SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13248

Length: 1997 nt

UniGene Fasta

>sp_v3.0_unigene13248
GTTATGATTCAGACACATTGGCTGCATTTGATGATGCAATCAAAGAATGGAGTGGACATATTATCTCTTTCATTAGGCCATGATGTTCCTGAAAACGATTACTTCAGTGATGCGATCTCTGTGGGCTCATTCCATGCAACACAAAATGGAATTACTGTGATTTGCTCAGTGGGGAATGATGGGAGTTCTGGCTCTGCAACAAATCTTGCTCCGTGGGTTATTACGGTGGCTGCTAGTTCTACAGATAGGGACTTTATCTCTGACATCAGATTAAGCGAGAACAATGTTACCTACAAAGGTGAAAGCCTGAATATAGCACAGCTGAATGCGTCTGCGGAGCTTTTGTCTGCGGAAAATGCACATGCAAAATACTTTACTCCTTACCAATCGAGCTTCTGTCTAAACAGCTCTTTGGATGATTCTAAAGTGGCAGGAAAGATACTGATTTGCTGGTATCCTGAAGATTCTTCCGAGTCAAGGATATCAAAAAGTCAAATAGTCCAAGCAGCTGGAGGAGTGGGGATGATCCTAATTGATGAGACTGGCAATAGTCTTGCAACTCCTTTTGTTATCCCTGGTGCAATTGTGGACAACAAAGTTGGTGCTGAAATTCTTGCCTATATCAACTCTACCAGGTTTCCTCGAGCCTATGTGTTGCCTGCAGAAACAGTCTTGGGACTCAGGCCAGCACCTCAGGTTGCAGCCTTCTCCTCAAAAGGTCCCAACACACTAACACCGGATATCTTGAAGCCTGACCTCACAGCTCCAGGGTTGAATATACTAGCTGCATGGACACCGGTAAAGAACGACATGCATTTCAACATTGCCTCAGGAACTTCCATGTCTTGTCCACATGTGACAGGAATAGCTGCTTTGATTAAAGCTGCACACCCATCTTGGACTCCATCAGCCATTAAATCTGCCCTCATGACAACAGCTACAGTATTGGATAAAAATAAGAATTTCATAACTGCTGCTCCACAAGGACGGACTGCAAACCCATTTGACTTTGGAGCAGGACTTTTAAGGCCTATGAAAGCAGAAAATCCAGGACTTGTGTACGATGCTGGGCCCACAGATTATGTGAACTTTCTCTGTGGAATTGGCTATGATGATTCATCTCTTAGGCTTGTCACAGGAGATCATAGTGCATGCACAAGCTTTCGTCCAACAGCTTCCAATCTCAATTATCCTTCCATTACAATCTCAGAATTCAATGGCAACAGTTCAGTCATACGAACAGTGACAAATGTAGGAAGCGCAAATAGTACCTATACTGTGAGTATTTCTCCACCTAGAGGGATAAGTGTGCAGGTTGCTCCAAGTATTTTGACATTTAACTTCTATGGCCAAAACATTAGTTTCACGGTGCAGTTCAAAAGGGTTTTCCAAACTCGGGGATATGTATTTGGATCACTTTCTTGGGTGAATGGAAATCAAAGAGTAAGAATACCTTTGGTAGTGGGTTCCTTCGTCTCTTAGGAGTTGTATGGGATCCACTTCAAAATTATTTGAATTCATCCTAGAGCAATATGGAATATGGGGAGAATTGATTGCTAAGGAAAGATGCACCATTCTGGTTACATTTTTGTGAACATTTGTATTTGCAGCATATAACTTCTATTGGATCTCCAATCAGCAATTTGGATTTGCAAGATAGATATTAGAAAGTCATGGACATGTTTCTGTAGCGAGTGAAATTGGAGACCTCTGTAGTTTGGAGAATCTAAGTTGAAAGGATGTTTGTCAAAATATTTGAAGCAGGCAAGAAAGGTGTTGTGTTTACAGATAAAGCTTCTTCCTGGAAAACATCTTTGAGCAGAGTTGCTAACACAGCATTTCTTATTGGAGAAAATGGTCAGACAAGTAGCGAAGTATTCTCATGGTGTACCTTTCAATATGCTCGATTTGATAGCAACTGAGAAAATTACAAGGACTTTGCAACTTCTCCAAAGCACTGTATAACTACTCGAAAGACAAGATATTAACCCCGATTC

Ace file of the UniGene sp_v3.0_unigene13248

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine protease-like protein [Nicotiana tabacum]	-	-	0.0	64%
FL-Next	tr=Subtilisin-like protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	40%
Sma3	Xylem serine proteinase 1, putative	-	-	8.15556e-43	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	2.027e-11	-
Sma3	Cucumisin.	EC:3.4.21.25	-	6.08164e-43	-

Source	Gene names
Sma3	46C02.13; A43; AIR3; AT3G14067; AT4g10520; AT4g34980; At1g20160; At1g32940; At1g32970; At2g04160; At2g05920; At3g14067; At3g14240; At4g10520; At4g34980; At5g51750; At5g59810/mmn10_30; F3H7.14; F7L13.100; F9L11.11; F9L11.14; GSVIVT00000484001; GSVIVT000004

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	plant-type cell wall modification	GO:0009827	Biological Process	-
Sma3	lateral root morphogenesis	GO:0010102	Biological Process	-
Sma3	negative regulation of catalytic activity	GO:0043086	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Domain of unknown function DUF591	IPR007649	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Peroxisome membrane protein, Pex16	IPR013919	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002317030.1	predicted protein [Populus trichocarpa]	0.0	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q40764

Fln msg: your sequence is shorter than subject: 494 - 779

Fln protein: VMIQTHWLHLMMQSKNGVDILSLSLGHDVPENDYFSDAISVGSFHATQNGITVICSVGNDGSSGSATNLAPWVITVAASSTDRDFISDIRLSENNVTYKGESLNIAQLNASAELLSAENAHAKYFTPYQSSFCLNSSLDDSKVAGKILICWYPEDSSESRISKSQIVQAAGGVGMILIDETGNSLATPFVIPGAIVDNKVGAEILAYINSTRFPRAYVLPAETVLGLRPAPQVAAFSSKGPNTLTPDILKPDLTAPGLNILAAWTPVKNDMHFNIASGTSMSCPHVTGIAALIKAAHPSWTPSAIKSALMTTATVLDKNKNFITAAPQGRTANPFDFGAGLLRPMKAENPGLVYDAGPTDYVNFLCGIGYDDSSLRLVTGDHSACTSFRPTASNLNYPSITISEFNGNSSVIRTVTNVGSANSTYTVSISPPRGISVQVAPSILTFNFYGQNISFTVQFKRVFQTRGYVFGSLSWVNGNQRVRIPLVVGSFVS*

Protein Length: 495

Fln nts: GTTATGATTCAGACACATTGGCTGCATTTGATGATGCAATCAAAGAATGGAGTGGACATATTATCTCTTTCATTAGGCCATGATGTTCCTGAAAACGATTACTTCAGTGATGCGATCTCTGTGGGCTCATTCCATGCAACACAAAATGGAATTACTGTGATTTGCTCAGTGGGGAATGATGGGAGTTCTGGCTCTGCAACAAATCTTGCTCCGTGGGTTATTACGGTGGCTGCTAGTTCTACAGATAGGGACTTTATCTCTGACATCAGATTAAGCGAGAACAATGTTACCTACAAAGGTGAAAGCCTGAATATAGCACAGCTGAATGCGTCTGCGGAGCTTTTGTCTGCGGAAAATGCACATGCAAAATACTTTACTCCTTACCAATCGAGCTTCTGTCTAAACAGCTCTTTGGATGATTCTAAAGTGGCAGGAAAGATACTGATTTGCTGGTATCCTGAAGATTCTTCCGAGTCAAGGATATCAAAAAGTCAAATAGTCCAAGCAGCTGGAGGAGTGGGGATGATCCTAATTGATGAGACTGGCAATAGTCTTGCAACTCCTTTTGTTATCCCTGGTGCAATTGTGGACAACAAAGTTGGTGCTGAAATTCTTGCCTATATCAACTCTACCAGGTTTCCTCGAGCCTATGTGTTGCCTGCAGAAACAGTCTTGGGACTCAGGCCAGCACCTCAGGTTGCAGCCTTCTCCTCAAAAGGTCCCAACACACTAACACCGGATATCTTGAAGCCTGACCTCACAGCTCCAGGGTTGAATATACTAGCTGCATGGACACCGGTAAAGAACGACATGCATTTCAACATTGCCTCAGGAACTTCCATGTCTTGTCCACATGTGACAGGAATAGCTGCTTTGATTAAAGCTGCACACCCATCTTGGACTCCATCAGCCATTAAATCTGCCCTCATGACAACAGCTACAGTATTGGATAAAAATAAGAATTTCATAACTGCTGCTCCACAAGGACGGACTGCAAACCCATTTGACTTTGGAGCAGGACTTTTAAGGCCTATGAAAGCAGAAAATCCAGGACTTGTGTACGATGCTGGGCCCACAGATTATGTGAACTTTCTCTGTGGAATTGGCTATGATGATTCATCTCTTAGGCTTGTCACAGGAGATCATAGTGCATGCACAAGCTTTCGTCCAACAGCTTCCAATCTCAATTATCCTTCCATTACAATCTCAGAATTCAATGGCAACAGTTCAGTCATACGAACAGTGACAAATGTAGGAAGCGCAAATAGTACCTATACTGTGAGTATTTCTCCACCTAGAGGGATAAGTGTGCAGGTTGCTCCAAGTATTTTGACATTTAACTTCTATGGCCAAAACATTAGTTTCACGGTGCAGTTCAAAAGGGTTTTCCAAACTCGGGGATATGTATTTGGATCACTTTCTTGGGTGAATGGAAATCAAAGAGTAAGAATACCTTTGGTAGTGGGTTCCTTCGTCTCTTAG___GAGTTGTATGGGATCCACTTCAAAATTATTTGAATTCATCCTAGAGCAATATGGAATATGGGGAGAATTGATTGCTAAGGAAAGATGCACCATTCTGGTTACATTTTTGTGAACATTTGTATTTGCAGCATATAACTTCTATTGGATCTCCAATCAGCAATTTGGATTTGCAAGATAGATATTAGAAAGTCATGGACATGTTTCTGTAGCGAGTGAAATTGGAGACCTCTGTAGTTTGGAGAATCTAAGTTGAAAGGATGTTTGTCAAAATATTTGAAGCAGGCAAGAAAGGTGTTGTGTTTACAGATAAAGCTTCTTCCTGGAAAACATCTTTGAGCAGAGTTGCTAACACAGCATTTCTTATTGGAGAAAATGGTCAGACAAGTAGCGAAGTATTCTCATGGTGTACCTTTCAATATGCTCGATTTGATAGCAACTGAGAAAATTACAAGGACTTTGCAACTTCTCCAAAGCACTGTATAACTACTCGAAAGACAAGATATTAACCCCGATTC

Fln Alignment:

Contig13248___KNGVDILSLSLG-HDVPENDYFSDAISVGSFHATQNGITVICSVGNDG-SSGSATNLAPWVITVAASSTDRDFISDIRLSENNVTYKGESLNIAQLNASA--ELLSAENAHAKYFTPYQSSFCLNSSLDDSKVAGKILICWYPEDSSESRISKSQIVQAAGGVGMILIDETGNSLATPF-VIPGAIVDNKVGAEILAYINSTRFPRAYVLPAETVLGLRPAPQVAAFSSKGPNTLTPDILKPDLTAPGLNILAAWTP--------VKNDM---HFNIASGTSMSCPHVTGIAALIKAAHPSWTPSAIKSALMTTATVLDKNKNFITAAPQGRTANPFDFGAGLLRPMKAENPGLVYDAGPTDYVNFLCGIGYDDSSLRLVTGDHS-ACTS--FRPTASNLNYPSITISEF---NGNSSVIRTVTN-VGSANSTYTVSISPPRGISVQVAPSILTFNFYGQNISFTVQFKRV-FQTRGYVFGSLSWVNGNQRVRIPLVV
Q40764_______________KDGVDIVSISIGVRSSNQADFVKDAIAIGAFHATQKGILVVSSAGNEGPDSQTVVNAAPWIFTVGATSIDREFLSNVVLGNGKII-KGKGITMSNLSHSAVHPLVYAGSIPDKSSYPVAASNCLLDSLDASKAKGNVVVC-IANDTAASRYIMKLAVQDAGGIGMVVVEDIQIFEAFDYGTFPATAVSKTSATEIFSYIKSNRNPVATITLTEVVTNYIPAPVIASFSSRGPGGLTQNILKPDISAPGVNIIAAWNPPNQSDEDTVVSEMTPSTFNMMSGTSVAVPHVTGAAAFVKSINPTWSSSAIRSALMTTA-IVRNNMGKLLTNESDIPGTPFDFGAGVVNPIGALQPGLVYETSIDDYFHFLCNYGLDSENIKIIAANESYKCPSGVNADLISNMNYPSIAISKLGIKNGSTTISRSVTNFVPEQAPTYKVTIDAPPGLNVKVSPEILHFSKTSKKLSFNVVFTPTNVATKGYAFGTLVWSDGKHNVRSPFAV

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
323		88		11	0.923564
682		85	14		0.993533
737		85	14		0.993533
852	25	75			0.996473
853		75		25	0.996473
854	75		25		0.996473
855		75	25		0.996473
856	75		25		0.996473
1323		66		33	0.997452
1356	25			25	0.995533
1357	75			25	0.996473
1358	75	25			0.996473
1449	25		75		0.996473
1450		25		75	0.996473
1452	75			25	0.996473
1453			75	25	0.996473
1650	16			83	0.994512
1920	87		12		0.992554
1922		87	12		0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain