SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13205

Length: 2381 nt

UniGene Fasta

>sp_v3.0_unigene13205
CATATCCTTGTGTTGTGGATTGTCCCACATGGGGATATACTCTCTTCTTTGCGTTTTTCCTCGGCGGAGAAATCGTGCGCATTCTTCTCAAATACATAGAGGCACAGGAGGTTCCTGTCACAATCTGGAATGGGATGCGTTACATTTGTTTAGGAGATCGGCCATTTACATGTGTGTAGGATTGTGCTTGAATCTGGCAAGCAAGCAATCCGCAGTTGGGATTTTGCTTGTTGGGTGGTTGAGGATCGTTGAGAGTAGTTGAAGAGGAAATTAAATGGTGGCATCATCCCGTCAGATGGAGTTTTCAGAATTCAATTGTGGGCATAATCTGTGCAGTCCTTATTGTTGCAGGCTGTTGAAGCGCTGATGAGGATGCTGAGTCCTGAGGATTCATTTTTAAAGGGCTAAAATTTCACAAGTATTTTAAGGGCACTTGGGTGCATCTAGGTATATCAGTTTTGTGGTAATAGATAGAAAAATCTTTTACCCAATTCAAGAAATCAATTTGGCAGATTAGTTTTCTAGGCTAGAAACTAATTGTAAACTGAACTTGAAGGCTAAGATTGGGACAGAAACCCAGGGATTCTGCAGGATGAAGTGCTTTCATTTTTCGTATGCGGAAAGGGAGAGGAAGGAAGATGCGAGGATCAACAAGAAATCAATATGGACGAGGTCATTGAGTGGTGGGTCGTGCCCAGAGGGGAGGAGGTCTGGTTCTGACATTAACTCTCAGACAATTTCTTCAGATGTAAGCGTTGATTCCCCTGGACCCAACATAACGACCAGCTTGTCACAGAGACCCCCGAACAGTCTCCGGGTATTTACCTATGCAGAGCTCAGGGCTGCAACCAAGAATTTCAGTCGCTCCCTCATGCTTGGAGAAGGTGGATTTGGGTCTGTGTACAGAGGTTTGATTAAAAGCCTTGACGATCCCCATGCCAAAGTTGAGGTAGCTGTGAAGCAACTCAACAGAAAAGGATTGCAAGGGCATAAAGAATGGGTTACAGAAGTGCATTTTCTTGGGCTTGTTGAGCATCCAAATCTAGTGAACTTGGTTGGTTATTGTGCTGAAGATGATGAAAGAGGTATACAACGGCTCTTGGTCTATGAGTTTATGCCAAACAAGAGCCTAGAGGACCACCTATTGAGTCGAGTTCTCCCAGCTCTCCCATGGACTTTGAGATTACAAATAGCCCTAGGGGCAGCTCGTGGCTTAGCTTACCTGCATGAAGAAATGGATTTCCAGATAATTTTTCGAGATCTTAAAACATCTAATATTCTGTTAGATGAAAACTTCAATCCAAAATTATCAGATTTTGGATTGGCTAGGCAAGGACCAGCAGGAGGTATCAGTCATGTCTCGACAGCGGTTGTAGGCACTGTGGGATATGCAGCTCCAGAATATATTCAAACTGGCCATCTCACATCCAAGAGCGACGTTTGGAGTTTTGGAGTAGTGTTGTATGAACTACTTACAGGAAGGAGATCCATGGATAGAAACCGGCCAAAAAATGAACAAAAGCTTCTGGAATGGGTGAAGCCATATATATCAGATGCAAGAAAATTCCGTCTAATAATGGACCCCAGACTTGATGGTCAATACTCTCTCAAATTAGCACACAAAGTTGCGTCTCTGGCCAATAGTTGTTTAGTAAAGCATCCAAGATCTCGTCCTAAGATGAGTGAAGTGGTTGAGATATTGAAACAGATAGTAGAAGCTGCAGAAGCAGAAAGCCCTCAACCACCAATTGTTTGTGAAACTGTTGACAGCAGCACTGAGATTTTAACTGAGCCTGCAAAAGACACTGTCAATTCAAAGCGGCGAATGCTACTCCTGAGAGACATGATGAACCTTAGAAGTAGAGACAATGGCCGTCCTGCTTGGAGAGCATGGACTCCAAAGATGGTGAGAACATGGTAAATGAATTTCAACCAGAAGTGACTGCCAAACACAAAATTTTTAGTTACAATAATGAATCATAAAGTACTCCCATTCAGAACTGGGCAATCCATTTTGTGTTTATAGGTCAGATGTATAAATTTGCTTTTCTTGATATTTATTTCTCCTGAATTATTGATGTAAGCACATAGGATGGATTGTGTATTGTTTTTAATTTAGATTAAATCGTAAGAGTAACAACCATCTGTTTTGATTTATCAGAGATAATTGAAATTAGAAATTCTCAGTTCATCATAATTAGAAGCAGTCTACAATCCTCGAGCAGACTGCTTTTGTGGATTACAATTCTCATATGGATGAGCTTGTGTGGTATTCAAACCAACGTACGTGATTACTGCAGAGAATGGTTGTGATTCCTTCAAGATTCCTACCGCACATTTGAACGGTTATTACCATAAGACTAATCAATTAAGGCAATAAA

Ace file of the UniGene sp_v3.0_unigene13205

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein serine/threonine kinase [Lophopyrum elongatum] gb\|AAK11674.1\|AF339747_1 protein kinase [Lophopyrum elongatum]	-	-	0.0	57%
FL-Next	sp=Probable receptor-like protein kinase At5g47070; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Sma3	Protein kinase APK1B, chloroplast, putative	-	-	1.177e-34	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	3.491e-21	-

Source	Gene names
Sma3	26.t00086; 27.t00067; ABC1041; ACIK1; AFSK; APK1A; APK1B; APK2a; APK2b; AT3G09830; AT4g17660; At1g07570; At1g14370; At1g14370/F14L17.14; At1g61590; At2g02800; At2g02800/T20F6.6; At2g05940; At2g07180; At2g17220; At2g17220/T23A1.8; At2g26290; At2g28930; At2

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G28940.2	Protein kinase superfamily protein chr2:12426853-12428678 REVERSE LENGTH=462	56%
RefSeq	Arabidopsis thaliana	NP_973556.1	protein kinase family protein [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002315317.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LTC0

Fln msg: your sequence is longer than subject: 443 - 410

Fln protein: MKCFHFSYAERERKEDARINKKSIWTRSLSGGSCPEGRRSGSDINSQTISSDVSVDSPGPNITTSLSQRPPNSLRVFTYAELRAATKNFSRSLMLGEGGFGSVYRGLIKSLDDPHAKVEVAVKQLNRKGLQGHKEWVTEVHFLGLVEHPNLVNLVGYCAEDDERGIQRLLVYEFMPNKSLEDHLLSRVLPALPWTLRLQIALGAARGLAYLHEEMDFQIIFRDLKTSNILLDENFNPKLSDFGLARQGPAGGISHVSTAVVGTVGYAAPEYIQTGHLTSKSDVWSFGVVLYELLTGRRSMDRNRPKNEQKLLEWVKPYISDARKFRLIMDPRLDGQYSLKLAHKVASLANSCLVKHPRSRPKMSEVVEILKQIVEAAEAESPQPPIVCETVDSSTEILTEPAKDTVNSKRRMLLLRDMMNLRSRDNGRPAWRAWTPKMVRTW*

Protein Length: 444

Fln nts: CATATCCTTGTGTTGTGGATTGTCCCACATGGGGATATACTCTCTTCTTTGCGTTTTTCCTCGGCGGAGAAATCGTGCGCATTCTTCTCAAATACATAGAGGCACAGGAGGTTCCTGTCACAATCTGGAATGGGATGCGTTACATTTGTTTAGGAGATCGGCCATTTACATGTGTGTAGGATTGTGCTTGAATCTGGCAAGCAAGCAATCCGCAGTTGGGATTTTGCTTGTTGGGTGGTTGAGGATCGTTGAGAGTAGTTGAAGAGGAAATTAAATGGTGGCATCATCCCGTCAGATGGAGTTTTCAGAATTCAATTGTGGGCATAATCTGTGCAGTCCTTATTGTTGCAGGCTGTTGAAGCGCTGATGAGGATGCTGAGTCCTGAGGATTCATTTTTAAAGGGCTAAAATTTCACAAGTATTTTAAGGGCACTTGGGTGCATCTAGGTATATCAGTTTTGTGGTAATAGATAGAAAAATCTTTTACCCAATTCAAGAAATCAATTTGGCAGATTAGTTTTCTAGGCTAGAAACTAATTGTAAACTGAACTTGAAGGCTAAGATTGGGACAGAAACCCAGGGATTCTGCAGG_-_ATGAAGTGCTTTCATTTTTCGTATGCGGAAAGGGAGAGGAAGGAAGATGCGAGGATCAACAAGAAATCAATATGGACGAGGTCATTGAGTGGTGGGTCGTGCCCAGAGGGGAGGAGGTCTGGTTCTGACATTAACTCTCAGACAATTTCTTCAGATGTAAGCGTTGATTCCCCTGGACCCAACATAACGACCAGCTTGTCACAGAGACCCCCGAACAGTCTCCGGGTATTTACCTATGCAGAGCTCAGGGCTGCAACCAAGAATTTCAGTCGCTCCCTCATGCTTGGAGAAGGTGGATTTGGGTCTGTGTACAGAGGTTTGATTAAAAGCCTTGACGATCCCCATGCCAAAGTTGAGGTAGCTGTGAAGCAACTCAACAGAAAAGGATTGCAAGGGCATAAAGAATGGGTTACAGAAGTGCATTTTCTTGGGCTTGTTGAGCATCCAAATCTAGTGAACTTGGTTGGTTATTGTGCTGAAGATGATGAAAGAGGTATACAACGGCTCTTGGTCTATGAGTTTATGCCAAACAAGAGCCTAGAGGACCACCTATTGAGTCGAGTTCTCCCAGCTCTCCCATGGACTTTGAGATTACAAATAGCCCTAGGGGCAGCTCGTGGCTTAGCTTACCTGCATGAAGAAATGGATTTCCAGATAATTTTTCGAGATCTTAAAACATCTAATATTCTGTTAGATGAAAACTTCAATCCAAAATTATCAGATTTTGGATTGGCTAGGCAAGGACCAGCAGGAGGTATCAGTCATGTCTCGACAGCGGTTGTAGGCACTGTGGGATATGCAGCTCCAGAATATATTCAAACTGGCCATCTCACATCCAAGAGCGACGTTTGGAGTTTTGGAGTAGTGTTGTATGAACTACTTACAGGAAGGAGATCCATGGATAGAAACCGGCCAAAAAATGAACAAAAGCTTCTGGAATGGGTGAAGCCATATATATCAGATGCAAGAAAATTCCGTCTAATAATGGACCCCAGACTTGATGGTCAATACTCTCTCAAATTAGCACACAAAGTTGCGTCTCTGGCCAATAGTTGTTTAGTAAAGCATCCAAGATCTCGTCCTAAGATGAGTGAAGTGGTTGAGATATTGAAACAGATAGTAGAAGCTGCAGAAGCAGAAAGCCCTCAACCACCAATTGTTTGTGAAACTGTTGACAGCAGCACTGAGATTTTAACTGAGCCTGCAAAAGACACTGTCAATTCAAAGCGGCGAATGCTACTCCTGAGAGACATGATGAACCTTAGAAGTAGAGACAATGGCCGTCCTGCTTGGAGAGCATGGACTCCAAAGATGGTGAGAACATGGTAA___ATGAATTTCAACCAGAAGTGACTGCCAAACACAAAATTTTTAGTTACAATAATGAATCATAAAGTACTCCCATTCAGAACTGGGCAATCCATTTTGTGTTTATAGGTCAGATGTATAAATTTGCTTTTCTTGATATTTATTTCTCCTGAATTATTGATGTAAGCACATAGGATGGATTGTGTATTGTTTTTAATTTAGATTAAATCGTAAGAGTAACAACCATCTGTTTTGATTTATCAGAGATAATTGAAATTAGAAATTCTCAGTTCATCATAATTAGAAGCAGTCTACAATCCTCGAGCAGACTGCTTTTGTGGATTACAATTCTCATATGGATGAGCTTGTGTGGTATTCAAACCAACGTACGTGATTACTGCAGAGAATGGTTGTGATTCCTTCAAGATTCCTACCGCACATTTGAACGGTTATTACCATAAGACTAATCAATTAAGGCAATAAA

Fln Alignment:

Contig13205___MKCFHFSYAERERKEDARINKKSIWTRSLSGGSCPE--GRRSGSDINSQTISSDVSVDSPGPNITTSLSQRPPNSLRVFTYAELRAATKNFSRSLMLGEGGFGSVYRGLIKSL-DDPHAKVEVAVKQLNRKGLQGHKEWVTEVHFLGLVEHPNLVNLVGYCAEDDERGIQRLLVYEFMPNKSLEDHLLSRVLPALPWTLRLQIALGAARGLAYLHEEMDFQIIFRDLKTSNILLDENFNPKLSDFGLARQGPAGGISHVSTAVVGTVGYAAPEYIQTGHLTSKSDVWSFGVVLYELLTGRRSMDRNRPKNEQKLLEWVKPYISDARKFRLIMDPRLDGQYSLKLAHKVASLANSCLVKHPRSRPKMSEVVEILKQIVEAAEAESPQPPIVCETVDSSTEI
Q9LTC0_______________MNCLFLFKSKKPRKQQKDNNKNKRKGKELLQNSAPELTNRSETSSFNLQTPRS-----LPSPRSIKDLYTEREQNLRVFSYEELSKATYVFSRKLVIGEGGFGIVYKGKILSNGDSSDPPLVVAIKKLNRQGLQGHKQWLAEVQFLGVVNHPNVVKLIGYCSEDGETGIERLLVYEYMSNRSLEDHLFPRRSHTLPWKKRLEIMLGAAEGLTYLH---DLKVIYRDFKSSNVLLDDQFCPKLSDFGLAREGPDGDNTHVTTARVGTHGYAAPEYVQTGHLRLKSDVYSFGVVLYEIITGRRTIERNKPVAERRLLDWVKEYPADSQRFSMIVDPRLRNNYPAAGARSLAKLADLCLKKNDKERPTMEIVVERLKKIIE--ESDSEDYPMATTTTKESSQV

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
962	12		87		0.992554
974	88	11			0.923564
976	88			11	0.923564
977	88		11		0.923564
980	88	11			0.923564
1016	10			90	0.90298
1018	10			90	0.90298
1031		11		88	0.923564
1736		87		12	0.992554
1926	88		11		0.999937
1960		20		80	0.995493
1961	20			80	0.995493
1981	75		25		0.996473
2080		25		75	0.996473
2081	25		75		0.996473
2083	75			25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain