SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13364

Length: 1012 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene13364

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phototropic-responsive NPH3 family protein [Arabidopsis thaliana] sp\|Q9SA69.1\|Y1301_ARATH RecName: Full=BTB/POZ domain-containing protein At1g03010 gb\|AAD25808.1\|AC006550_16 F10O3.17 [Arabidopsis thaliana] gb\|AEE27514.1\| Phototropic-responsive NPH3 family	-	-	0.0	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	Transposon protein, putative, Mutator sub-class, expressed	-	-	5.229e-13	-

Source	Gene names
Sma3	5; At1g03010; At1g30440; At2g23050; At2g23050/F21P24.11; At2g47860; At3g08570; At3g08660; At3g26490; At5g03250; At5g48800; At5g67440; At5g67440/K8K14.18; B1394A07.4; F10O3.17; F15A17_280; F17O14.13; F17O14.4; F26G16.2; GSVIVT00008407001; GSVIVT00013470001

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	NPH3	IPR004249	-	-
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3		IPR012287	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3		IPR014778	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G03010.1	Phototropic-responsive NPH3 family protein chr1:693480-696188 FORWARD LENGTH=634	71%
RefSeq	Arabidopsis thaliana	NP_171800.1	Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002320640.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: your sequence is shorter than subject: 261 - 648

Fln protein: KLGDLDYSILIWRAHFQIQNAVIKVSKLMDSYLAEIAPDSNLSVSKLVALAEALPDHARPVDDGLYRAIDIFLKAHPNIKEAERNKLCKLMDCQRLSHEACSHAAQNERLPVQLAVQVLYFEQLKLRNAMNGSCGPEHLIPSSNYPQRLSSGAPSAAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVKSTSTHKFLHSFSKKLGKLFRPRDGNGNNLMLNNNNNNLCGKAPSDARHILSRRRRHSIS*

Protein Length: 262

Fln nts: ATAAGCTTGGAGACCTTGATTACAGCATTCTGATTTGGAGAGCCCACTTCCAAATACAGAATGCTGTAATCAAGGTCTCCAAGCTTATGGATAGCTATCTCGCTGAGATTGCACCGGATTCTAACTTATCAGTTTCCAAATTAGTTGCACTAGCTGAGGCTCTGCCTGATCATGCTCGTCCGGTTGACGATGGTCTCTACAGAGCTATTGATATCTTTCTCAAGGCGCATCCAAACATAAAGGAAGCAGAACGCAACAAACTCTGCAAACTAATGGACTGCCAGAGGCTCTCCCACGAAGCCTGCTCTCATGCAGCACAGAACGAACGCCTCCCAGTGCAGCTAGCAGTCCAAGTCCTTTACTTCGAGCAGCTGAAACTTCGCAACGCCATGAATGGAAGCTGCGGGCCTGAACACCTGATCCCCAGTTCCAACTACCCCCAGAGGCTCAGCAGCGGGGCTCCCAGCGCCGCCATTTCTCCCAGGGACAACTACGCCTCAGTCCGAAGAGAAAACCGAGAGCTGAAGCTGGAAGTGGCGAGAATGAGGATGAGGTTGACAGATCTGGAGAAAGACCACGTGTCCATGAAACAGGAGCTCGTCAAGTCCACATCAACACACAAATTCTTGCACTCATTTTCCAAGAAGTTGGGAAAGCTGTTTCGACCCAGAGACGGTAACGGCAACAATCTCATGCTCAATAACAACAACAACAATCTCTGCGGGAAGGCGCCATCTGATGCTCGCCATATCCTCTCCAGAAGAAGGCGCCACTCCATTTCTTGA___ATGCTATCTTTGGCTTTGGAATGGGCAATGTACAGTGCTAGGTTTACCTAAGGGCCTGGATTTAGGTTTAGTTGATTTGGTTAGCTACCTGCTGTTGGATTGAATAGCCATTGTAATATTTTGGAAGTTGCAGCCAAGAGAGCACTCCATTCTAATAATTATTGTGATGTTTAGCAACATAAATATAAAGGGTGTATTAAAAGGCTAATATATATGTATTTTTAGAC

Fln Alignment:

Contig13364___VIKVSKLMDSYLAEIAPDSNLSVSKLVALAEALPDHARPVDDGLYRAIDIFLKAHPNIKEAERNKLCKLMDCQRLSHEACSHAAQNERLPVQLAVQVLYFEQLKLRNAMNGS---------CGPEHLIPSSNYPQRLSSGAPSAAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVK----------STSTHKFLHSFSKKLGKLFR
B8LPD8_______________IMMVGKLVDGYLAEVAPDGNLKPAKFHSLADALPDYARLFDDGLYRAIDIYLKAHPWVTEEEREKICSIMDCQKLTLEACTHAAQNERLPLRVVVQVLFFEQLQLRNAIAGAFLAADGTDPSRPSHINPATDL------AMPGPAVG-GDGWNNALQENHVLRIDMDTMRSRVHELERECSTMRHEIEKIDKPKGARGSSTGSGSAWNFMSKKFGCKFK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
513	85			14	0.993533
514	71		14	14	0.984337
515		71	28		1.0
516		71	28		1.0
674		55		44	1.0
969	25			75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
702	715	AAC AAC AAC AAC AA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain