SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13422

Length: 2662 nt

UniGene Fasta

>sp_v3.0_unigene13422
CGTCGTGACCTTGGCTGTCACTCAACCATAAAGAAGCAACGGTGTGCTCTACAGACTGTCACAGTAAAGGCAATTCCTATGCTATTACGCCTGCCACAAACAGCTCTGCAGGCTATATATAATAAGCCAGGTCTGCAAGCAGTTATTAAGGAGATAAGGTGGATGAAGCCTGTTCCTTCTTCAGAGGCCCTGTTTCTTTAGGTTTTTGCAGACTGCCAGGCCTCTGTGGGCATCCTTGGTCTTCATTAACTAGTCTCTGCAATATCCTGCAAGATTCTACGAGAAATTATCTCTTGAAGCAGTCATCAAGAAGGAACTGCAGTATAATCGTCAACTTTGCGTGAGGCTGCAGAGAATTCAGGTCAGCTTGACTTCAATTGTCTTTGCATGAATTGGAACAGAGAACTAATGGCGATTTAGAAGGCTATTTTAAACTAGAGTTGGATCATCAGCTATTGTGGAAGGAAATATTTGTGTGGAAGATAAGAAGGAGGACACCAGTCCCTAACCAGTACCAGGGAAAACTGCAACTAGATCAGCCTTGAAGGGTTTTACGGTATAACGAGAGGTTAGATCAGCAGAAAATACTTACAGCAATGGACGTTTCCACAGGGATATTGATACTTGGGGCAATAGCAGCATATATTGCATGGTTTTTGACCATTGCAAATCGTTTTAGAGGTCCTAGAGTGTGGCCAGTGGTGGGAAGCCTGCCAGGACTGTTACAGAACAGGGAAAGAATGCATGACTGGATTGCAGACAATCTCCGGAAGGCAGGAGGAACATACCAGACATGCATCTGTGCCATCCCCTTCCTTGCAAGCAAACAAGGGCATGTAACGGTAACATGCAATACAAAAAATTTAGAGCATATTCTTCGCACACGTTTTGACAACTATCCGAAGGGGCCACAGTGGCAGGCAGCATTTCATGACCTGTTAGGGGATGGTATTTTCAACAGTGATGGTGAAACATGGTTGGTGCAGAGGAAGACTGCGGCTTTGGAGTTCACTACAAGGACCCTGAGAAATGCCATGGCTCGGTGGGTTACCCGGTCGATCAAGGGCCGACTATGGCCTATCTTGGCAGAGGCCCAAGAACTACACAGAGCTGTTGATTTGCAGGATCTTTTGCTCAGGCTTACATTTGATAACATCTGTGGTCTGGCATTTGGCAAGGATCCAGAGACATTGGCCCCAGGTCTTCCTCTTAATCCCTTTGCCACTGCATTTGACAATGCCACTGAGGCTACTCTGCAGCGTTTTATATTTCCTCAAGTGATATGGAGGCTTAATAAAATGCTGGGTTGGGGCATGGAGATTGAGCTTCGTCAAAGCGTTGCCAAGGTTGAAAAATACTTGTCTGAGATTATTAAACTGAGGCGAGTGGAATTGTCTATTCAGTCCCAAGGATCCAAAGGAGGAGATCAAGCTAAAATTTCTCAACTACAACAACCACATGATGATTTGTTGTCAAGGTTTATGAGGAAGAAGGATGGGGATGGCAAAGCCTACTCGGATACTTTCCTGCAAAATGTAGCTCTGAATTTCATTCTTGCTGGTAGGGATACTTCATCTGTGGCCATGAGTTGGTTTTTCTGGTTGATAATTCATAATCCCCGGGTTGAAGACAAAGTCATTGGGGAAATTTCCGAGGTTTTAACCAAAAGTAGGGGCAAGGACACTTCAAAATGGATTGAAGAGCCCTTGGTGTTTGAAGAGGTTGATGAATTGCTTTACCTAAAGGCTGCACTAACTGAGACTCTGAGGCTCTATCCCTCTGTTCCACAGGACTCTAAATATGTTCTCAAGGATGACACCTTACCTGATGGCACATTTGTCCCTGGGGGAACTGCTATAACCTACTCAATCTATTCAGTGGGGAGGTTGGAATCCATATGGGGGCCTGACTGCTTAGAGTTCAAGCCTGAGAGGTGGATACAAAATGGCCGGTTTGAACCTCCTCAAGACTCTTATAAGTTTGTTGCATTCAATGGAGGACCTCGGATCTGCCTGGGTAAGGACTTGGCCTATTTGCAGATGAAATCTATCGTTGCTGCAATTCTTCTGCGCCATCGAATTTCATTGGTTCCTGGTAATCCGGTTGAGCAGAAAATGTCACTGACTCTGTTTATGAAGCATGGCCTCAAGGTGTTTCTTGAACCGAGGAATCTTTGTGCGTACTAGAGGATATTAGTGAATTATGGGCTGCCCATTTACAGTTAAAATAACGTTAAAGATCAGACTTATTACTATCCTGAAGGGTTGGCAGCCTAGCTAGCTAAATGGTTGAACTATGCAACTAGGAGCAGTAGAATGAAGCTACCTGTTTCCGGTTTCTGTGGATGTCATTGGGAGCTTACATTCAAGTAGCTTATTTTCCGTGTGTTCGTGTGCTGCACTATCTGCAATTTAGACTGCAGATGTATGGCAAATTTCACAGAATAATATTTTGTAAGTGATGTATGGGAAATCAGATAGTTAATTTAGATCATTAAATCTTATTTTGAAGAAGGCATATTGTATTAAAGATTGCCTTCTTGTTTCTTAGCTTTTGAGATAGAAAAATTTCGTCTAGATAATTAGGTATTGAACATGCTTTTGCAATTCAGATTGCTGTATTTCATTATAAATAAAGAATTATTGAATTCATTGTTATTACC

Ace file of the UniGene sp_v3.0_unigene13422

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 monooxygenase CYP86A24 n=1 Tax=Glycine max RepID=Q2LAK8_SOYBN	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	Cytochrome P450	-	-	1.987e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Unspecific monooxygenase.	EC:1.14.14.1	-	4.757e-16	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid metabolism	00071	4.757e-16	%
Sma3	Steroid hormone biosynthesis	00140	4.757e-16	%
Sma3	Caffeine metabolism	00232	4.757e-16	%
Sma3	Tryptophan metabolism	00380	4.757e-16	%
Sma3	Arachidonic acid metabolism	00590	4.757e-16	%
Sma3	Linoleic acid metabolism	00591	4.757e-16	%
Sma3	Aminobenzoate degradation	00627	4.757e-16	%
Sma3	Retinol metabolism	00830	4.757e-16	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980	4.757e-16	%
Sma3	Drug metabolism - cytochrome P450	00982	4.757e-16	%
Sma3	Drug metabolism - other enzymes	00983	4.757e-16	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	4.757e-16	%
Sma3	Metabolic pathways	01100	4.757e-16	%

Source	Gene names
Sma3	A_IG005I10.21; At1g01600; At1g01600/F22L4_10; At1g13150; At1g24540; At1g34540; At1g63710; At2g45970; At3g56630; At4g00360; At5g08250; At5g23190; At5g58860; B0103C08-B0602B01.11; B1096A10.16; CYP86; CYP86A1; CYP86A19; CYP86A2; CYP86A20; CYP86A21; CYP86A22;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3		GO:0008393	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	fatty acid metabolic process	GO:0006631	Biological Process	-
Sma3	suberin biosynthetic process	GO:0010345	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G00360.1	CYP86A2, ATT1 cytochrome P450, family 86, subfamily A, polypeptide 2 chr4:160951-162778 FORWARD LENGTH=553	65%
RefSeq	Arabidopsis thaliana	NP_191946.1	cytochrome P450 86A2 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002304502.1	cytochrome P450, partial [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLC1

Fln msg:

Fln protein: MDVSTGILILGAIAAYIAWFLTIANRFRGPRVWPVVGSLPGLLQNRERMHDWIADNLRKAGGTYQTCICAIPFLASKQGHVTVTCNTKNLEHILRTRFDNYPKGPQWQAAFHDLLGDGIFNSDGETWLVQRKTAALEFTTRTLRNAMARWVTRSIKGRLWPILAEAQELHRAVDLQDLLLRLTFDNICGLAFGKDPETLAPGLPLNPFATAFDNATEATLQRFIFPQVIWRLNKMLGWGMEIELRQSVAKVEKYLSEIIKLRRVELSIQSQGSKGGDQAKISQLQQPHDDLLSRFMRKKDGDGKAYSDTFLQNVALNFILAGRDTSSVAMSWFFWLIIHNPRVEDKVIGEISEVLTKSRGKDTSKWIEEPLVFEEVDELLYLKAALTETLRLYPSVPQDSKYVLKDDTLPDGTFVPGGTAITYSIYSVGRLESIWGPDCLEFKPERWIQNGRFEPPQDSYKFVAFNGGPRICLGKDLAYLQMKSIVAAILLRHRISLVPGNPVEQKMSLTLFMKHGLKVFLEPRNLCAY*

Protein Length: 531

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCATAAAGAAGCAACGGTGTGCTCTACAGACTGTCACAGTAAAGGCAATTCCTATGCTATTACGCCTGCCACAAACAGCTCTGCAGGCTATATATAATAAGCCAGGTCTGCAAGCAGTTATTAAGGAGATAAGGTGGATGAAGCCTGTTCCTTCTTCAGAGGCCCTGTTTCTTTAGGTTTTTGCAGACTGCCAGGCCTCTGTGGGCATCCTTGGTCTTCATTAACTAGTCTCTGCAATATCCTGCAAGATTCTACGAGAAATTATCTCTTGAAGCAGTCATCAAGAAGGAACTGCAGTATAATCGTCAACTTTGCGTGAGGCTGCAGAGAATTCAGGTCAGCTTGACTTCAATTGTCTTTGCATGAATTGGAACAGAGAACTAATGGCGATTTAGAAGGCTATTTTAAACTAGAGTTGGATCATCAGCTATTGTGGAAGGAAATATTTGTGTGGAAGATAAGAAGGAGGACACCAGTCCCTAACCAGTACCAGGGAAAACTGCAACTAGATCAGCCTTGAAGGGTTTTACGGTATAACGAGAGGTTAGATCAGCAGAAAATACTTACAGCA_-_ATGGACGTTTCCACAGGGATATTGATACTTGGGGCAATAGCAGCATATATTGCATGGTTTTTGACCATTGCAAATCGTTTTAGAGGTCCTAGAGTGTGGCCAGTGGTGGGAAGCCTGCCAGGACTGTTACAGAACAGGGAAAGAATGCATGACTGGATTGCAGACAATCTCCGGAAGGCAGGAGGAACATACCAGACATGCATCTGTGCCATCCCCTTCCTTGCAAGCAAACAAGGGCATGTAACGGTAACATGCAATACAAAAAATTTAGAGCATATTCTTCGCACACGTTTTGACAACTATCCGAAGGGGCCACAGTGGCAGGCAGCATTTCATGACCTGTTAGGGGATGGTATTTTCAACAGTGATGGTGAAACATGGTTGGTGCAGAGGAAGACTGCGGCTTTGGAGTTCACTACAAGGACCCTGAGAAATGCCATGGCTCGGTGGGTTACCCGGTCGATCAAGGGCCGACTATGGCCTATCTTGGCAGAGGCCCAAGAACTACACAGAGCTGTTGATTTGCAGGATCTTTTGCTCAGGCTTACATTTGATAACATCTGTGGTCTGGCATTTGGCAAGGATCCAGAGACATTGGCCCCAGGTCTTCCTCTTAATCCCTTTGCCACTGCATTTGACAATGCCACTGAGGCTACTCTGCAGCGTTTTATATTTCCTCAAGTGATATGGAGGCTTAATAAAATGCTGGGTTGGGGCATGGAGATTGAGCTTCGTCAAAGCGTTGCCAAGGTTGAAAAATACTTGTCTGAGATTATTAAACTGAGGCGAGTGGAATTGTCTATTCAGTCCCAAGGATCCAAAGGAGGAGATCAAGCTAAAATTTCTCAACTACAACAACCACATGATGATTTGTTGTCAAGGTTTATGAGGAAGAAGGATGGGGATGGCAAAGCCTACTCGGATACTTTCCTGCAAAATGTAGCTCTGAATTTCATTCTTGCTGGTAGGGATACTTCATCTGTGGCCATGAGTTGGTTTTTCTGGTTGATAATTCATAATCCCCGGGTTGAAGACAAAGTCATTGGGGAAATTTCCGAGGTTTTAACCAAAAGTAGGGGCAAGGACACTTCAAAATGGATTGAAGAGCCCTTGGTGTTTGAAGAGGTTGATGAATTGCTTTACCTAAAGGCTGCACTAACTGAGACTCTGAGGCTCTATCCCTCTGTTCCACAGGACTCTAAATATGTTCTCAAGGATGACACCTTACCTGATGGCACATTTGTCCCTGGGGGAACTGCTATAACCTACTCAATCTATTCAGTGGGGAGGTTGGAATCCATATGGGGGCCTGACTGCTTAGAGTTCAAGCCTGAGAGGTGGATACAAAATGGCCGGTTTGAACCTCCTCAAGACTCTTATAAGTTTGTTGCATTCAATGGAGGACCTCGGATCTGCCTGGGTAAGGACTTGGCCTATTTGCAGATGAAATCTATCGTTGCTGCAATTCTTCTGCGCCATCGAATTTCATTGGTTCCTGGTAATCCGGTTGAGCAGAAAATGTCACTGACTCTGTTTATGAAGCATGGCCTCAAGGTGTTTCTTGAACCGAGGAATCTTTGTGCGTACTAG___AGGATATTAGTGAATTATGGGCTGCCCATTTACAGTTAAAATAACGTTAAAGATCAGACTTATTACTATCCTGAAGGGTTGGCAGCCTAGCTAGCTAAATGGTTGAACTATGCAACTAGGAGCAGTAGAATGAAGCTACCTGTTTCCGGTTTCTGTGGATGTCATTGGGAGCTTACATTCAAGTAGCTTATTTTCCGTGTGTTCGTGTGCTGCACTATCTGCAATTTAGACTGCAGATGTATGGCAAATTTCACAGAATAATATTTTGTAAGTGATGTATGGGAAATCAGATAGTTAATTTAGATCATTAAATCTTATTTTGAAGAAGGCATATTGTATTAAAGATTGCCTTCTTGTTTCTTAGCTTTTGAGATAGAAAAATTTCGTCTAGATAATTAGGTATTGAACATGCTTTTGCAATTCAGATTGCTGTATTTCATTATAAATAAAGAATTATTGAATTCATTGTTATTACC

Fln Alignment:

Contig13422___RFRGPRVWPVVGSLPGLLQNR--ERMHDWIADNLRKAGGTYQTCICAIPFLASKQGHVTVTCNTKNLEHILRTRFDNYPKGPQWQAAFHDLLGDGIFNSDGETWLVQRKTAALEFTTRTLRNAMARWVTRSIKGRLWPILAEAQELHRAVDLQDLLLRLTFDNICGLAFGKDPETLAPGLPLNPFATAFDNATEATLQRFIFPQVIWRLNKMLGWGMEIELRQSVAKVEKYLSEIIKLRRVELSIQSQGSKGGDQAKISQLQQPHDDLLSRFMRKKDGDGKAYSDTFLQNVALNFILAGRDTSSVAMSWFFWLIIHNPRVEDKVIGEISEVL-----TKSRGKDTSKWIEEPLVF--EEVDELLYLKAALTETLRLYPSVPQDSKYVLKDDTLPDGTFVPGGTAITYSIYSVGRLESIWGPDCLEFKPERWIQNGRFEPPQDSYKFVAFNGGPRICLGKDLAYLQMKSIVAAILLRHRISLVPG-NPVEQKMSLTLFMKHGLKVFLEPR
B8LLC1_______________RRRVPIQWPIIGMVPSLFIHLILNDTYDWLSRTLNKCGGTF---VFRGP---NKNWSAVITSDPANVEYILKTKFSSFPKGPTFTRAFRDFLGDGILNADGHFWASQRKTAVSEFNSSTSLGHAIESLQESVRGRLIPILADACSSCRIIDLQDVFMRFTFDNICNRAFGVEPCCLSPSLPSVPFAKAIEVAAEATALRFVTPKFVRRFMRRLGVGIDVKLQSALKIIDEFVMEIVSSRR------KQFISAGSDYKLP------EDLLSVFMKSRDEHGFLYSETLLRDVCVNFILAGRDTTSVALSWFFWLLLQHPSVEDKIMEEIYSILEARPNQKQEGND-------PVCFSKDELKQMHYLHACLSEAIRLYPPLPLDRKQVSENVVLPDGTPIKKGTVIFYIIYAMGRMESIWGNDCMEFKPERWLNKGVF-LSHPAPKFAVFNGGPRLCLGKDFAYLQMKYLAASVLYCFKVRAADSIESVESKLGVTLYMKGGFRVTLHAR

SNPs (tot: 4)

Position	A %	C %	T %	Probability
820		25	75	0.996473
2650	14		85	0.993533
2651		16	83	0.994512
2658		33	66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain