SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13312

Length: 2730 nt

UniGene Fasta

>sp_v3.0_unigene13312
CGTCGTGACCTTGGCTGTCACTCATCTTTAGTGAATCGATAAAATGCATAAGCTCTTATAAATAGAACGTGACGCAGTCGGCCAAATTAAAAATGAAGTGACCCACATTCTCATCGATCTTTTTCTTGGTTCTGGCCTATGGTAATCGCAGCCGCCGCCGGAGGCGCAGGCAGCCATGGATCCTTCTCGTGCTTTTGTCAAGAATGCGAAGCGAGTTATAATCAAGGTTGGCACTGCTGTCGTCACTAGAGCTAATGGAGGGCTTGCCTTGGGTCGCCTTGGTTCCTTATGTGAGCAGGTTAAAGAACTGATGTCAGTCGGCCTTGAGGTTATACTTGTGACCTCAGGTGCAGTAGGGATTGGTCGGCAGAGGCTTCGCTACCAAAGACTGATTAATAGCAGTTTTGTAGATCTCCAGAAACCACAAGTTGAACTTGATGGAAAGCCATGTGCTGCTGTTGGCCAGAGTGGCCTGATGGCTCTGTACGACAGTCTATTTAGCCAGCTGGATGTTGCTTCTTCCCAGCTTCTTGTAACTGACAATGAGTTCAAAGACCCAGAGTTCAGAAGACAACTGAATCATACTGTAACTTCTTTGCTGGAGCTCCGGGTAGTTCCAATTTTCAATGAAAATGATGCAGTTAGTACAAGGAAAGCTCCATATGAGGATGCTACTGGTATTTTCTGGGACAATGATAGTTTGGCTGCTCTACTGGCCCTTGAGTTGAGAGCTGATCTTCTAATTCTTCTAAGTGATGTGGATGGCCTTTACAGTGGTCCTCCAAGTGATCCTCGCTCAAAACTTATACATACTTACGTAAAGGAGAAACATGACGAGACAATCACATTTGGTGATAAGTCTAGGGTTGGACGGGGTGGAATGACTGCTAAAGTAAAAGCTGCTTGTCATGCTGCTGAAGCTGGCATTCCAGTTGTTATTACCAGTGGGTTTGCTGCTGATGGAGCTTTGAGAGTGCTGCAAGGGGAGCGTTTAGGCACTCTTTTCCATAAGGATGCACATTTGTGGTTTTCAGTCAAAGAGTACAGTGCCCGGCAGATGGCAGTTAGTGCGAGAGATGCTAGTCGCTGCTTGCAGGTTCTTTCTTCCTCTGATCGGAGGAAGATTCTACTAGATGTGGCAGATGCTCTGGAAGCCAATGAAGAGCTAATCAGGAGAGAGAATGAATCTGATGTTTGTGTTGCAAAAGAAACAAGAATTGCAGACGCCCTGGTTTCTCGATTAACTCTAAAACCTGGAAAGATTGCAGGATTGGCAAAGTCAATCAGAGTTCTTGCAGACATGAATGACCCAATTGGTGAAGTGCTGAAAAGGACAGAGCTTGCAGATGGTCTAATTCTAGAGAAGACAACCAGTCCCTTAGGTGTGCTGCTTATAATTTTTGAATCCCGACCAGATGCTCTGGTTCAGATAGCTTCATTAGCAATCCGGAGTGGAAATGGGCTGCTTCTAAAAGGGGGCAAAGAAGCAGCTCGATCAAATGCGATTTTGCATAAGATTATTACTGAAGTATTGGCCAAATCTGTGGGATCAGAGCTGATTGGCCTTGTTAATTCTAGAGATGAAATTCCAGATCTACTAAAGCTGGATGATGTTATAGATCTTGTCATTCCAAGAGGAAGTAATAAGCTGGTGTCAAAAATAAAGGAGTCAACAAAAATTCCAGTGCTTGGTCATGCTGATGGTGTTTGCCATGTATATGTGGACAAAGCAGCTGATTTGGATATGGCCGAAAGAATTGTTTTAGATGCAAAAACTGATTATCCTGCCGCTTGTAATGCAATGGAAACTCTGCTTGTACATGAAGCAGTTATGAAGACTGGTGGCCTTGACAGACTTGTTTTGGCATTACAAGCAGCAGGTGTTAGATTGTATGGTGGCTTAAAGGCTGCTGATAGGTTGAAGTTACCCAAGGCCAGTAGTTTTCATCATGAATACAGTTCGATGGCATGCACTGTAGAAATAGTAAAGGATGTTTTGGGGGCTATTGATCATATTCACGAGCATGGAAGTGCTCACACAGACTGTATAATAACTGAAGATCATGATGTTGCGGAGGTTTTCTTACGCCAGGTAGACAGTGCTGCTGTATTTCATAATGCGAGTACACGCTTTTGTGATGGAGCTCGCTTTGGTCTTGGTGCTGAGGTTGGAATAAGTACAAGCAGGATACATGCTCGTGGACCTGTAGGAGTTGAAGGGCTTTTAACAACCAGATGGTTGTTGAGAGGTAATGGGCAAGTGGTAAATGGTGATCATGGGGTGAAATTTACTCATAAGGAGATTCCAGTTGATTGCAGAAAGAAGGCTTCAAGAATTTTGGATGCTGCTAATGGTGCCGTTGATGCATTATCATCTGGCACTCTTGAAGGTTTTTCCAATGGTATTAACCTGAAAACTGGATAGGTTATTACCTAAATTAAATGTAGTGTGTTCTTGGAGGTATTATATTGTTCGTACATAACCTAAAGTTTGTCAACCGCCACAAAAGAATATTGTAACTTATAGAGCAGTTCTGCAATTTATTAACTGAAGCAGATTCATGCTAAGACTTGACATATCTTTCTGATTTCATGGTGAAGCCAAAGTTTTCTGTTGGACTGCATAACTGATCAATATTCAATATATTTTTTACTTTTGTGTCATCCAGATATTTAATTTATGCATTGAGGTTAATAACATAACTTTCTTGATTTCTTTACATTCTGAAA

Ace file of the UniGene sp_v3.0_unigene13312

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Delta 1-pyrroline-5-carboxylate synthetase, putative n=2 Tax=Euphorbiaceae RepID=B9SE11_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase, C-terminal	IPR016163	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	-
Sma3	Gamma-glutamyl phosphate reductase GPR	IPR000965	-	-
Sma3	Glutamate/acetylglutamate kinase	IPR001057	-	-
Sma3	Delta l-pyrroline-5-carboxylate synthetase	IPR005766	-	-
Sma3	Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase	IPR005715	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G39800.1	P5CS1, ATP5CS delta1-pyrroline-5-carboxylate synthase 1 chr2:16598516-16602939 REVERSE LENGTH=717	72%
RefSeq	Arabidopsis thaliana	NP_001189714.1	Gamma-glutamyl phosphate reductase [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002315202.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR17

Fln msg:

Fln protein: MDPSRAFVKNAKRVIIKVGTAVVTRANGGLALGRLGSLCEQVKELMSVGLEVILVTSGAVGIGRQRLRYQRLINSSFVDLQKPQVELDGKPCAAVGQSGLMALYDSLFSQLDVASSQLLVTDNEFKDPEFRRQLNHTVTSLLELRVVPIFNENDAVSTRKAPYEDATGIFWDNDSLAALLALELRADLLILLSDVDGLYSGPPSDPRSKLIHTYVKEKHDETITFGDKSRVGRGGMTAKVKAACHAAEAGIPVVITSGFAADGALRVLQGERLGTLFHKDAHLWFSVKEYSARQMAVSARDASRCLQVLSSSDRRKILLDVADALEANEELIRRENESDVCVAKETRIADALVSRLTLKPGKIAGLAKSIRVLADMNDPIGEVLKRTELADGLILEKTTSPLGVLLIIFESRPDALVQIASLAIRSGNGLLLKGGKEAARSNAILHKIITEVLAKSVGSELIGLVNSRDEIPDLLKLDDVIDLVIPRGSNKLVSKIKESTKIPVLGHADGVCHVYVDKAADLDMAERIVLDAKTDYPAACNAMETLLVHEAVMKTGGLDRLVLALQAAGVRLYGGLKAADRLKLPKASSFHHEYSSMACTVEIVKDVLGAIDHIHEHGSAHTDCIITEDHDVAEVFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWLLRGNGQVVNGDHGVKFTHKEIPVDCRKKASRILDAANGAVDALSSGTLEGFSNGINLKTG*

Protein Length: 751

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTTAGTGAATCGATAAAATGCATAAGCTCTTATAAATAGAACGTGACGCAGTCGGCCAAATTAAAAATGAAGTGACCCACATTCTCATCGATCTTTTTCTTGGTTCTGGCCTATGGTAATCGCAGCCGCCGCCGGAGGCGCAGGCAGCC_-_ATGGATCCTTCTCGTGCTTTTGTCAAGAATGCGAAGCGAGTTATAATCAAGGTTGGCACTGCTGTCGTCACTAGAGCTAATGGAGGGCTTGCCTTGGGTCGCCTTGGTTCCTTATGTGAGCAGGTTAAAGAACTGATGTCAGTCGGCCTTGAGGTTATACTTGTGACCTCAGGTGCAGTAGGGATTGGTCGGCAGAGGCTTCGCTACCAAAGACTGATTAATAGCAGTTTTGTAGATCTCCAGAAACCACAAGTTGAACTTGATGGAAAGCCATGTGCTGCTGTTGGCCAGAGTGGCCTGATGGCTCTGTACGACAGTCTATTTAGCCAGCTGGATGTTGCTTCTTCCCAGCTTCTTGTAACTGACAATGAGTTCAAAGACCCAGAGTTCAGAAGACAACTGAATCATACTGTAACTTCTTTGCTGGAGCTCCGGGTAGTTCCAATTTTCAATGAAAATGATGCAGTTAGTACAAGGAAAGCTCCATATGAGGATGCTACTGGTATTTTCTGGGACAATGATAGTTTGGCTGCTCTACTGGCCCTTGAGTTGAGAGCTGATCTTCTAATTCTTCTAAGTGATGTGGATGGCCTTTACAGTGGTCCTCCAAGTGATCCTCGCTCAAAACTTATACATACTTACGTAAAGGAGAAACATGACGAGACAATCACATTTGGTGATAAGTCTAGGGTTGGACGGGGTGGAATGACTGCTAAAGTAAAAGCTGCTTGTCATGCTGCTGAAGCTGGCATTCCAGTTGTTATTACCAGTGGGTTTGCTGCTGATGGAGCTTTGAGAGTGCTGCAAGGGGAGCGTTTAGGCACTCTTTTCCATAAGGATGCACATTTGTGGTTTTCAGTCAAAGAGTACAGTGCCCGGCAGATGGCAGTTAGTGCGAGAGATGCTAGTCGCTGCTTGCAGGTTCTTTCTTCCTCTGATCGGAGGAAGATTCTACTAGATGTGGCAGATGCTCTGGAAGCCAATGAAGAGCTAATCAGGAGAGAGAATGAATCTGATGTTTGTGTTGCAAAAGAAACAAGAATTGCAGACGCCCTGGTTTCTCGATTAACTCTAAAACCTGGAAAGATTGCAGGATTGGCAAAGTCAATCAGAGTTCTTGCAGACATGAATGACCCAATTGGTGAAGTGCTGAAAAGGACAGAGCTTGCAGATGGTCTAATTCTAGAGAAGACAACCAGTCCCTTAGGTGTGCTGCTTATAATTTTTGAATCCCGACCAGATGCTCTGGTTCAGATAGCTTCATTAGCAATCCGGAGTGGAAATGGGCTGCTTCTAAAAGGGGGCAAAGAAGCAGCTCGATCAAATGCGATTTTGCATAAGATTATTACTGAAGTATTGGCCAAATCTGTGGGATCAGAGCTGATTGGCCTTGTTAATTCTAGAGATGAAATTCCAGATCTACTAAAGCTGGATGATGTTATAGATCTTGTCATTCCAAGAGGAAGTAATAAGCTGGTGTCAAAAATAAAGGAGTCAACAAAAATTCCAGTGCTTGGTCATGCTGATGGTGTTTGCCATGTATATGTGGACAAAGCAGCTGATTTGGATATGGCCGAAAGAATTGTTTTAGATGCAAAAACTGATTATCCTGCCGCTTGTAATGCAATGGAAACTCTGCTTGTACATGAAGCAGTTATGAAGACTGGTGGCCTTGACAGACTTGTTTTGGCATTACAAGCAGCAGGTGTTAGATTGTATGGTGGCTTAAAGGCTGCTGATAGGTTGAAGTTACCCAAGGCCAGTAGTTTTCATCATGAATACAGTTCGATGGCATGCACTGTAGAAATAGTAAAGGATGTTTTGGGGGCTATTGATCATATTCACGAGCATGGAAGTGCTCACACAGACTGTATAATAACTGAAGATCATGATGTTGCGGAGGTTTTCTTACGCCAGGTAGACAGTGCTGCTGTATTTCATAATGCGAGTACACGCTTTTGTGATGGAGCTCGCTTTGGTCTTGGTGCTGAGGTTGGAATAAGTACAAGCAGGATACATGCTCGTGGACCTGTAGGAGTTGAAGGGCTTTTAACAACCAGATGGTTGTTGAGAGGTAATGGGCAAGTGGTAAATGGTGATCATGGGGTGAAATTTACTCATAAGGAGATTCCAGTTGATTGCAGAAAGAAGGCTTCAAGAATTTTGGATGCTGCTAATGGTGCCGTTGATGCATTATCATCTGGCACTCTTGAAGGTTTTTCCAATGGTATTAACCTGAAAACTGGATAG___GTTATTACCTAAATTAAATGTAGTGTGTTCTTGGAGGTATTATATTGTTCGTACATAACCTAAAGTTTGTCAACCGCCACAAAAGAATATTGTAACTTATAGAGCAGTTCTGCAATTTATTAACTGAAGCAGATTCATGCTAAGACTTGACATATCTTTCTGATTTCATGGTGAAGCCAAAGTTTTCTGTTGGACTGCATAACTGATCAATATTCAATATATTTTTTACTTTTGTGTCATCCAGATATTTAATTTATGCATTGAGGTTAATAACATAACTTTCTTGATTTCTTTACATTCTGAAA

Fln Alignment:

Contig13312___MDPSRAFVKNAKRVIIKVGTAVVTRANXXXXXXXXXXXCEQVKELMSVGLEVILVTSGAVGIGRQRLRYQRLINSSFVDLQKPQVELDGKPCAAVGQSGLMALYDSLFSQLDVASSQLLVTDNEFKDPEFRRQLNHTVTSLLELRVVPIFNENDAVSTRKAPYEDATGIFWDNDSXXXXXXXXXXXXXXXXXSDVDGLYSGPPSDPRSKLIHTYVKEKHDETITFGDKSRVGRGGMTXXXXXXXXXXXXGIPVVITSGFAADGALRVLQGERLGTLFHKDAHLWFSVKEYSARQMAVSARDASRCLQVLSSSDRRKILLDVADALEANEELIRRENESDVCVAKETRIADALVSRLTLKPGKIAGLAKSIRVLADMNDPIGEVLKRTELADGLILEKTTSPLGVLLIIFESRPDALVQIASLAIRSGNGLLLKGGKEAARSNAILHKIITEVLAKSVGSELIGLVNSRDEIPXXXXXXXXXXXXXPRGSNKLVSKIKESTKIPVLGHADGVCHVYVDKAADLDMAERIVLDAKTDYPAACNAMETLLVHEAVMKTGGLDRLVLALQAAGVRLYGGLKAADRLKLPKASSFHHEYSSMACTVEIVKDVLGAIDHIHEHGSAHTDCIITEDHDVAEVFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWLLRGNGQVVNGDHGVKFTHKEIPVDCRKKASRILDAANGAVDALSSGTLEGFSNGINLKTG
B8LR17_______________MDPSRAFVKNAKRVIIKVGTAVVTRANGGLALGRLGSLCEQVKELMSFGLEVILVTSGAVGIGRQRLRYQRLINSSFVDLQKPQVELDGKPCAAVGQSGLMALYDSLFSQLDVASSQLLVTDNEFKDPEFRRQLNDTVTSLLELRVVPIFNENDAVSTRKAPYEDATGIFWDNDSLAALLALELRADILILLSDVDGLYSGPPSDPCSKLIHTYIKEKHDETITFGDKSRVGRGGMTAKVKAACHAADAGIPVVITSGFAADGALRVLQGERLGTLFHKDAHLWFSVKERSARKMAVNARDASRRLQVLSSSDRRKILLDVADALEANEEIIRKENESDVCIAKETRTAEALVSRLTLKPGKISGLAKSVRVLADMNDPIGEVLERTELADGLILEKTASPLGVLLIIFESRPDALVQIASLAIRSGNGLLLKGGKEAAQSNAILHKIITEALPKSVGSELIGLVNSRDEIPDLLKLDDVIDLVIPRGSNKLVLEIKESTKIPVLGHSDGVCHVYVDKAADLDMAKRIILDAKTDYPAACNAMETLLVHEAVMKTGGLAKLILALQTAGVRLYGGLKAADTLKLPKASSFHHEYSSMACTVEIVKDVLGAIDHIHEHGSAHTDCIITEDRDVAEVFLHQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWLLRGNGQVVNGDHGVKFTHKELPVDCRKKASRMLEAANGAVDALSSGTLEGFSNGNNLKTG

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
176		60		40	1.0
259		20	80		0.995493
421	88			11	0.923564
422	88			11	0.923564
423	88	11			0.923564
424		88	11		0.923564
1506	25		75		0.996473
1600	14	85			0.993533
1602	85		14		0.993533
1717			90	10	0.90298
1718		10		90	0.90298
1835	11			88	0.923564
1849		88		11	0.923564
1862	10		90		0.90298
1864			10	90	0.90298
1865			10	90	0.90298
1866			10	90	0.90298
2166		90		10	0.90298
2219			90	10	0.90298
2220	90	10			0.90298
2223		12	87		0.992554
2432	93	6			0.999153
2433			6	93	0.999153
2437		93	6		0.999153
2440	93	6			0.999153
2441	93	6			0.999153
2444	93		6		0.999153
2445	93		6		0.999153
2446	90	6			0.997073
2451		6	93		0.999153
2453		6	93		0.999153
2454	6	3		90	0.997073
2668	10			90	0.90298
2669	10	90			0.90298
2670	11	88			0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain