SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13353

Length: 337 nt

UniGene Fasta

>sp_v3.0_unigene13353
CTCCCACCTCTCCTGTTATAAATAGGATTCAGTCCTTGCTTCCATGGAGTGCCTGAGTTCCAGATTTTCTGTATTCTTTTTCTTTCTGCTTGCGTGAGGATTGTGTTACGATATTTACCTTCATGGCTGTCTACGTATCAGGAGCTTCAATGATGATGGACGAGGAAGCAAAAATTGAAGCAGAAGTAGCAGAGGTCCAAACATGGTGGAACTCAGAGCGATTTCGCCTCACACAGAGGCCATACACTGCAAAGGATGTAGTTCGTCTGAGAGGCACCATGCGCCAGAGCTATGCGTCCAATGAGCTGGCCAAAAAGCTATGGAGACACTCAAAACC

Ace file of the UniGene sp_v3.0_unigene13353

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Isocitrate lyase n=1 Tax=Pinus taeda RepID=Q41084_PINTA	-	-	1.0e-23	78%
FL-Next	sp=Isocitrate lyase; Pinus taeda (Loblolly pine).	-	-	0.0	95%
Sma3	Isocitrate lyase	-	-	2.761e-38	-

Source	ECs	Term	Type	e value	Identity
Sma3	Isocitrate lyase.	EC:4.1.3.1	-	1.143e-28	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glyoxylate and dicarboxylate metabolism	00630		1.143e-28	%
Sma3	Metabolic pathways	01100		1.143e-28	%

Source	Gene names
Sma3	AT3G21720; At3g21720; ICL; ICL 12; ICL 8; ICL1; ICL2; MSD21.3; OSJNBa0007H12.39; Os07g0529000; OsI_26281; OsJ_24528; PHYPADRAFT_137303; PHYPADRAFT_189731; POPTRDRAFT_562291; POPTRDRAFT_741351; RCOM_1362920;

Source	GOs	Term	Type	Identity
Sma3	glyoxysome	GO:0009514	Cellular Component	-
Sma3	isocitrate lyase activity	GO:0004451	Molecular Function	-
Sma3	glyoxylate cycle	GO:0006097	Biological Process	-
Sma3	tricarboxylic acid cycle	GO:0006099	Biological Process	-
Sma3	carboxylic acid metabolic process	GO:0019752	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Isocitrate lyase/phosphorylmutase	IPR000918	-	-
Sma3	Isocitrate lyase	IPR006254	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G21720.1	ICL isocitrate lyase chr3:7652789-7655873 REVERSE LENGTH=576	3.0e-19	69%
RefSeq	Arabidopsis thaliana	NP_188809.2	isocitrate lyase [Arabidopsis thaliana]	3.0e-19	69%
RefSeq	Populus trichocarpa	XP_002327847.1	predicted protein [Populus trichocarpa]	6.0e-19	67%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q41084

Fln msg: Distance to subject end: 501 aas, your sequence is shorter than subject: 71 - 573

Fln protein: MAVYVSGASMMMDEEAKIEAEVAEVQTWWNSERFRLTQRPYTAKDVVRLRGTMRQSYASNELAKKLWRHSK

Protein Length: 72

Fln nts: CTCCCACCTCTCCTGTTATAAATAGGATTCAGTCCTTGCTTCCATGGAGTGCCTGAGTTCCAGATTTTCTGTATTCTTTTTCTTTCTGCTTGCGTGAGGATTGTGTTACGATATTTACCTTC_-_ATGGCTGTCTACGTATCAGGAGCTTCAATGATGATGGACGAGGAAGCAAAAATTGAAGCAGAAGTAGCAGAGGTCCAAACATGGTGGAACTCAGAGCGATTTCGCCTCACACAGAGGCCATACACTGCAAAGGATGTAGTTCGTCTGAGAGGCACCATGCGCCAGAGCTATGCGTCCAATGAGCTGGCCAAAAAGCTATGGAGACACTCAAAACC

Fln Alignment:

Contig13353___MAVYVSGASMMMDXXXXXXXXXXXXQTWWNSERFRLTQRPYTAKDVVRLRGTMRQSYASNELAKKLWRHSK
Q41084_______________MAVYVQGASMMMDEEAKIEAEVAEVQTWWNSERFRLTQRPYTAKDVVRLRGTMRQSYASNELAKKLWRTLK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
209			90	10	0.90298
330	33		33		0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain