SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13228

Length: 1640 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene13228

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Carbonic anhydrase n=1 Tax=Picea sitchensis RepID=A9P240_PICSI	-	-	92%
FL-Next	sp=Carbonic anhydrase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	carbonate dehydratase activity	GO:0004089	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	carbon utilization	GO:0015976	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Carbonic anhydrase	IPR001765	-	0.0	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Arabidopsis thaliana	NP_567928.1	beta carbonic anhydrase 5 [Arabidopsis thaliana]	0.0	55%
RefSeq	Populus trichocarpa	XP_002314617.1	predicted protein [Populus trichocarpa]	0.0	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P240

Fln msg: your sequence is longer than subject: 335 - 303

Fln protein: MASALSELLRTQSTLFMQSDTQLANSSYCHSMPLRTKLKLFINCPRRRPASKTEIRASLRVQTADDLFDETHRRFVKLVEATPGLRQVAAKKLQELAEDLVKGNKEPSMRIDSDPFEKIRHGFLTFKQQQFLKKPDHFTKLAVEQSPKFLVIACSDSRVCPSNILGFQPGEAFVVRSISNLVPKRKENDISGTSAALEFAVLSLKVEHILVIGHSRCGGIRALMSIPDEGTISSEFIERWVTTANDARLRTKAVAGHLTLDEQCSFCEKESVNQSLSNLLTFPWIKELVAQDKLSLHGGYYDFVEGYFERWTIDCKAGKVESFNHKIINHCLWC*

Protein Length: 336

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGATCCAGCGATCGATTCCCTTCTGATCTGTTGGAGGCTAGAGACCAGAAAATCGAGCAAACCATCCATCA_-_ATGGCTTCTGCGTTATCTGAATTACTGCGCACGCAGTCAACACTCTTTATGCAATCGGATACTCAGCTTGCTAATTCTTCTTATTGTCATTCAATGCCACTCCGGACTAAGCTAAAGCTTTTTATCAACTGTCCCAGACGAAGACCAGCGTCAAAGACGGAGATCCGAGCGTCCTTGAGAGTGCAGACTGCTGATGACCTCTTCGACGAGACGCACAGGCGGTTCGTTAAGTTGGTCGAGGCAACTCCTGGCTTAAGGCAAGTTGCTGCAAAGAAGCTTCAGGAACTGGCTGAAGACCTGGTAAAGGGAAACAAAGAGCCATCTATGAGGATTGATTCAGATCCATTTGAAAAGATTAGGCATGGGTTCCTGACCTTCAAGCAGCAGCAATTCTTGAAGAAGCCAGATCATTTTACCAAACTTGCTGTAGAACAAAGCCCAAAGTTTCTGGTGATTGCATGCTCAGATTCCAGAGTTTGTCCATCAAACATTTTGGGTTTTCAGCCAGGGGAAGCATTTGTGGTTCGCAGTATTTCCAATTTGGTTCCCAAACGGAAGGAGAATGACATTTCAGGAACTAGTGCTGCATTGGAATTTGCTGTTCTCTCTCTCAAGGTCGAGCATATATTAGTTATTGGTCACAGTCGTTGTGGAGGAATTAGGGCGCTTATGTCAATCCCAGATGAAGGAACAATTTCAAGTGAATTCATTGAAAGATGGGTGACAACAGCAAATGATGCACGCTTGCGCACAAAAGCTGTTGCTGGGCATCTCACATTAGATGAGCAATGTAGCTTCTGTGAAAAGGAGTCTGTGAATCAGTCCTTATCAAACCTCTTGACGTTCCCTTGGATAAAAGAACTTGTGGCTCAGGATAAATTATCTCTTCATGGTGGTTACTATGACTTTGTGGAGGGATACTTTGAACGATGGACTATTGATTGCAAGGCAGGAAAGGTTGAAAGTTTTAACCACAAAATAATCAATCATTGCCTGTGGTGCTAA___CTTTCATGTCTAAGGTTTCTACGATAATAATTCTCACTGCAGTAATTTCATTAAACTGAGACAGATCCACATCAACAGCAACAGGAAGAGATTACTTCAAATTATTTTCCTAAGGACAAAGCTGCCACTGTAGTATTCACTGCAAGGGGTATGAAAACAGGGATCTCATCAGCAGCTTCTTCTTGCTCTTGGATGTTAGGAGAGCTGCAAGTTGCAATATATTTTCTTTAGGGATTCTCTCTTGTAATAGTCCATATTGCACTCGTGGCTTCTTTATTTCTCTTCCTTTACCTTAAATTGGTTTGGCACTCCCAAGACGCTCTCTTTTCTTTGTATTCGTATTGCTTTCAGAGATGCTTTAGCACTCCCAGTTCTAACTTTAATTTTTATAGTCACTTTGGTCATGCATTGACCGAATGTGGCAATTACTGGGCATTAATATTTGAATTTAATTGAACTAAATATATCAGGTCAAAATAAATCTATGGAAATAAATATATATTTTTTGAAAGGATTTATGTAAAGTTCGTCAAATAACATT

Fln Alignment:

Contig13228___MPLRTKLKLFINCPRRRPASKTEIRASLRVQTADDLFDETHRRFVKLVEATPGLRQVAAKKLQELAEDLVKGNKEPSMRIDSDPFEKIRHGFLTFKQQQFLKKPDHFTKLAVEQSPKFLVIACSDSRVCPSNILGFQPGEAFVVRSISNLVPKRKENDISGTSAALEFAVLSLKVEHILVIGHSRCGGIRALMSIPDEGTISSEFIERWVTTANDARLRTKAVAGHLTLDEQCSFCEKESVNQSLSNLLTFPWIKELVAQDKLSLHGGYYDFVEGYFERWTIDCKAGKVESFNHKIINHCLWC
A9P240_______________MPLHTKLKLFINCPRRRPASKMEIRASVRLQTADDLFDETHRRFVKLVEATPGLRKVAAKKLQELAEDLVKGNKEPSMRIDSDPFEKIRHGFLTFKQQHFLKKPDHFTKLATVQSPKFLVIACSDSRVCPSNILGFQPGEAFVVRSIANLVPKRKENDLSGTSAALEFAVLSLKVEHILVIGHSRCGGIRALMSMPDEGTISSEFIERWVTTAKAARLHTKAVAGHLTLDDQCSFCEKESVNQSLSNLLTFPWIKELVAQDKLSLHGGYYDFVEGYFEQWTVGCKAGKAENLNQEIINHCMWC

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
75	80			20	0.995493
76	80		20		0.995493
77	80		20		0.995493
78			20	80	0.995493
79		80	20		0.995493
126		52		47	1.0
144		61		38	1.0
194		88		11	0.999937
198		76	23		1.0
414	16		83		0.994512
481	12	87			0.992554
483	12		87		0.992554
762	15		84		0.999986
944		87		12	0.992554
1112			22	77	1.0
1124	27		72		1.0
1241		25		75	1.0
1335	33	66			1.0
1368		25	75		0.996473
1445			80	20	0.995493
1525	92	7			0.999664
1607		20		80	0.995493
1630	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain