SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13437

Length: 2515 nt

UniGene Fasta

>sp_v3.0_unigene13437
CGTCGTGACCTTGGCTGTCACTCATTTTCTTGGTGCTTGTTAAGACTACTAAAGAAACATTTTGATTGAATTTACTTTGAATCTCGACTCGTCTAAGTTACCCTAATGTTTGAATTTACATTGAATCTTGACTCGTCTAAGTTACCCTAATGTGTTTGTATGTTAGGATGTCTCAACAGAATCTCATGTCATAAATTGTTGCGGAGATTCAATTTTGATTTTCAGCTGAGAGCTTCCGCTTTTTCTTGGCCTGTGCGACCGCACGGCGTGCTCTCGATGGAGCCTTGCAGCTTGCCGCTGCCTAGAGAGAGCCGAGACGCACAGGGCAGTGTCCACTCAGCCGAATCTTATTTTTGTTGAACTTCAAACACGAACTAGGTTGAGTTAAGGGATAACGGTACCAGTAACAGCGGCGAAGGGCGGGAAGCGCATGCAGCCATGGCGATGGAAGAGAATAACCATAACAGCAACAGTATCGTCAACATCACTGCTAGTAGAGACAGTGTCGTTTTGATTCTTGATTTCGGCTCCCAGTATACCCATTTGATTACTCGCCGAATCCGGCAGCTTGCTGTATGCTCTGTGTGTCTCTCGGGCACTTCGCCCCTGTCGGCAATGGCGGCCCTCAATCCCTCGGTCATCATCCTCTCGGGGGGTCCTCACAGCGTTCACGAGGAGGGCGCCCCCTCACTGCCTGACGGATTCTTTGACTATGTGTGGGAGAAGGGGATTCATGTTCTGGGCATCTGCTATGGTCTGCAGCTCATCGTCAAGATGATGGGGGGTGAGGTCAAGCCTGCCGAATCCCAGGAGTACGGGAGAATGGAGGTCCGCATGCACGAGGGGTCGAAGCTCTATGGGGACATCTTCGTCGGAGGGACGCAGAATGTGTGGATGAGCCATGGGGACGAGGTCGTCAGATTGCCCGAGGGCTTCGTGGTCGTGGCCACAAGTCTGCAGAATGCCATAGCCGCCATTGAAAATCCCCACAAGGGATTATACGGCTTTCAGTACCATCCGGAGGTGACCCATTCAGTGCTTGGAATGGAGACGCTACGCCATTTTCTTTTCAGTGTTTGTGGCATCAAAGCTGATTGGAAACTTGAGGATGTGCTAGAAGAGCAAATTCAAACAGTGAGAGGAATGGTTGGACCAGTGGATCATGCCATCTGTGCATTGTCAGGTGGTGTGGACTCCACAGTTGCAGCGACTCTTGTACACAGAGCACTTGGAGACAGGCTTCACTGTGTTTTTGTGGACAACGGACTTTTGAGGTACAAGGAGAGAGAGCGTGTAATGGCCACATTTAAAAGTGATCTACATTTGCCTGTGACTTGTATTGATGCAACAGAACGTTTTCTTAATAAACTCAAAGGAGTAACAGACCCTGAAAGAAAACGGAAAATTATTGGAGGGGAATTCATCCACATTTTTGATGAATTCTCTTTAGATTTGGAAAAAAAACTGGGAAGGAAGCCAATGTTCTTGGTCCAGGGTACTCTGTATCCTGATGTAATTGAGTCGTGTCCACCACCTGGGAGTGGGAGAAATCACTCTCACACAATCAAGAGCCATCATAATGTTGGGGGGCTTCCAGAGGAAATGAATCTGAAACTTATTGAGCCTCTTAAGTGGCTTTTCAAAGATGAGGTACGAAAGCTAGGAGCAATTTTGAGTGTTCCTCAAGGGTTTCTTAAGAGGCATCCATTCCCTGGTCCTGGCTTAGCTGTACGTATTTTGGGTGATGTCACTGAAGGAAATGCCTTGGATACCATACGCCTGGTTGATGAGATCTTTATCAATTCAATCAAGGATGCTGGACTATATGATTCAATTTGGCAAGCTTTCGCAGTTTTTTTGCCAGTAAAGACTGTTGGTGTGCAAGGTGATAAGAGGACTCACTCACATGCAGTTGCATTGAGAGCAATCACTAGTGAGGATGGAATGACTGCAGACTGGTATCAATTTGATCCCAAGTTCCTTGCAGAGGTTTCTGCGAAGATTTGCAACAGTGTTCGTGGAGTAAATAGAATAGTTTATGACATAACCTCAAAACCTCCATCAACTGTAGAGTGGGAGTGATGTGCATAATACATAAATTGCATGATTTTGTATTATTTATTTGTGGTGAACCACAATTAAATAATACTATTTCCTGGATATCTTCATGGGAAAGGAATTTTTTCAGGAAACTTTTTGTAAAAATGTCGGCGTCTGAGTTTTCTACTGCTCCATTGTCAATACGTAGTAATGTATTTTGATTTTTTAAGGCTTTATTTAGTCTCAAAGTTCGTGCTTTATAAGAGAAACAAGCATACTAATGATCTAATTTTTTAACTTTATATCATTAGATTTTCAACAAAAAATTTTGAAGCTTTATGACTTTTTCTATCAAGTACAAAATGCTACACGATATATTTTAAAAGAGTGACCTTCAAAGGTCATCTAGTTGCCACATTTACAATCTATCATGCTTTTCAGAACTAGCATAATGATAAGATTATAACTTACAGAT

Ace file of the UniGene sp_v3.0_unigene13437

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative GMP synthase [Arabidopsis thaliana]	-	-	71%
FL-Next	sp=Anthranilate synthase component II; Porphyra purpurea. Plastid; Chloroplast.	-	-	26%
Sma3	Predicted protein	-	-	-

Source	Gene names
Sma3	PHYPADRAFT_104532;

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	GMP synthase (glutamine-hydrolyzing) activity	GO:0003922	Molecular Function	-
Sma3	GMP biosynthetic process	GO:0006177	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3		IPR000991	-	-
Sma3	GMP synthase, C-terminal	IPR001674	-	-
Sma3	GMP synthase, N-terminal	IPR004739	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3		IPR018318	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G63660.1	GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative chr1:23604127-23607080 REVERSE LENGTH=534	71%
RefSeq	Arabidopsis thaliana	NP_176553.1	GMP-synthase-C and glutamine amidotransferase domain-containing protein [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002304500.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P51362

Fln msg: your sequence is longer than subject: 548 - 189

Fln protein: MAMEENNHNSNSIVNITASRDSVVLILDFGSQYTHLITRRIRQLAVCSVCLSGTSPLSAMAALNPSVIILSGGPHSVHEEGAPSLPDGFFDYVWEKGIHVLGICYGLQLIVKMMGGEVKPAESQEYGRMEVRMHEGSKLYGDIFVGGTQNVWMSHGDEVVRLPEGFVVVATSLQNAIAAIENPHKGLYGFQYHPEVTHSVLGMETLRHFLFSVCGIKADWKLEDVLEEQIQTVRGMVGPVDHAICALSGGVDSTVAATLVHRALGDRLHCVFVDNGLLRYKERERVMATFKSDLHLPVTCIDATERFLNKLKGVTDPERKRKIIGGEFIHIFDEFSLDLEKKLGRKPMFLVQGTLYPDVIESCPPPGSGRNHSHTIKSHHNVGGLPEEMNLKLIEPLKWLFKDEVRKLGAILSVPQGFLKRHPFPGPGLAVRILGDVTEGNALDTIRLVDEIFINSIKDAGLYDSIWQAFAVFLPVKTVGVQGDKRTHSHAVALRAITSEDGMTADWYQFDPKFLAEVSAKICNSVRGVNRIVYDITSKPPSTVEWE*

Protein Length: 549

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCTTGGTGCTTGTTAAGACTACTAAAGAAACATTTTGATTGAATTTACTTTGAATCTCGACTCGTCTAAGTTACCCTAATGTTTGAATTTACATTGAATCTTGACTCGTCTAAGTTACCCTAATGTGTTTGTATGTTAGGATGTCTCAACAGAATCTCATGTCATAAATTGTTGCGGAGATTCAATTTTGATTTTCAGCTGAGAGCTTCCGCTTTTTCTTGGCCTGTGCGACCGCACGGCGTGCTCTCGATGGAGCCTTGCAGCTTGCCGCTGCCTAGAGAGAGCCGAGACGCACAGGGCAGTGTCCACTCAGCCGAATCTTATTTTTGTTGAACTTCAAACACGAACTAGGTTGAGTTAAGGGATAACGGTACCAGTAACAGCGGCGAAGGGCGGGAAGCGCATGCAGCC_-_ATGGCGATGGAAGAGAATAACCATAACAGCAACAGTATCGTCAACATCACTGCTAGTAGAGACAGTGTCGTTTTGATTCTTGATTTCGGCTCCCAGTATACCCATTTGATTACTCGCCGAATCCGGCAGCTTGCTGTATGCTCTGTGTGTCTCTCGGGCACTTCGCCCCTGTCGGCAATGGCGGCCCTCAATCCCTCGGTCATCATCCTCTCGGGGGGTCCTCACAGCGTTCACGAGGAGGGCGCCCCCTCACTGCCTGACGGATTCTTTGACTATGTGTGGGAGAAGGGGATTCATGTTCTGGGCATCTGCTATGGTCTGCAGCTCATCGTCAAGATGATGGGGGGTGAGGTCAAGCCTGCCGAATCCCAGGAGTACGGGAGAATGGAGGTCCGCATGCACGAGGGGTCGAAGCTCTATGGGGACATCTTCGTCGGAGGGACGCAGAATGTGTGGATGAGCCATGGGGACGAGGTCGTCAGATTGCCCGAGGGCTTCGTGGTCGTGGCCACAAGTCTGCAGAATGCCATAGCCGCCATTGAAAATCCCCACAAGGGATTATACGGCTTTCAGTACCATCCGGAGGTGACCCATTCAGTGCTTGGAATGGAGACGCTACGCCATTTTCTTTTCAGTGTTTGTGGCATCAAAGCTGATTGGAAACTTGAGGATGTGCTAGAAGAGCAAATTCAAACAGTGAGAGGAATGGTTGGACCAGTGGATCATGCCATCTGTGCATTGTCAGGTGGTGTGGACTCCACAGTTGCAGCGACTCTTGTACACAGAGCACTTGGAGACAGGCTTCACTGTGTTTTTGTGGACAACGGACTTTTGAGGTACAAGGAGAGAGAGCGTGTAATGGCCACATTTAAAAGTGATCTACATTTGCCTGTGACTTGTATTGATGCAACAGAACGTTTTCTTAATAAACTCAAAGGAGTAACAGACCCTGAAAGAAAACGGAAAATTATTGGAGGGGAATTCATCCACATTTTTGATGAATTCTCTTTAGATTTGGAAAAAAAACTGGGAAGGAAGCCAATGTTCTTGGTCCAGGGTACTCTGTATCCTGATGTAATTGAGTCGTGTCCACCACCTGGGAGTGGGAGAAATCACTCTCACACAATCAAGAGCCATCATAATGTTGGGGGGCTTCCAGAGGAAATGAATCTGAAACTTATTGAGCCTCTTAAGTGGCTTTTCAAAGATGAGGTACGAAAGCTAGGAGCAATTTTGAGTGTTCCTCAAGGGTTTCTTAAGAGGCATCCATTCCCTGGTCCTGGCTTAGCTGTACGTATTTTGGGTGATGTCACTGAAGGAAATGCCTTGGATACCATACGCCTGGTTGATGAGATCTTTATCAATTCAATCAAGGATGCTGGACTATATGATTCAATTTGGCAAGCTTTCGCAGTTTTTTTGCCAGTAAAGACTGTTGGTGTGCAAGGTGATAAGAGGACTCACTCACATGCAGTTGCATTGAGAGCAATCACTAGTGAGGATGGAATGACTGCAGACTGGTATCAATTTGATCCCAAGTTCCTTGCAGAGGTTTCTGCGAAGATTTGCAACAGTGTTCGTGGAGTAAATAGAATAGTTTATGACATAACCTCAAAACCTCCATCAACTGTAGAGTGGGAGTGA___TGTGCATAATACATAAATTGCATGATTTTGTATTATTTATTTGTGGTGAACCACAATTAAATAATACTATTTCCTGGATATCTTCATGGGAAAGGAATTTTTTCAGGAAACTTTTTGTAAAAATGTCGGCGTCTGAGTTTTCTACTGCTCCATTGTCAATACGTAGTAATGTATTTTGATTTTTTAAGGCTTTATTTAGTCTCAAAGTTCGTGCTTTATAAGAGAAACAAGCATACTAATGATCTAATTTTTTAACTTTATATCATTAGATTTTCAACAAAAAATTTTGAAGCTTTATGACTTTTTCTATCAAGTACAAAATGCTACACGATATATTTTAAAAGAGTGACCTTCAAAGGTCATCTAGTTGCCACATTTACAATCTATCATGCTTTTCAGAACTAGCATAATGATAAGATTATAACTTACAGAT

Fln Alignment:

Contig13437___VVLILDFGSQYTHLITRRIRQLAV-CSVCLSGTSPLSAMAALNPSVIILSGGPHSVHEEGAP-SLPDGFFDYVWEKGIHVLGICYGLQLIVKMMGGEVKPAESQEYGRMEVRMHEGSKLYGDIFVGGTQNVWMSHGDEVVRLPEGFVVVATSLQNAIAAIENPH-KGLYGFQYHPEVTHSVLGMETLRHFLFS
P51362_______________MILIIDNYDSFTYNLAQCVGELGHDVLVCRNDEIDVVKIKKLNPEKIIISPGPGKPTESGISLDVISSLAEY-----IPILGVCLGHQSIGYINGGSIIKVPKIMHGKTSQIYHDREDLFINLPNPFIATRYHSLIIDRANFPTNLAVTAWTDNNIIMACRHKHYKMLRGIQFHPESLWTVCGQQLLKNFLDS

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
286		88		11	0.923564
469	33		66		0.997452
472	66			33	0.997452
473		66		33	0.997452
824	66		33		0.997452
893	25		75		0.996473
898			25	75	0.996473
1265		87		12	0.992554
1266			87	12	0.992554
1329	12	87			0.992554
1330	12	87			0.992554
1334	12		87		0.992554
1425	80		20		0.995493
1457			75	25	0.996473
1458	25		75		0.996473
1459	33	33			0.997753
1461	33			33	0.997753
1462	66			33	0.997452
1714	14	85			0.993533
1715		85		14	0.993533
1716		85	14		0.993533
1717			14	85	0.993533
2038	88			11	1.0
2095	92		7		0.999664
2153		71	28		1.0
2181	14		85		0.993533
2182	83	16			0.994512
2220		42		57	1.0
2315	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain