SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13370

Length: 2813 nt

UniGene Fasta

>sp_v3.0_unigene13370
CGTCGTGACCTTGGCTGTCACTCAAGAAGCAGAAGAGAAAGGGTCGGTGTTGGACCAAGAAGCGCTGGTAGTGGCGCCATGTTTCTCCGATGGAGAAAGGTAGGAGAACCGGCTTCGGCAGCCGATTGCATATCCCGGACCTGGAAAACCAAAGGCAGATCTCCTCCAAACCCCAATAGCAATAGAGCAGCTGCAGGGCTTTTGCAGGAAGGAGGAGGCGAAGAAGAGAGCAACAACGGGCGGGCTTCTGCGCAGGACAATTATTATTTCAGCAGCTTGAACCGTCCGCTGCCATTTTCGCCGAGGTTCAGCTACTGCCTGCACCTTGGTACAATTGCGGAGAAGTCCGCGCGCCCGAAGCGGAGGGAAGCCCTAGGGTTTCAAGAGCGCAGTAAATGGGACGGCGGACGCGACGATTTCCAGAATCGGCAGCTCAAAGCCAACGGGAATTGCCCTCGCTGCGGGAAACAAATGACGCTTTATTTCTCGACTGCTCCGCATCTCAATATTTTTTCTGAAAAACCCACTCTTTCCGGGCGGCTGGACAAGGGCAAGGGCTTTGAAACGGTAAATCTCTGTCCCAATTGCAAAACGGCGTATTATTTCCGGCCTCTCAAATTGGCTCCACTACAGGGGGATTTCGTTGAAGTAGGCGTACTTCATGGTAATAACAGTAATCGTAATAATAGGAGGAGGATTGTGAGGGACGATGATAGTGAAAATTGCACTAGTAGTAGAGGAATGGGCAGCAGGGGGAACTGCGATGGCGATTTAGGGGATGAAAGCAATGATGGCAATGTGCAGCTCTCTTTCTGGGAAACCTTACGGTCATGTGGAGTCTCGTACGGTGACCCCCCAGAGCATTGGCAGCCTCCTGGGAATGGACTTGCTATACCGCCCGCCGTTGCGCTTCAGTCGCCGCCTGGTCCTCCTTACCCGCCCAACATTAATCTGATCCGTTCGCATCTGGGGAACGGAGGGGGAGGTGGTGACAGCTCTGGCGGATCTGCCGGGGGAGGTTTTGGTTCGAGAGATGGTTGGGACGGGGGGGGCAATTTGGGGAAGGATTTGCCGACTCCTCGGAAAATTTGCAAGGGGCTCGACAAGTTTGTTGTCGGACAGGAGCGAGCGAAAAAGGTGCTTGCAGTAGCTGTGTACAATCACTATAAGCGGATTTTCCATGAGTCTTTGCAGAAAGGCGGTTGCAAGGGATTTTCATCGGATGGGCTTGGTGTATCAGACGCGAGTCCTCCCGGAGAAGAAACTGAGGAGAGTGATATGGTGGAACTGGAGAAAAGCAATGTTCTACTCTTGGGTCCTACTGGCTCAGGGAAGACACTGCTTGCAAAAACTCTGGCTAGGTTTGTGAATGTGCCCTTTGTTATCGCAGATGCAACAACTTTAACACAGGCAGGATATGTAGGGGAGGATGTGGAGTCTATTTTGTATAAACTACTCATGGTTGCCGATTTCAATGTTAAAGCAGCTCAGCAAGGCATTGTTTATATTGATGAAGTTGATAAAATCACTAAGAAGGCTGAAAGCCTCAATATTAGCAGGGATGTGTCAGGGGAGGGTGTTCAGCAGGCATTACTTAAAATGCTAGAAGGAACAGTTGTAAATGTTCCAGAAAAGGGAGCTCGCAAACATCCTCGTGGTGATCATATTCAGATCGATACAAAGGATATTCTCTTTATATGTGGCGGGGCTTTTGTGGATCTAGAGAAAACAATTTCTGAGAGACGGCAAGATTCTTCTATTGGCTTTGGAGCACCTGTACGAGCTAATATGAGGGCTGGTGGCCTGACAAATGCTGCGGTGACATCATCCTTGCTAGAGTCGGTTGAGAGTAGTGATCTTATTGCATATGGCTTAATACCAGAGTTCATTGGACGATTTCCTGTGCTTGTTAGCCTCTCAGCGTTGACTGAAGACCAACTTGTTCAGGTGCTCATGGAGCCTAAAAATGCACTAGGAAAGCAATACAAGAAAATGTTTGAGATGAACAATGTGAAGTTACATTTCACTGAGGGTGCCCTTAGGCAGATTGCACAGAAGGCAATGGTCAAGAGTACTGGAGCCCGTGGATTGCGTTCTATCCTCGAGAACATTTTGACAGATGCCATGTTTGAGATTCCGGATGCAAAAACAGGGCTGGATAAAATAGATGCTGTTGTCATTGATGAAGAGGTTATAGGATTGCCAGATTCACAGGGATGTGGAGCCAAAATACTTCGCGGCGAGGGTGCATTGGAACGTTATCTTGCAGAGCATAAACAAAAGGAATCTTTGGTTGTTACCGAAGGTTCTGATGAGGGCGAACCAGACATAGAAACTGAGCTTCCTTCCAGGGCCATGAGTATGTAATATTGTAGATTGACAAAATCCTTGTGTAGGATGGAAAAAAGATGTACTCTATTTTTTGTACAGCAGAGCCTGAGAATTTGTGTATAATCTGGACGTTATATAGTTATTTGTATGTGCCATTATTCACTTGTCTCTAGTGGGTCTCTTGATTGCATGCAATTTTAGGTTGCATGAATATGTATAGATTCTAGAAGCTTTCTTTATTTCATAGATTTTTTAGGAGGTAATTTATTTTACATGTCATATTTAACTGTATCAGACTTGAAATTAGTTCATTAGGTTGGCTAAATCCAGCTGCTAAATACGAGTAATAGAAAATTAAATGCTCATTGTATACTTTGGGATTTCATTAAAGCTGCATTTGTTATCTGCTTCATTGCTACATGCTGTCTTACATTCTGTCCAGATTTTGTGAAATTGAATTTTTCAAGTACAATTCCAAATTC

Ace file of the UniGene sp_v3.0_unigene13370

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent clp protease ATP-binding subunit clpx, putative n=1 Tax=Ricinus communis RepID=B9S1U1_RICCO	-	-	0.0	58%
FL-Next	tr=ATP-dependent clp protease ATP-binding subunit clpx, putative; Ricinus communis (Castor bean).	-	-	0.0	62%
Sma3	ATP-dependent clp protease ATP-binding subunit clpx, putative	-	-	5.606e-15	-

Source	Gene names
Sma3	At1g33360; At5g49840; At5g53350; CHLREDRAFT_196541; CLPX; ClpX; ClpX1; F10C21.5; GSVIVT00031954001; GSVIVT00035353001; GSVIVT00037259001; GSVIVT00037260001; GSVIVT00038492001; MICPUCDRAFT_29336; MICPUN_61722; OJ1057_D08.26; OSJNBa0053E05.18; OSTLU_23955;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Clp protease, ATP-binding subunit ClpX	IPR004487	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G33360.1	ATP-dependent Clp protease chr1:12092111-12095789 FORWARD LENGTH=656	59%
RefSeq	Arabidopsis thaliana	NP_564423.3	ATP-dependent Clp protease [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002321405.1	predicted protein, partial [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9S1U1

Fln msg: your sequence is longer than subject: 763 - 698

Fln protein: MFLRWRKVGEPASAADCISRTWKTKGRSPPNPNSNRAAAGLLQEGGGEEESNNGRASAQDNYYFSSLNRPLPFSPRFSYCLHLGTIAEKSARPKRREALGFQERSKWDGGRDDFQNRQLKANGNCPRCGKQMTLYFSTAPHLNIFSEKPTLSGRLDKGKGFETVNLCPNCKTAYYFRPLKLAPLQGDFVEVGVLHGNNSNRNNRRRIVRDDDSENCTSSRGMGSRGNCDGDLGDESNDGNVQLSFWETLRSCGVSYGDPPEHWQPPGNGLAIPPAVALQSPPGPPYPPNINLIRSHLGNGGGGGDSSGGSAGGGFGSRDGWDGGGNLGKDLPTPRKICKGLDKFVVGQERAKKVLAVAVYNHYKRIFHESLQKGGCKGFSSDGLGVSDASPPGEETEESDMVELEKSNVLLLGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADFNVKAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDHIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGGLTNAAVTSSLLESVESSDLIAYGLIPEFIGRFPVLVSLSALTEDQLVQVLMEPKNALGKQYKKMFEMNNVKLHFTEGALRQIAQKAMVKSTGARGLRSILENILTDAMFEIPDAKTGLDKIDAVVIDEEVIGLPDSQGCGAKILRGEGALERYLAEHKQKESLVVTEGSDEGEPDIETELPSRAMSM*

Protein Length: 764

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAAGCAGAAGAGAAAGGGTCGGTGTTGGACCAAGAAGCGCTGGTAGTGGCGCC_-_ATGTTTCTCCGATGGAGAAAGGTAGGAGAACCGGCTTCGGCAGCCGATTGCATATCCCGGACCTGGAAAACCAAAGGCAGATCTCCTCCAAACCCCAATAGCAATAGAGCAGCTGCAGGGCTTTTGCAGGAAGGAGGAGGCGAAGAAGAGAGCAACAACGGGCGGGCTTCTGCGCAGGACAATTATTATTTCAGCAGCTTGAACCGTCCGCTGCCATTTTCGCCGAGGTTCAGCTACTGCCTGCACCTTGGTACAATTGCGGAGAAGTCCGCGCGCCCGAAGCGGAGGGAAGCCCTAGGGTTTCAAGAGCGCAGTAAATGGGACGGCGGACGCGACGATTTCCAGAATCGGCAGCTCAAAGCCAACGGGAATTGCCCTCGCTGCGGGAAACAAATGACGCTTTATTTCTCGACTGCTCCGCATCTCAATATTTTTTCTGAAAAACCCACTCTTTCCGGGCGGCTGGACAAGGGCAAGGGCTTTGAAACGGTAAATCTCTGTCCCAATTGCAAAACGGCGTATTATTTCCGGCCTCTCAAATTGGCTCCACTACAGGGGGATTTCGTTGAAGTAGGCGTACTTCATGGTAATAACAGTAATCGTAATAATAGGAGGAGGATTGTGAGGGACGATGATAGTGAAAATTGCACTAGTAGTAGAGGAATGGGCAGCAGGGGGAACTGCGATGGCGATTTAGGGGATGAAAGCAATGATGGCAATGTGCAGCTCTCTTTCTGGGAAACCTTACGGTCATGTGGAGTCTCGTACGGTGACCCCCCAGAGCATTGGCAGCCTCCTGGGAATGGACTTGCTATACCGCCCGCCGTTGCGCTTCAGTCGCCGCCTGGTCCTCCTTACCCGCCCAACATTAATCTGATCCGTTCGCATCTGGGGAACGGAGGGGGAGGTGGTGACAGCTCTGGCGGATCTGCCGGGGGAGGTTTTGGTTCGAGAGATGGTTGGGACGGGGGGGGCAATTTGGGGAAGGATTTGCCGACTCCTCGGAAAATTTGCAAGGGGCTCGACAAGTTTGTTGTCGGACAGGAGCGAGCGAAAAAGGTGCTTGCAGTAGCTGTGTACAATCACTATAAGCGGATTTTCCATGAGTCTTTGCAGAAAGGCGGTTGCAAGGGATTTTCATCGGATGGGCTTGGTGTATCAGACGCGAGTCCTCCCGGAGAAGAAACTGAGGAGAGTGATATGGTGGAACTGGAGAAAAGCAATGTTCTACTCTTGGGTCCTACTGGCTCAGGGAAGACACTGCTTGCAAAAACTCTGGCTAGGTTTGTGAATGTGCCCTTTGTTATCGCAGATGCAACAACTTTAACACAGGCAGGATATGTAGGGGAGGATGTGGAGTCTATTTTGTATAAACTACTCATGGTTGCCGATTTCAATGTTAAAGCAGCTCAGCAAGGCATTGTTTATATTGATGAAGTTGATAAAATCACTAAGAAGGCTGAAAGCCTCAATATTAGCAGGGATGTGTCAGGGGAGGGTGTTCAGCAGGCATTACTTAAAATGCTAGAAGGAACAGTTGTAAATGTTCCAGAAAAGGGAGCTCGCAAACATCCTCGTGGTGATCATATTCAGATCGATACAAAGGATATTCTCTTTATATGTGGCGGGGCTTTTGTGGATCTAGAGAAAACAATTTCTGAGAGACGGCAAGATTCTTCTATTGGCTTTGGAGCACCTGTACGAGCTAATATGAGGGCTGGTGGCCTGACAAATGCTGCGGTGACATCATCCTTGCTAGAGTCGGTTGAGAGTAGTGATCTTATTGCATATGGCTTAATACCAGAGTTCATTGGACGATTTCCTGTGCTTGTTAGCCTCTCAGCGTTGACTGAAGACCAACTTGTTCAGGTGCTCATGGAGCCTAAAAATGCACTAGGAAAGCAATACAAGAAAATGTTTGAGATGAACAATGTGAAGTTACATTTCACTGAGGGTGCCCTTAGGCAGATTGCACAGAAGGCAATGGTCAAGAGTACTGGAGCCCGTGGATTGCGTTCTATCCTCGAGAACATTTTGACAGATGCCATGTTTGAGATTCCGGATGCAAAAACAGGGCTGGATAAAATAGATGCTGTTGTCATTGATGAAGAGGTTATAGGATTGCCAGATTCACAGGGATGTGGAGCCAAAATACTTCGCGGCGAGGGTGCATTGGAACGTTATCTTGCAGAGCATAAACAAAAGGAATCTTTGGTTGTTACCGAAGGTTCTGATGAGGGCGAACCAGACATAGAAACTGAGCTTCCTTCCAGGGCCATGAGTATGTAA___TATTGTAGATTGACAAAATCCTTGTGTAGGATGGAAAAAAGATGTACTCTATTTTTTGTACAGCAGAGCCTGAGAATTTGTGTATAATCTGGACGTTATATAGTTATTTGTATGTGCCATTATTCACTTGTCTCTAGTGGGTCTCTTGATTGCATGCAATTTTAGGTTGCATGAATATGTATAGATTCTAGAAGCTTTCTTTATTTCATAGATTTTTTAGGAGGTAATTTATTTTACATGTCATATTTAACTGTATCAGACTTGAAATTAGTTCATTAGGTTGGCTAAATCCAGCTGCTAAATACGAGTAATAGAAAATTAAATGCTCATTGTATACTTTGGGATTTCATTAAAGCTGCATTTGTTATCTGCTTCATTGCTACATGCTGTCTTACATTCTGTCCAGATTTTGTGAAATTGAATTTTTCAAGTACAATTCCAAATTC

Fln Alignment:

Contig13370___LNRPLPFSPRFSYCLHLGTIAEKSARPKRREALGFQERSKWDGGRDDFQN----RQLKANGNCPRCGKQMTLYFST------APHLNIFSEKPTLSGRLDKGKGFETVNLCPNCKTAYYFRPLKLAPLQGDFVEVGVLHGXXXXXXXXXXXXXDDDSENCTSSRGMGSRGNCDGDLGDESN--DGNVQLSFWETLRSCGVSYGDPPEHWQPP---GNGLAI--PPAVALQSXXXXXXXXNINLIRSHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPTPRKICKGLDKFVVGQERAKKVLAVAVYNHYKRIFHESLQKGGCKGFSSDGLGVSDASPPGEETEESDMVELEKSNVLLLGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADFNVKAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDHIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGGLTNAAXXXXXXXXXXXXDLIAYGLIPEFIGRFPVLVSLSALTEDQLVQVLMEPKNALGKQYKKMFEMNNVKLHFTEGALRQIAQKAMVKSTGARGLRSILENILTDAMFEIPDAKTGLDKIDAVVIDEEVIGLPDSQGCGAKILRGEGALERYLAEHKQKESLVVTEGSDEGEPDIETELPSRAMSM
B9S1U1_______________LHRWMPVSTISTYFNYLNIGCNR----RRESLIGLQERYKWDGNGDGNNNNSDVRKIRAESNCPRCSKHMDLLFSNRHFPSPSSNNNPNLDSTSNNNNCNTNNTYQAVNFCPSCKTAYYFRPYKITPLQGSFIEIGRVGNNSP----------NNKSRNRIGSLTKQHPSTEDLEEGFDSNAISGRLRASFWNTLRSYA---GDPPENWPPPPLNGNGLAVHTPPGPPFAP--------GVNVIRAN---GPGGGGGGEGGGEKSGGGGGGGWGGSNLGKDLPTPKEICRGLDKFVIGQDRAKKVLSVAVYNHYKRIYHASLKKG-----PGEESGSSDA------VDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATALTQAGYVGEDVESILYKLLSVAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGGVTNAAVTSSLLESVESADLIAYGLIPEFIGRFPILVSLSALTEDQLVRVLTEPKNALGKQYKKLFSMNKVKLHFTEKALRLIAKKAMAKNTGARGLRAILESTLTEAMYEIPDVKTGSDRVDAVIVDEESIGSVNASGHGGKILRGDGALESYLAEYKLKESAENVEAGDTELQDGEPEVSSRAMSM

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
512	12			87	0.992554
513		12		87	0.992554
514	12			87	0.992554
515		87		12	0.992554
571	83		16		0.994512
671	80		20		0.995493
800			10	90	0.90298
1807	80		20		0.995493
2579	88			11	0.923564
2581	14			85	0.993533
2582	14			85	0.993533
2583			16	83	0.994512
2623		12		87	0.992554
2646		14	85		0.993533
2699	16		83		0.994512
2700		16		83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain