SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13204

Length: 3274 nt

UniGene Fasta

>sp_v3.0_unigene13204
CGATTATTTATCTCCGTCTTTCCATTCCTGAGCTCACTCTGTCTCCGCGGGGGGCCTGCCATATTTGTGCAAACTCCAACAAAAGAAGCCCGGCCTCTAAACGCCAATTCTACTCTGATTGCGAATTCAATTGAGTCCAATGCTTCTTCTGCAACAGAAGCGCCTGAAATCCCATAAATCCCATATAAAACAGGTGTCTGTGAAATCTCGTGTGTGGAGAAGGATCTTTTGTTAGTGGTTGGTGTGCGAAATCCACTGGGCGACAATGCTGGTCCAGGAACGAGCCAGTGCCAAGCCGTCGAAGAGCAGAAGTGCAGCTTATGTATCCTCTGATTCCCCATCGGATCCAGACTTAAAATCCCGTTCATGGAGTGGGAGTGGGAGTGGGGAGTGTTTTGGAAATGGCGTTTTACCCAAAGTGGTGATAATCGGCTTCATATTTCTCAGTGCCGTGGGCCTTCTATTCCTCCGCAACAGAGGCGACACAGCGGCGTTGCTATGTTTGGAGTCTAGGGCAACAGAGAAGGAAACGATCCCTTTTCCTGACGTGCATCAGTTCAAGGGCATCCAATTTATCAGTGACAAGAGCAAATACAGCATTGTTAAGACTGAGAAATGGATCGTGGTGGCCGTTAGGGGGCCACCTACAGAGGAAATCCGTCAATTGGTGAAGATCAGGGGATGGCAGGTGATAGCCGTGGGGGATTCCGATACGCCGCCCGACTGGAATGTGAAAGGTGCGATTTTTCTTTCTGTTGACCAGCAAGCTCTCTTGGGTTATCGGATCATCAACCATCTTCCTTATCATTCCTATATTAGGAAGACTGTAGGGTATTTGTTTGCTATTCAGCACGGGGCTAAGAAAATATATGATGCGGATGAACGAGGTATTGTAACTAATGGGAATCTGAGTACCCATTTCGACATTGAATTGATTGGAGAAGAGGCCCGCAGGGAACCGATTTTGCAGTATTCTAACAATTACAGAAAGAATAGGACTGTTGTCAACCCTTATATTCATTTTGGGCAGAGATCTGTTTGGCCTCGGGGATTGCCATTGGAGGATGTCGGTGATGTAAATCCCGAGGATTATTATGGAGAGGTTTACAGGGGGAAACAATTTATTCAGCAGGGCATTGCCAATGGGCTTCCAGATGTGGATTCCGTGTTTTATTACACTAGAAAGTCTGGAATTGAGGCATTTGATATTAAGTTTGATTCCCATGCTCCTCCTGTTGCACTTCCCCAGGGTATCATGACCCCTTTGAATTCATTCAATACGTTGATCCAAAGCCCTGCATTCTGGGGGCTCATGCTTCCAATATCGGTCAGCACGATGGCCTCTGACATACTCAGGGGCTACTGGGCACAGAGGATTTTGTGGGAAATTGGGGGTTATGTTGCCATTTATCCTCCCACCGTGCAGAGGTACGATCGGACACAGTCATATCCGTTTTCGGAGGAGAAGGATTTGCACGTCAATGTGGGTCGTTTGGTGAAGTTTCTCATCTCTTGGAGGTCGTCAAAACCGACATTATTTGAAAAGATTCTGCATTTGAGTCATTCGATGGCCGAGGAGGGGTTTTGGACAGCGCAGGACGTAATGTTTACGGCTGCGTGGCTACAGGATCTGCTGGCTGTGGGTTACCTTCAGCCAAGACTAATGACGTTGGAGCTGGACAGGCAAAGTTCAGTTCACATTCACGGGGATCATAAAGAATTTGTGCCTCTGAAGCTTCCTTCGGTGCATCTAGGAGTAGAGGAAGCTCATGCGATGAATTTTGAGATTGGAAACCTTATCAGATGGAGGAAATTTTATGGGAACATAGTGCTTATTATGCATTGCAGTGGATCTGTCAATCATACTGTTGTAGGGTGGAGAATGCTGTACGGACGCATATTTAAGAGTGTGGTTGTAGTCTCTGAGCAGACTAATCCAGATCTAGGAGTTGAATATGGTGAATGGTGGCAAGTCTACAAAGTCCTACCAAAAATATTTGAAAGGTACGCAAATGCAGATGGATTTATGTTTCTCAGGGATGACACAATACTCAACTACTGGAATCTCCTCCAAGCTGATAAAACCAGGCTCTGGATTACACACAAGGTTTCTTCATCTTGGGCAACAGCGAATATAGATTCCAATAGCACGGAATGGTATTTCAAAAATGGTGGTCGAGAAATTATTAAGAAGGTTTTGAATGAGTTGCCTGTCCACTTTCAGATTAAATACAGAGAAAGCATGGATGAGAAAAGTTTTGTGGTCTGCAGTTCTGAAATATTTTATGTTCCTCGACAGTTTGTTGGAGACTTTGTAGATCTTGTTTCTCTCGTCGGTGATTTAAGCCTTCACCATGAGGTTGCAGTACCTCTGTTTTTCCTTTCAATGGAGACACCTGATAAGTTTGATCCTGATGCCCTAAGCAAGACTATATATAAGAGAGGTGAAGCTTCTAATTCCTTGAGCTATTATTCAGCGGAAGTGCATGCTGTGAACCCTTGGAAGGTGTCAAATGAGTCTGATTTTGTGCGATTGCTTAAAGCAATGTCTTTGGGCGATCCTCTCCTTTTAGAGGTGCTCTGAAACTGATGCTGCAGCTGACAAAATAATAACTGGCCGGTAACCTACCTCTGGAGTTTTCAGTTGAAGAGGACCTTGTTTAATTCTTACCTGGTTTCTCAACAGTGGGTGAGTGTTGTCCTCTTAAAGCACCATTATGATGCTAAGGATTTTTTTCTCATATATATGTTCACCATGCCAAAGAGATCAGCTACTGTATATTTGGGCCTTGAAGATTTTCTGAAGGGTGGAGGTGGGGGGAAGGGGGTGCATGCTTTGAACCTCAATTGTTTCATGGAGCTTATGCTGTCAAAGGCTGAGCGCTTTCCCATATGTATTTATCTTCCCTACCAATGAGCTATGCTCAATGTAACTGGCCCAAAGGCTTGATTTTTTAAATTGTTGGTGAAAATTTGTCTCAAGATTTTCCAATGCACCTCCCTTTGCAAGGATGAAGGTAATTAGCTACTACATGGTTCTGGTATTAAATTATTGAGATTCCAATTCCGTCAGTGATTGACTTCATTTAAACTATTGTTAGTACCTGATCAACATGCTTGACTGTTCTCGCATTCAGAGGAACTAAGAGATCTATGTTGTACTGCTTGGAACCGTGAGATATAGCTATTGAGAGGGACAAGGAAAGAGAGAACTTGTAAGTTATTTTGATTTCCGTCCAGAAAAACGAGTTAGCTTGAACTCTATAAGAACCTT

Ace file of the UniGene sp_v3.0_unigene13204

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF288 domain containing protein	-	-	2.0e-07	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%

Source	Gene names
Sma3	At2g41770; At3g57420; GSVIVT00025596001; GSVIVT00028737001; OJ1764_D01.2; Os05g0391200; Os07g0656400; OsI_19835; OsI_27165; OsJ_18425; OsJ_25418; P0018C07.137; P0047B07.111; PHYPADRAFT_127388; PHYPADRAFT_179118; POPTRDRAFT_819058; POPTRDRAFT_825115; RCOM_

Source	GOs	Term	Type	e value	Identity
Sma3	cell wall	GO:0005618	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF288	IPR005049	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G57420.1	Protein of unknown function (DUF288) chr3:21252605-21255115 REVERSE LENGTH=765	62%
RefSeq	Arabidopsis thaliana	NP_191301.1	uncharacterized protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002308029.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC98

Fln msg: your sequence is longer than subject: 773 - 269

Fln protein: MLVQERASAKPSKSRSAAYVSSDSPSDPDLKSRSWSGSGSGECFGNGVLPKVVIIGFIFLSAVGLLFLRNRGDTAALLCLESRATEKETIPFPDVHQFKGIQFISDKSKYSIVKTEKWIVVAVRGPPTEEIRQLVKIRGWQVIAVGDSDTPPDWNVKGAIFLSVDQQALLGYRIINHLPYHSYIRKTVGYLFAIQHGAKKIYDADERGIVTNGNLSTHFDIELIGEEARREPILQYSNNYRKNRTVVNPYIHFGQRSVWPRGLPLEDVGDVNPEDYYGEVYRGKQFIQQGIANGLPDVDSVFYYTRKSGIEAFDIKFDSHAPPVALPQGIMTPLNSFNTLIQSPAFWGLMLPISVSTMASDILRGYWAQRILWEIGGYVAIYPPTVQRYDRTQSYPFSEEKDLHVNVGRLVKFLISWRSSKPTLFEKILHLSHSMAEEGFWTAQDVMFTAAWLQDLLAVGYLQPRLMTLELDRQSSVHIHGDHKEFVPLKLPSVHLGVEEAHAMNFEIGNLIRWRKFYGNIVLIMHCSGSVNHTVVGWRMLYGRIFKSVVVVSEQTNPDLGVEYGEWWQVYKVLPKIFERYANADGFMFLRDDTILNYWNLLQADKTRLWITHKVSSSWATANIDSNSTEWYFKNGGREIIKKVLNELPVHFQIKYRESMDEKSFVVCSSEIFYVPRQFVGDFVDLVSLVGDLSLHHEVAVPLFFLSMETPDKFDPDALSKTIYKRGEASNSLSYYSAEVHAVNPWKVSNESDFVRLLKAMSLGDPLLLEVL*

Protein Length: 774

Fln nts: CGATTATTTATCTCCGTCTTTCCATTCCTGAGCTCACTCTGTCTCCGCGGGGGGCCTGCCATATTTGTGCAAACTCCAACAAAAGAAGCCCGGCCTCTAAACGCCAATTCTACTCTGATTGCGAATTCAATTGAGTCCAATGCTTCTTCTGCAACAGAAGCGCCTGAAATCCCATAAATCCCATATAAAACAGGTGTCTGTGAAATCTCGTGTGTGGAGAAGGATCTTTTGTTAGTGGTTGGTGTGCGAAATCCACTGGGCGACA_-_ATGCTGGTCCAGGAACGAGCCAGTGCCAAGCCGTCGAAGAGCAGAAGTGCAGCTTATGTATCCTCTGATTCCCCATCGGATCCAGACTTAAAATCCCGTTCATGGAGTGGGAGTGGGAGTGGGGAGTGTTTTGGAAATGGCGTTTTACCCAAAGTGGTGATAATCGGCTTCATATTTCTCAGTGCCGTGGGCCTTCTATTCCTCCGCAACAGAGGCGACACAGCGGCGTTGCTATGTTTGGAGTCTAGGGCAACAGAGAAGGAAACGATCCCTTTTCCTGACGTGCATCAGTTCAAGGGCATCCAATTTATCAGTGACAAGAGCAAATACAGCATTGTTAAGACTGAGAAATGGATCGTGGTGGCCGTTAGGGGGCCACCTACAGAGGAAATCCGTCAATTGGTGAAGATCAGGGGATGGCAGGTGATAGCCGTGGGGGATTCCGATACGCCGCCCGACTGGAATGTGAAAGGTGCGATTTTTCTTTCTGTTGACCAGCAAGCTCTCTTGGGTTATCGGATCATCAACCATCTTCCTTATCATTCCTATATTAGGAAGACTGTAGGGTATTTGTTTGCTATTCAGCACGGGGCTAAGAAAATATATGATGCGGATGAACGAGGTATTGTAACTAATGGGAATCTGAGTACCCATTTCGACATTGAATTGATTGGAGAAGAGGCCCGCAGGGAACCGATTTTGCAGTATTCTAACAATTACAGAAAGAATAGGACTGTTGTCAACCCTTATATTCATTTTGGGCAGAGATCTGTTTGGCCTCGGGGATTGCCATTGGAGGATGTCGGTGATGTAAATCCCGAGGATTATTATGGAGAGGTTTACAGGGGGAAACAATTTATTCAGCAGGGCATTGCCAATGGGCTTCCAGATGTGGATTCCGTGTTTTATTACACTAGAAAGTCTGGAATTGAGGCATTTGATATTAAGTTTGATTCCCATGCTCCTCCTGTTGCACTTCCCCAGGGTATCATGACCCCTTTGAATTCATTCAATACGTTGATCCAAAGCCCTGCATTCTGGGGGCTCATGCTTCCAATATCGGTCAGCACGATGGCCTCTGACATACTCAGGGGCTACTGGGCACAGAGGATTTTGTGGGAAATTGGGGGTTATGTTGCCATTTATCCTCCCACCGTGCAGAGGTACGATCGGACACAGTCATATCCGTTTTCGGAGGAGAAGGATTTGCACGTCAATGTGGGTCGTTTGGTGAAGTTTCTCATCTCTTGGAGGTCGTCAAAACCGACATTATTTGAAAAGATTCTGCATTTGAGTCATTCGATGGCCGAGGAGGGGTTTTGGACAGCGCAGGACGTAATGTTTACGGCTGCGTGGCTACAGGATCTGCTGGCTGTGGGTTACCTTCAGCCAAGACTAATGACGTTGGAGCTGGACAGGCAAAGTTCAGTTCACATTCACGGGGATCATAAAGAATTTGTGCCTCTGAAGCTTCCTTCGGTGCATCTAGGAGTAGAGGAAGCTCATGCGATGAATTTTGAGATTGGAAACCTTATCAGATGGAGGAAATTTTATGGGAACATAGTGCTTATTATGCATTGCAGTGGATCTGTCAATCATACTGTTGTAGGGTGGAGAATGCTGTACGGACGCATATTTAAGAGTGTGGTTGTAGTCTCTGAGCAGACTAATCCAGATCTAGGAGTTGAATATGGTGAATGGTGGCAAGTCTACAAAGTCCTACCAAAAATATTTGAAAGGTACGCAAATGCAGATGGATTTATGTTTCTCAGGGATGACACAATACTCAACTACTGGAATCTCCTCCAAGCTGATAAAACCAGGCTCTGGATTACACACAAGGTTTCTTCATCTTGGGCAACAGCGAATATAGATTCCAATAGCACGGAATGGTATTTCAAAAATGGTGGTCGAGAAATTATTAAGAAGGTTTTGAATGAGTTGCCTGTCCACTTTCAGATTAAATACAGAGAAAGCATGGATGAGAAAAGTTTTGTGGTCTGCAGTTCTGAAATATTTTATGTTCCTCGACAGTTTGTTGGAGACTTTGTAGATCTTGTTTCTCTCGTCGGTGATTTAAGCCTTCACCATGAGGTTGCAGTACCTCTGTTTTTCCTTTCAATGGAGACACCTGATAAGTTTGATCCTGATGCCCTAAGCAAGACTATATATAAGAGAGGTGAAGCTTCTAATTCCTTGAGCTATTATTCAGCGGAAGTGCATGCTGTGAACCCTTGGAAGGTGTCAAATGAGTCTGATTTTGTGCGATTGCTTAAAGCAATGTCTTTGGGCGATCCTCTCCTTTTAGAGGTGCTCTGA___AACTGATGCTGCAGCTGACAAAATAATAACTGGCCGGTAACCTACCTCTGGAGTTTTCAGTTGAAGAGGACCTTGTTTAATTCTTACCTGGTTTCTCAACAGTGGGTGAGTGTTGTCCTCTTAAAGCACCATTATGATGCTAAGGATTTTTTTCTCATATATATGTTCACCATGCCAAAGAGATCAGCTACTGTATATTTGGGCCTTGAAGATTTTCTGAAGGGTGGAGGTGGGGGGAAGGGGGTGCATGCTTTGAACCTCAATTGTTTCATGGAGCTTATGCTGTCAAAGGCTGAGCGCTTTCCCATATGTATTTATCTTCCCTACCAATGAGCTATGCTCAATGTAACTGGCCCAAAGGCTTGATTTTTTAAATTGTTGGTGAAAATTTGTCTCAAGATTTTCCAATGCACCTCCCTTTGCAAGGATGAAGGTAATTAGCTACTACATGGTTCTGGTATTAAATTATTGAGATTCCAATTCCGTCAGTGATTGACTTCATTTAAACTATTGTTAGTACCTGATCAACATGCTTGACTGTTCTCGCATTCAGAGGAACTAAGAGATCTATGTTGTACTGCTTGGAACCGTGAGATATAGCTATTGAGAGGGACAAGGAAAGAGAGAACTTGTAAGTTATTTTGATTTCCGTCCAGAAAAACGAGTTAGCTTGAACTCTATAAGAACCTT

Fln Alignment:

Contig13204___MNFEIGNLIRWRKFYGNIVLIMHCSGSVNHTVVGWRMLYGRIFKSVVVVSEQTNPDLGVEYGEWWQVYKVLPKIFERYANADGFMFLRDDTILNYWNLLQADKTRLWITHKVSSSWATANIDSNSTEWYFKNGGREIIKKVLNELPVHFQIKYRESMDEKSFVVCSSEIFYVPRQXXXXXXXXXXXXXXXXXHHEVAVPLFFLSMETPDKFDPDALSKTIYKRGEASNSLSYYSAEVHAVNPWKVSNESDFVRLLKAMSLGDPLLLEVL
D5AC98_______________MNFEIGNLIRWRKFYGNIVLIMHCSGPVNHTVLGWRMLYGRIFKSVVVVSEQSNPDLGVEYGEWWQVYKVLPKIFERYTNADGFMFLKDDTILNYWNLLQADKTRLWITHKVSSSWEIANIDSNSTAWYFRNGGREIVKKVLKDLPVHFQIKYRESMDEKSFVVCSSEIFYVPRQFVGDFVDLVSLVGELSLHHEVAVPLFFLSMETPDKFDPDALSNTVYKRGKASDSLSYYSAEVHAVNPWKVSNESDFVRLLKAMSLGDPLLLEVL

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
125	75			25	0.996473
230		33		66	0.997452
319			25	75	0.996473
321	75	25			0.996473
325	75		25		0.996473
326	25			75	0.996473
330		75		25	0.996473
331			25	75	0.996473
333	75	25			0.996473
335			25	75	0.996473
336		75		25	0.996473
338	25	75			0.996473
343	33		66		0.997452
2198			11	88	0.923564
2234	88			11	0.923564
2398		75		25	0.996473
2509	10		90		0.90298
2512			10	90	0.90298
2513		90	10		0.90298
2597			88	11	0.923564
2919	50			50	1.0
2953	10			90	0.90298
2959	77			22	0.999999
2962	22			77	0.999999
3193	50		50		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
369	388	GGAGTG GGAGTG GGAGTG GG	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain