SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13436

Length: 2952 nt

UniGene Fasta

>sp_v3.0_unigene13436
CGTCGTGACCTTGGCTGTCACTCCGTCTTGGCCTTTATTGTGGTCAATCTTCTGTGCATCGAAGGGATGTATAAAACAATTGACGTGTGGAATGCCTTGTGCAGGAAGAAACTTGGTGCTTCGCCATGGGTATAGCACATTAAAGACTGATCAATGCTATATTTAAACTGCAAGTTTTGGGACACTTGTGGTACTTACTTTAGAATTTGAGCAGTTGTTGCCACTCGAAGCTGGTCTGTTATCTGCATTGGAACGATTCTATCTGTTGGGAAATGTGGGAAGCATGGAATCTCTCTGCTGTGGATGCTATTGCTACAGAGAGCAGATTACATTATTATCTGGTGTTTGTTTCCAGCACTTTGGTGGTCTGTGCAAGTCTTATTTCACATCTGTTTTTGGCCATACTCACTAGCTACTCGTTCATCATGCAAGCATGGCAGAAGATCTAACATGAATGCCTGACACTAGTGCTGCTGCAGTGTGGTAAAATGTGAGATCGAAGGTATTCAATTTCAACAATTTATATTGTTTCAGTGGGGTTTAACTTCCAGTTAGAACCTTCCTCTTTGTGCATGTTGATCTGCATCCAGACATGGTTGTGGTCAATTTGTCTACTTTAGTAGTCGTACAACTTTGTCCACTGTGACAAAAGAAAAAGTAAATGAATGAAGAACAGCTGGGAAAGGTGTTGATCTGTTAATATTGTGAAGCATGGCTGGACGAGGTGCAGCAATGAGTTCTGCTATGTTGCAGTTTTAGCGGGCTCTTGTGCTTGCAATAAAAGGATAGTGGGAATGAAGGTGGTCTGATGGCTGTGAAAGCATTTTTCAGAATGCAACCTGATGTGCTTTGTATCCTAGGCTAGTGCAAAGACTTTAAGAAATACTTTTGATGCCTAACAAGGCAGTAAAGAGTTTGTAGTGGATGACAGAATATTTTCATTGTGATTGGTTTTAGAGCTAAATGTGTAGTTCTGGTTGGATGTTCATGGCTGCTATTCTCCAGCCACTTGGTGAATATCCTGTTGCCTCTTTAGCAGTAGATTTGTCAGATTTGTGCACAATCGAAGAATGGAGAGACAGAGACTGGCACTGTTTGGATCTTCCTCTTTGTGACATGGACAATATTCAACAGAATAAGAAATATCCGAGTTTTTATTTTTGAAGTCTATTACGTTACCTTTTCTAAGCACAAATGGAGCGGTATAAGATCATCAAGCAACTGGGGGATGGCACCTATGGAACTGTTTGGAAGGCTATTAATAGGCAGACCAATGACATAGTTGCCATTAAGAAAATGAAGAGGAAATTTTATTCTTGGCAGGAATGTATGAATCTTAGAGAAGTGAAGTCTCTACGCAAATTAAATCATCCCAGCATCATAAAGCTCAAGGAGGTTATTAGACAAAGTGACTATTTATATTTTGTATTTGAGTACATGGAGTACAATTTGTATCAAATAATAAAAGATAATGGCAAGCTATTCCCAGAGTCAAAAATACGCAATTGGTGCTTCCAAGTATTCCAAGGTCTTGCTTATATGCACCATCAAGGGTATTTTCACCGCGATCTTAAACCAGAAAATCTACTGGTGACTAAAGATGTTATTAAAATTGCTGATCTTGGTCTTGCTCGTGAGGTTTGCTCGGCACCCCCTTATACAGAATATGTCTCGACAAGATGGTATCGTGCTCCTGAAGTATTGCTTCAGTCACCATATTATAATAGTGCCACTGATATGTGGGCTATGGGGGCCATAATGTCAGAACTTTTCACCTTGCAACCCCTGTTTCCTGGTTCTAGTGAGGTAGATGAGATTTACAAGATCTGCAGTGTCATTGGCACTCCTGATCATCAGACATGGCCTGAAGGGCTAAAACTTGCAGCATCTATGAATTACCAATTTCCACAGTTTAAGTCCACCAATCTTTCAGTTTTAATACCAACTGCAAGCGAAGAAGCCATTGATCTTATGACTTCACTGTTGTCATGGGATCCAGCTAAGAGGCCAACTGCAGCTGAATCACTCCGGCATCCTTTCTTCCAGGCTTGCTTCTATGTACCCCCATCCCTACGAATGAGAGAAGCAGTTTTGAAGAACCAATCGCCAGGACAAGTAGGGAAAGGAGCTTTTGGGAAAAAGTCTGATAACCAAAATTTTGATTCTCCATCTTATGCAAAAGCATACAACAGTGTTCCTTTCAGAAAGAGGGATGGTTCTTTAAACCCTAATGTTCCACAAAAAGGAGTGATGGAAAAACAGAATGCAAGTCGTGAGCAGTATGTCATGAGCAATATCAAACAGGGTCACTTACAACATTTCAGCAATACGAAAGATCCTAAGTATGACGGTAACAATAAAGAAGCTATCAAGGATATATCTTCGTATTTATCACAAAGGCAAATGGGTAGGAGCAGTTTAGATTATTCGTTTGGTGCTGCAGGCAAGCGTAATTCAAAAGTTGGGCATATGGGAACATCTATGAATAAATCTTCATCCAATTGCAGAGGCATTTCTCTTCGTCCCTTGCATGTTAATAATCAAGTTACTTCCAGCTATCAAGGCAGATCATAAGCCAGGACTTGTCCATGGCAGCTTGTGCCTGGGGCATAGTTAGATGACATTTTTATGCAGACAGTCACCCGTAATCTGGACTTGAATTTCCTTTCTGAAATGACTTTGTATTGATATTGGAGTGTGGGGACAGACTGGTTTTGGCTTTTAGATCTTACGTCAGGATTTGTCTCTTTATTTCTATGTGAACACCTGAGAAGCAGTATTGAAGTCAGTTTAAAAGTTTATGCTGTCTCTAGCTAGTTTTTGTTTTTTTCGTGTACTTTTTCTACTTCCAAATCCAATATACGTTCACTTTATTTCAGTGGAGTGTCGCACTTCCCAGACATTTATAAATCAGAATATTTTAGTTCAATTTATCGAATGCAATTTTGACAT

Ace file of the UniGene sp_v3.0_unigene13436

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative serine/threonine protein kinase [Arabidopsis thaliana] gb\|AAK25900.1\|AF360190_1 putative kinase [Arabidopsis thaliana] gb\|AAK64081.1\| putative kinase [Arabidopsis thaliana] gb\|AEE84141.1\| putative serine/threonine protein kinase [Arabidopsis thal	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Mak, putative	-	-	7.273e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cyclin-dependent kinase.	EC:2.7.11.22	-	7.144e-12	-
Sma3	[RNA-polymerase]-subunit kinase.	EC:2.7.11.23	-	1.891e-16	-

Source	Gene names
Sma3	AT4g19110; At4g13020; At4g19110; At5g45430; At5g45430/MFC19.10; CDKA2; CDKF-3; CDKF-4; CHLREDRAFT_58843; GSVIVT00003204001; GSVIVT00008427001; GSVIVT00033772001; LF4; LOC_Os02g47220; LOC_Os03g63020; MAPK7; MHK; MICPUCDRAFT_21424; MICPUN_67483; OJ1111_E07.

Source	GOs	Term	Type	Identity
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	cyclin-dependent protein kinase activity	GO:0004693	Molecular Function	-
Sma3	MAP kinase activity	GO:0004707	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G19110.2	-	56%
RefSeq	Arabidopsis thaliana	NP_567574.1	putative serine/threonine protein kinase [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002304373.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR77

Fln msg:

Fln protein: MERYKIIKQLGDGTYGTVWKAINRQTNDIVAIKKMKRKFYSWQECMNLREVKSLRKLNHPSIIKLKEVIRQSDYLYFVFEYMEYNLYQIIKDNGKLFPESKIRNWCFQVFQGLAYMHHQGYFHRDLKPENLLVTKDVIKIADLGLAREVCSAPPYTEYVSTRWYRAPEVLLQSPYYNSATDMWAMGAIMSELFTLQPLFPGSSEVDEIYKICSVIGTPDHQTWPEGLKLAASMNYQFPQFKSTNLSVLIPTASEEAIDLMTSLLSWDPAKRPTAAESLRHPFFQACFYVPPSLRMREAVLKNQSPGQVGKGAFGKKSDNQNFDSPSYAKAYNSVPFRKRDGSLNPNVPQKGVMEKQNASREQYVMSNIKQGHLQHFSNTKDPKYDGNNKEAIKDISSYLSQRQMGRSSLDYSFGAAGKRNSKVGHMGTSMNKSSSNCRGISLRPLHVNNQVTSSYQGRS*

Protein Length: 461

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGTCTTGGCCTTTATTGTGGTCAATCTTCTGTGCATCGAAGGGATGTATAAAACAATTGACGTGTGGAATGCCTTGTGCAGGAAGAAACTTGGTGCTTCGCCATGGGTATAGCACATTAAAGACTGATCAATGCTATATTTAAACTGCAAGTTTTGGGACACTTGTGGTACTTACTTTAGAATTTGAGCAGTTGTTGCCACTCGAAGCTGGTCTGTTATCTGCATTGGAACGATTCTATCTGTTGGGAAATGTGGGAAGCATGGAATCTCTCTGCTGTGGATGCTATTGCTACAGAGAGCAGATTACATTATTATCTGGTGTTTGTTTCCAGCACTTTGGTGGTCTGTGCAAGTCTTATTTCACATCTGTTTTTGGCCATACTCACTAGCTACTCGTTCATCATGCAAGCATGGCAGAAGATCTAACATGAATGCCTGACACTAGTGCTGCTGCAGTGTGGTAAAATGTGAGATCGAAGGTATTCAATTTCAACAATTTATATTGTTTCAGTGGGGTTTAACTTCCAGTTAGAACCTTCCTCTTTGTGCATGTTGATCTGCATCCAGACATGGTTGTGGTCAATTTGTCTACTTTAGTAGTCGTACAACTTTGTCCACTGTGACAAAAGAAAAAGTAAATGAATGAAGAACAGCTGGGAAAGGTGTTGATCTGTTAATATTGTGAAGCATGGCTGGACGAGGTGCAGCAATGAGTTCTGCTATGTTGCAGTTTTAGCGGGCTCTTGTGCTTGCAATAAAAGGATAGTGGGAATGAAGGTGGTCTGATGGCTGTGAAAGCATTTTTCAGAATGCAACCTGATGTGCTTTGTATCCTAGGCTAGTGCAAAGACTTTAAGAAATACTTTTGATGCCTAACAAGGCAGTAAAGAGTTTGTAGTGGATGACAGAATATTTTCATTGTGATTGGTTTTAGAGCTAAATGTGTAGTTCTGGTTGGATGTTCATGGCTGCTATTCTCCAGCCACTTGGTGAATATCCTGTTGCCTCTTTAGCAGTAGATTTGTCAGATTTGTGCACAATCGAAGAATGGAGAGACAGAGACTGGCACTGTTTGGATCTTCCTCTTTGTGACATGGACAATATTCAACAGAATAAGAAATATCCGAGTTTTTATTTTTGAAGTCTATTACGTTACCTTTTCTAAGCACAA_-_ATGGAGCGGTATAAGATCATCAAGCAACTGGGGGATGGCACCTATGGAACTGTTTGGAAGGCTATTAATAGGCAGACCAATGACATAGTTGCCATTAAGAAAATGAAGAGGAAATTTTATTCTTGGCAGGAATGTATGAATCTTAGAGAAGTGAAGTCTCTACGCAAATTAAATCATCCCAGCATCATAAAGCTCAAGGAGGTTATTAGACAAAGTGACTATTTATATTTTGTATTTGAGTACATGGAGTACAATTTGTATCAAATAATAAAAGATAATGGCAAGCTATTCCCAGAGTCAAAAATACGCAATTGGTGCTTCCAAGTATTCCAAGGTCTTGCTTATATGCACCATCAAGGGTATTTTCACCGCGATCTTAAACCAGAAAATCTACTGGTGACTAAAGATGTTATTAAAATTGCTGATCTTGGTCTTGCTCGTGAGGTTTGCTCGGCACCCCCTTATACAGAATATGTCTCGACAAGATGGTATCGTGCTCCTGAAGTATTGCTTCAGTCACCATATTATAATAGTGCCACTGATATGTGGGCTATGGGGGCCATAATGTCAGAACTTTTCACCTTGCAACCCCTGTTTCCTGGTTCTAGTGAGGTAGATGAGATTTACAAGATCTGCAGTGTCATTGGCACTCCTGATCATCAGACATGGCCTGAAGGGCTAAAACTTGCAGCATCTATGAATTACCAATTTCCACAGTTTAAGTCCACCAATCTTTCAGTTTTAATACCAACTGCAAGCGAAGAAGCCATTGATCTTATGACTTCACTGTTGTCATGGGATCCAGCTAAGAGGCCAACTGCAGCTGAATCACTCCGGCATCCTTTCTTCCAGGCTTGCTTCTATGTACCCCCATCCCTACGAATGAGAGAAGCAGTTTTGAAGAACCAATCGCCAGGACAAGTAGGGAAAGGAGCTTTTGGGAAAAAGTCTGATAACCAAAATTTTGATTCTCCATCTTATGCAAAAGCATACAACAGTGTTCCTTTCAGAAAGAGGGATGGTTCTTTAAACCCTAATGTTCCACAAAAAGGAGTGATGGAAAAACAGAATGCAAGTCGTGAGCAGTATGTCATGAGCAATATCAAACAGGGTCACTTACAACATTTCAGCAATACGAAAGATCCTAAGTATGACGGTAACAATAAAGAAGCTATCAAGGATATATCTTCGTATTTATCACAAAGGCAAATGGGTAGGAGCAGTTTAGATTATTCGTTTGGTGCTGCAGGCAAGCGTAATTCAAAAGTTGGGCATATGGGAACATCTATGAATAAATCTTCATCCAATTGCAGAGGCATTTCTCTTCGTCCCTTGCATGTTAATAATCAAGTTACTTCCAGCTATCAAGGCAGATCATAA___GCCAGGACTTGTCCATGGCAGCTTGTGCCTGGGGCATAGTTAGATGACATTTTTATGCAGACAGTCACCCGTAATCTGGACTTGAATTTCCTTTCTGAAATGACTTTGTATTGATATTGGAGTGTGGGGACAGACTGGTTTTGGCTTTTAGATCTTACGTCAGGATTTGTCTCTTTATTTCTATGTGAACACCTGAGAAGCAGTATTGAAGTCAGTTTAAAAGTTTATGCTGTCTCTAGCTAGTTTTTGTTTTTTTCGTGTACTTTTTCTACTTCCAAATCCAATATACGTTCACTTTATTTCAGTGGAGTGTCGCACTTCCCAGACATTTATAAATCAGAATATTTTAGTTCAATTTATCGAATGCAATTTTGACAT

Fln Alignment:

Contig13436___MERYKIIKQLGDGTYGTVWKAINRQTNDIVAIKKMKRKFYSWQECMNLREVKSLRKLNHPSIIKLKEVIRQSDYLYFVFEYMEYNLYQIIKDNGKLFPESKIRNWCFQVFQGLAYMHHQGYFHRDLKPENLLVTKDVIKIADLGLAREVCSAPPYTEYVSTRWYRAPEVLLQSPYYNSATDMWAMGAIMSELFTLQPLFPGSSEVDEIYKICSVIGTPDHQTWPEGLKLAASMNYQFPQFKSTNLSVLIPTASEEAIDLMTSLLSWDPAKRPTAAESLRHPFFQACFYVPPSLRMREAVLKNQSPGQVGKGAFGKKSDNQNFD---------SPSYAKAYNSVPFRKRDGSLNPNVPQKGVMEKQNASREQYVMSNIKQG-HLQHFSNTKDPK-YDGNNKEAI-KDISSYLSQRQMGRSSLDYSFGAAGKRNSKVG
B8LR77_______________MDRYKVIKELGDGTYGIVWKAINRSTNEIVAIKKMKRKYYSWEECMSLREVKSLRKMNHPNIVKLKEVIRENDHLYFVFEYMECNLYQLMKDNDKLFSESKVRNWCFQLFQALAYMHQHGYFHRDLKPENLLVTKDVIKIADFGLAREVCSQPPFTEYVSTRWYRAPEVLLQSSSYGSAVDMWAMGAIMAELFTLRPLFPGSSEADEIYKICSVIGSPNHQTWSEGLRLATSMQYQFPQFISTHLSTLIPSASAEAIDLMASLCAWDPTKRPTAAESLKHPFFQACVYVPPSLRVREPISKQRFSANKGKRAPETKPGRQNFEVLANMKTSSNPSAAKMYHSV-------NSGPQRRLSVERQSQGTNQEQFFKTNGKQACYRLPIKNVEGPPLVDGNSVGFISKDVCA--SDRQIERQVSGRPPGTSTRVNVKAG

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
40	66		33		0.997452
42	0	33	33	33	0.998258
43			66	33	0.997452
44			66	33	0.997452
45			33	66	0.997452
46	33	33	33		0.997753
48	66			33	0.997452
103		33		66	0.997452
262	80		20		0.995493
277		25		75	0.996473
283			75	25	0.996473
285	75		25		0.996473
286		25		75	0.996473
348		33		66	0.997452
350		33		66	0.997452
667	66		33		0.997452
668			33	66	0.997452
705		33		66	0.997452
813	12		87		0.992554
814	12	87			0.992554
901	10	90			0.90298
926	50			50	1.0
1022	16	83			0.999991
1031	10			90	0.90298
1568	11	88			0.923564
1627	12		87		0.992554
1704		10		90	0.90298
1874	25		75		1.0
2121		10	90		0.90298
2125	90	10			0.90298
2155	90	10			0.90298
2284	85		14		0.993533
2323	12			87	0.992554
2324		87		12	0.992554
2676	83			16	0.994512
2681			16	83	0.994512
2757	16	83			1.0
2802	7			71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain