCCTTTCCCACCTTTTCCTCCAACCTCATCCTCTTCTAATCATCTCCAGAGAAAGCCAAGTCAGGGTTCTGTTATGGACAAGAATTATCTGAAAGAAAAAAATGATGTCTCGGCTGTGGTGGGGCACGAAAATATTTCCTTTACCTCTCCAAATTCTAGAGGCAAACCCTGGAAAGGATTTTCTCAATTGATAGAAAAAGTTGCTGTTAGGCCAGAGAAATTGGTTGATCCTTATCCTAATGCAATCCTGGCTAGCACTGCTATGCTGCAGGGCGTGACAGATGATGCAAATCAGAAAAAGGTTGCAGTAGAGAAACTGAAGGCCTTGTATGGTTGGGCTGATGAGAGCCTTATAGAGGATGTTTTAGTCGCTGTTAATTATGAGCTTGAACAAGCCTCTGCTTCCCTGGAGTCTATGGCTGTGATGACGTTGCCGGAGAATTCAGATCCCTTTGATGCATCTGAAGCTGTTGAGAATTCTCTACCTGATCAGAGTTCTGAAGGAAGTGGCCCTCTATTGCCTGAGTCCTTGGGTTTTGAAAATTTGCATGTGACAGTTGCAAGAGGACACATGCCAACTGCTCCCCCTGAGCCAGAATGGGAGGAAGATGATGTATATTTGAAACATCGAAAGGAAGCTTTGCGGATGCGTAGGGCTGCAAATCGACATTCAAGGGAAGCTGAAAGAGCTTATTTGCGAGGCGATCACAGCACTGCTAAGAATATTTCTCTAAAATCAAAAGAGGAACATTTGGCTGCAGATAAACTAAATGCTAAGGCAGCTGCAGAAATTCTTCAAATTAGAAATGAAAAACATAAGGACATTTGGAAGTTAGATCTACATGGGCTTCATGCAGCAGAAGCGGTGCAGGCCTTGGAATTGCGATTGGAAATGATTGAATACAATACTTCTGCCCTATCTGGTCCAGGAACAAATCAGCAAAGCAACTTCAATACAGAGCAACAATCTTCGGGATTATTATCCTTGCGAACTTGGAGGCCATCTGAACTGCAAGTCATAACAGGAGTTGGAGTCCACAGTCGTGGTGGTGCTGCTCTTCCTATTGCAATTAAAAACTTTCTTATCGATAAGGGGTACAAATTTAGTGAAGCTAGAGCAGGCGTGATTGCTGTTCGCCCTAAGTTCCGCTATAATTAGATTCCTCCTTTTAACTACCCAGCAGTTTGTATGTACATCAAAAATCAATCTGAAGATTTGTTGCCTGATTTAGGCCAATGCACTTACCCATTGCCGTGAATTATTCATTTTAATTGATTTCATTCCAGGAGAAAATTGTTTCCTGGTCGTTATTTGTATGTTAAAAATCCAGTGCGAAATTAAAAAAAATTAATTCTCTATACATTCATTTTTGGTTATAGATTC

Ace file of the UniGene sp_v3.0_unigene13444

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1771 domain containing protein	-	-	2.0e-11	32%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	42%

Source	Gene names
Sma3	OSJNBa0064D20.12; Os04g0442100; OsI_16026; OsJ_14921; P0076O17.10;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Protein of unknown function DUF482	IPR007434	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HGK1

Fln msg:

Fln protein: MMGTSGAPKRSIRSPRQRAKVPGWASFDAQQLGGVPKADVDPFPPFPPTSSSSNHLQRKPSQGSVMDKNYLKEKNDVSAVVGHENISFTSPNSRGKPWKGFSQLIEKVAVRPEKLVDPYPNAILASTAMLQGVTDDANQKKVAVEKLKALYGWADESLIEDVLVAVNYELEQASASLESMAVMTLPENSDPFDASEAVENSLPDQSSEGSGPLLPESLGFENLHVTVARGHMPTAPPEPEWEEDDVYLKHRKEALRMRRAANRHSREAERAYLRGDHSTAKNISLKSKEEHLAADKLNAKAAAEILQIRNEKHKDIWKLDLHGLHAAEAVQALELRLEMIEYNTSALSGPGTNQQSNFNTEQQSSGLLSLRTWRPSELQVITGVGVHSRGGAALPIAIKNFLIDKGYKFSEARAGVIAVRPKFRYN*

Protein Length: 428

Fln nts: AATGGGGATAGCAACACGGCAAGAGCCGAGCGCATTTCGATTTGGGTTTGTTCTCAGACTGCAATTCTTGAGGGGGGTCAAAATTTCTCAGAGCTCACGCGCTTTGTTAATGGATTCTCAGTCCAATTTTCAATGCAAATTCCACGCATCTTCTTCATCTTTGTACATCAAATCTTTCAGACAAAATCAAAATCGAGAACAGCAATCCAGCGACTCTGTTCTTCTGAAATCCTGCGCGTGGTTTCGGGGGCTCTGGAAGTACAGACGGGTGGCTTTGAGAGTTCTTTAGCCAGGTACGGCATTGAAATTCTGTGCATAAGATCCTCATTAATGAATGATTCGTCTCCTTTTATCTTTAGCCGAAGGAGTAAACAGTAGACCCCCTTTTTTTATCTTGCTTTGGACGGAAACTCGAAGGGTTTCGATCCCGTGATCTCCTTATACAGACCCAACAATACTTTTCTCGGCGGGTAAGTGCTCC_-_ATGATGGGCACCAGTGGTGCTCCCAAGAGGTCCATCCGATCACCGCGGCAAAGGGCTAAAGTCCCAGGATGGGCTTCCTTTGATGCCCAACAGCTGGGTGGGGTTCCTAAGGCTGACGTGGACCCTTTCCCACCTTTTCCTCCAACCTCATCCTCTTCTAATCATCTCCAGAGAAAGCCAAGTCAGGGTTCTGTTATGGACAAGAATTATCTGAAAGAAAAAAATGATGTCTCGGCTGTGGTGGGGCACGAAAATATTTCCTTTACCTCTCCAAATTCTAGAGGCAAACCCTGGAAAGGATTTTCTCAATTGATAGAAAAAGTTGCTGTTAGGCCAGAGAAATTGGTTGATCCTTATCCTAATGCAATCCTGGCTAGCACTGCTATGCTGCAGGGCGTGACAGATGATGCAAATCAGAAAAAGGTTGCAGTAGAGAAACTGAAGGCCTTGTATGGTTGGGCTGATGAGAGCCTTATAGAGGATGTTTTAGTCGCTGTTAATTATGAGCTTGAACAAGCCTCTGCTTCCCTGGAGTCTATGGCTGTGATGACGTTGCCGGAGAATTCAGATCCCTTTGATGCATCTGAAGCTGTTGAGAATTCTCTACCTGATCAGAGTTCTGAAGGAAGTGGCCCTCTATTGCCTGAGTCCTTGGGTTTTGAAAATTTGCATGTGACAGTTGCAAGAGGACACATGCCAACTGCTCCCCCTGAGCCAGAATGGGAGGAAGATGATGTATATTTGAAACATCGAAAGGAAGCTTTGCGGATGCGTAGGGCTGCAAATCGACATTCAAGGGAAGCTGAAAGAGCTTATTTGCGAGGCGATCACAGCACTGCTAAGAATATTTCTCTAAAATCAAAAGAGGAACATTTGGCTGCAGATAAACTAAATGCTAAGGCAGCTGCAGAAATTCTTCAAATTAGAAATGAAAAACATAAGGACATTTGGAAGTTAGATCTACATGGGCTTCATGCAGCAGAAGCGGTGCAGGCCTTGGAATTGCGATTGGAAATGATTGAATACAATACTTCTGCCCTATCTGGTCCAGGAACAAATCAGCAAAGCAACTTCAATACAGAGCAACAATCTTCGGGATTATTATCCTTGCGAACTTGGAGGCCATCTGAACTGCAAGTCATAACAGGAGTTGGAGTCCACAGTCGTGGTGGTGCTGCTCTTCCTATTGCAATTAAAAACTTTCTTATCGATAAGGGGTACAAATTTAGTGAAGCTAGAGCAGGCGTGATTGCTGTTCGCCCTAAGTTCCGCTATAATTAG___ATTCCTCCTTTTAACTACCCAGCAGTTTGTATGTACATCAAAAATCAATCTGAAGATTTGTTGCCTGATTTAGGCCAATGCACTTACCCATTGCCGTGAATTATTCATTTTAATTGATTTCATTCCAGGAGAAAATTGTTTCCTGGTCGTTATTTGTATGTTAAAAATCCAGTGCGAAATTAAAAAAAATTAATTCTCTATACATTCATTTTTGGTTATAGATTC

Fln Alignment:

Contig13444___VAVEKLKALYGWADESLIEDVLVAVNYELEQASASLESM-AVMTLPENSDPFDASEAVENSLPDQSSE---------GSGPLLPE-------------------------SLGFENLHVTVARGHMPTAPPEPEWEEDDVYLKHRKEALRMRRAANRHSREAERAYLRGDHSTAKNISLKSKEEHXXXXXXXXXXXXEILQIRNEKHKDIWKLDLHGLHAAEAVQALELRLEMIE----YNTSA-----------LSGPGTNQQSNFNTEQQSSGLLSLRTWRPSELQVITGVGVHSRGGAALPIAIKNFLIDKGYKFSEARAGVIAVRPKFRY
F6HGK1_______________IAFNKLKELYSWADNSLIEDIMAAVDNDIDKASTLLGAMVSTGSFEENKETSIVELNSTSGNPYENCKLQADNGVFLGNGTVLSELSSTIGDLLIDNNKGLTDECGSSGKNLFDDAADMTLILGRMKSIPIEPEWEEDDVYLSHRKDAIRFMRSASQHSRAATNAFLRGDHVSAKQFSLKAKDEWVKAERLNSKAANEILDIRN-SNNDLWKLDLHGLHAAEAVQALQEHLWKIETQMPFNRSVSPNRAKTKVGILRSPSLESFSCVDNEELDK-QWTLSRQRPTSLQVITGRGNHSRGQAALPTAVRSFLNEHGYRFEEARPGVIAVRPKFRH

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
148	87			12	0.992554
172	88		11		0.923564
175		11		88	0.923564
204	88	11			0.923564
235		57		42	1.0
249	14		85		0.993533
330		16		83	0.999991
334	16		83		0.999991
363	10		90		0.90298
1336	33	66			0.997452
1338	66		33		0.997452
1339	66		33		0.997452
1340	66		33		0.997452
1387			75	25	0.996473
1388		75	25		0.996473
1389			25	75	0.996473
1471		90		10	0.90298
1525		11		88	0.923564
1527		11		88	0.923564
1531		11	88		0.923564
1552	11		88		0.923564
1556		88		11	0.923564
1570	90		10		0.90298
1571	90			10	0.90298
1573	90		10		0.90298
1575		10		90	0.90298
1579		90	10		0.90298
1581		12	87		0.992554
1582			87	12	0.992554
1583	87		12		0.992554
1585		12		87	0.992554
1588	12			87	0.992554
1640	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain