SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13162

Length: 2865 nt

UniGene Fasta

>sp_v3.0_unigene13162
ATGGGGAAATCTTAAAATATTAAGCCTCCAAATCCTTTGATAAACGGCAAAAGTCCTACTTAGAGAAAACCCCATCTTGTCAATAAATGCCCAATTCTTTTCCCATCCCTATCCGTAGAAACAGGTGGGACTGTAATCTGGTTTATCTGCAGATGACATGGAATTAATTAGGATGCCAGTGTAATGAGGTGATTAAATAGAATGTTATAGTCTGCGTGGTGGGATCCTTCAATCCAAGGGCGGAAAGGCCGTTGCAAAATAAGTCCCAATGGGAGAATCTGCATAATCGAAACTTCCCTGTACTATTCACAAAAGGACCTTGATCTGCGATATCAAACTCAAAATTCATACGGACCTGAAGAAGCTGTTGACGAGTGACCCTACAACAGTGATGATATTGTCCTCCTGCATAGTGCTTTAAAGATACCATTTTAAACAGAAACAACTGTCCAGCAGCACTTCAAATGAAATGGAGACTAGCAGGGCTGAAGGTTCAGATCCCGCTCCAATAGACACAACTTCTATATTGCCTCCTTCTAATCCTCAGTCACCTAATGATCATTCCACATCAAGATTTTCACCATCTGGTTTTTCAACATGGGCAAAAAGCTTCAAATTTTCACAACCCTCAGCTCCGGAGATTGCACAGCCTGTGGATGGTAAGAAATCTCCATTTGGTCGCTTAGCCAGTGGATTAGGTATACGATCATCTTCTAAGATTCCAGTTGTTGACGATCCTACGGAAGATTCAACACAAGTTGCAGTCACGCAGGAAGGTGCACTTGGGACCATCACAAAAGGATTCTTGGACACATCAAAAAATGCAATGAGGGCTGTTCAAATCAAAGCTCGGCACATTGTGTCACAGAACAAAAGGAGATATCAGGAAGGTGGTTTTGATTTGGATATGACATATATTACTGAAAACATAATTGCTATGGGTTTTCCTGCTGGCGACATCAGTTCTGGTATTTTTGGATATGTGGAGGGGTTTTATCGGAATCATATGGAAGAGGTTATGAAGTTTTTTGAAAGTCATCACAAGGGAAAATACAAAGTGTACAACCTTTGCTCTGAAAGATTATACGATGCTTCACTGTTTGAAGGGAAGGTTGCTTGCTTCCCCTTTGATGACCATAATTGCCCTCCAATTCAACTCATAGTATCATTTTGTCAAAGTGCTTACTCATGGCTGAAGGAAGATATTGAGAATGTAGTAGTTGTTCATTGTAAAGCTGGCATGGCTAGAACAGGGCTCATGATATCGAGTCTTCTTCTTTACCTCAAGTTCTACCCCACTGCTGAAGAATCCATTGCTTATTACAACCAGAAACGGTGTATAGATGGCAAGGGTCTTGTTCTTCCAAGCCAAATTCGCTATGTAAAATATTTTGAACGAGTGCTCACATATTTCAATGGTGAAGTTCAACCTGGTAGGAGATGTATACTTCGGGGATTCCGTCTTCATAAATGCCCTTACTGGGTTCGACCATCTATTACAGTATCTGATCATAATGGAGTTCTCTTTTCAACAAAGAAGCATCCAAGGACAAAGGATATGATGCCAGATGATTTTTGGTTTAGTGCACCAAGGAAAGGAATCATGGTATTTGCTTTGCCAGGAGAAAGGGGTCTTACAGAGTTAAGCGGTGACTTCAAAGTTCACTTTCATGATCGTCATGGTGATTTTTACTGTTGGTTAAACACAACAATGATGGAGAACAGGCAAATTCTAAACACCGCTGATCTTGATGGTTTTGACAAGAGGAAACTGCCATGTCCAGGGTTTCAGGTTGAGGTTGTGGTGATGGATTATGATGCTCCAGTACCTTCCAAATCTAGAGGTGGCACAGTTACTGGAATGATCAGTCCAAGTGTGCTAGAAGGAAGACCAACTCAGACTAGTGACAGCAATGAACCTATACCATCAATGGAAGGCAATGAAGGCCAAGAAAAAGATGACATATTTTCAGACAGTGAAACTGAAGAAAATGGATTTTCAAAGATGAGACGGGAAAACGTCCCTCATACAGAAGAATCTGGTGCTGTATCTAGTGATTCCACTGAAAGATCTAAAGAACCAGTAGTGGAAAAGAGCAATTTGGTAAATATTACGCATGGCATTGAATCATCCTGTCAAGTATCTTCGAAAAATGAACCAAGTCCAGATGAAACCAATGCAAGTAAAGAACATATTCCGAATCAGAAAGATACTCAAGGTGATTCTAAAAGTGGCAAAAATCAGGGTGATGGCTCTAGCAGTTTAGAGACATCCTATATGCAGGAGGCTGGGAAGTCAGACACAGTTATAGCCAGTGATTTTAAGGCTATTGCTGCAGATGCATCGGTTTTCACATTTGGTGATGAAGAAGACTATGAAAGTGATTAATTGGTAAAAAATATATCACAGAAAATTCTGATGAAATAATTGATTGGTTCTGACAAATAAGGCTTGGTTTCAAAAACTTTGCAATGCAAGCAAATTATGACTTGCAGTTTCTTCAATTAGTTTATGTAAAGTACTGTATCTTCTAGGAAGACAGATTTTTTTCTCGTCCCACAAAGCCTGGAATTCTTGATTGTAGCATATGATTGGCTTGTTTTGTTATGAAAGCATTGTGCGTTCTGCTGTATCTATTCTATAGGAAGGCATGCCTATAACTTGTACTCAGTTTTAATATGGTGTTTAACACTTTGTTAGGCATGCTATCATTAGAAGAGGCCTTTGGTTAGATTCTCATTCATATTATTGTTTTGTGGGGTAGGTTATACCAAGTATATCTTTTGGATGCGCTCTTTTAGATAATGTAAATTATTTTAATCCATTATCTGCTTGAAGAAGAGGATTATTAGAAGTTCATGATT

Ace file of the UniGene sp_v3.0_unigene13162

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PTEN-like protein [Arabidopsis thaliana]	-	-	0.0	59%
FL-Next	tr=Phosphoprotein phosphatase, putative; Ricinus communis (Castor bean).	-	-	0.0	61%

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase.	EC:3.1.3.67	-	3.602e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Inositol phosphate metabolism	00562		3.602e-13	%
Sma3	Phosphatidylinositol signaling system	04070		3.602e-13	%

Source	Gene names
Sma3	At3g19420; At3g50110; F3A4.190; GSVIVT00019556001; GSVIVT00030693001; GSVIVT00036636001; LOC_Os12g21870; LOC_Os12g21890; Os12g0407200; Os12g0407500; OsI_38062; OsJ_35839; PHYPADRAFT_11763; PHYPADRAFT_140952; PHYPADRAFT_173463; PHYPADRAFT_233117; POPTRDRAF

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein tyrosine phosphatase activity	GO:0004725	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein tyrosine/serine/threonine phosphatase activity	GO:0008138	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-
Sma3	dephosphorylation	GO:0016311	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Dual specificity phosphatase, catalytic domain	IPR000340	-	-
Sma3		IPR000442	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Phosphatase tensin type	IPR014019	-	-
Sma3	Tensin phosphatase, C2 domain	IPR014020	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G19420.1	ATPEN2, PEN2 PTEN 2 chr3:6731824-6735354 FORWARD LENGTH=611	59%
RefSeq	Arabidopsis thaliana	NP_188573.1	phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002310706.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RYC0

Fln msg:

Fln protein: METSRAEGSDPAPIDTTSILPPSNPQSPNDHSTSRFSPSGFSTWAKSFKFSQPSAPEIAQPVDGKKSPFGRLASGLGIRSSSKIPVVDDPTEDSTQVAVTQEGALGTITKGFLDTSKNAMRAVQIKARHIVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDISSGIFGYVEGFYRNHMEEVMKFFESHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPIQLIVSFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFYPTAEESIAYYNQKRCIDGKGLVLPSQIRYVKYFERVLTYFNGEVQPGRRCILRGFRLHKCPYWVRPSITVSDHNGVLFSTKKHPRTKDMMPDDFWFSAPRKGIMVFALPGERGLTELSGDFKVHFHDRHGDFYCWLNTTMMENRQILNTADLDGFDKRKLPCPGFQVEVVVMDYDAPVPSKSRGGTVTGMISPSVLEGRPTQTSDSNEPIPSMEGNEGQEKDDIFSDSETEENGFSKMRRENVPHTEESGAVSSDSTERSKEPVVEKSNLVNITHGIESSCQVSSKNEPSPDETNASKEHIPNQKDTQGDSKSGKNQGDGSSSLETSYMQEAGKSDTVIASDFKAIAADASVFTFGDEEDYESD*

Protein Length: 641

Fln nts: ATGGGGAAATCTTAAAATATTAAGCCTCCAAATCCTTTGATAAACGGCAAAAGTCCTACTTAGAGAAAACCCCATCTTGTCAATAAATGCCCAATTCTTTTCCCATCCCTATCCGTAGAAACAGGTGGGACTGTAATCTGGTTTATCTGCAGATGACATGGAATTAATTAGGATGCCAGTGTAATGAGGTGATTAAATAGAATGTTATAGTCTGCGTGGTGGGATCCTTCAATCCAAGGGCGGAAAGGCCGTTGCAAAATAAGTCCCAATGGGAGAATCTGCATAATCGAAACTTCCCTGTACTATTCACAAAAGGACCTTGATCTGCGATATCAAACTCAAAATTCATACGGACCTGAAGAAGCTGTTGACGAGTGACCCTACAACAGTGATGATATTGTCCTCCTGCATAGTGCTTTAAAGATACCATTTTAAACAGAAACAACTGTCCAGCAGCACTTCAAATGAA_-_ATGGAGACTAGCAGGGCTGAAGGTTCAGATCCCGCTCCAATAGACACAACTTCTATATTGCCTCCTTCTAATCCTCAGTCACCTAATGATCATTCCACATCAAGATTTTCACCATCTGGTTTTTCAACATGGGCAAAAAGCTTCAAATTTTCACAACCCTCAGCTCCGGAGATTGCACAGCCTGTGGATGGTAAGAAATCTCCATTTGGTCGCTTAGCCAGTGGATTAGGTATACGATCATCTTCTAAGATTCCAGTTGTTGACGATCCTACGGAAGATTCAACACAAGTTGCAGTCACGCAGGAAGGTGCACTTGGGACCATCACAAAAGGATTCTTGGACACATCAAAAAATGCAATGAGGGCTGTTCAAATCAAAGCTCGGCACATTGTGTCACAGAACAAAAGGAGATATCAGGAAGGTGGTTTTGATTTGGATATGACATATATTACTGAAAACATAATTGCTATGGGTTTTCCTGCTGGCGACATCAGTTCTGGTATTTTTGGATATGTGGAGGGGTTTTATCGGAATCATATGGAAGAGGTTATGAAGTTTTTTGAAAGTCATCACAAGGGAAAATACAAAGTGTACAACCTTTGCTCTGAAAGATTATACGATGCTTCACTGTTTGAAGGGAAGGTTGCTTGCTTCCCCTTTGATGACCATAATTGCCCTCCAATTCAACTCATAGTATCATTTTGTCAAAGTGCTTACTCATGGCTGAAGGAAGATATTGAGAATGTAGTAGTTGTTCATTGTAAAGCTGGCATGGCTAGAACAGGGCTCATGATATCGAGTCTTCTTCTTTACCTCAAGTTCTACCCCACTGCTGAAGAATCCATTGCTTATTACAACCAGAAACGGTGTATAGATGGCAAGGGTCTTGTTCTTCCAAGCCAAATTCGCTATGTAAAATATTTTGAACGAGTGCTCACATATTTCAATGGTGAAGTTCAACCTGGTAGGAGATGTATACTTCGGGGATTCCGTCTTCATAAATGCCCTTACTGGGTTCGACCATCTATTACAGTATCTGATCATAATGGAGTTCTCTTTTCAACAAAGAAGCATCCAAGGACAAAGGATATGATGCCAGATGATTTTTGGTTTAGTGCACCAAGGAAAGGAATCATGGTATTTGCTTTGCCAGGAGAAAGGGGTCTTACAGAGTTAAGCGGTGACTTCAAAGTTCACTTTCATGATCGTCATGGTGATTTTTACTGTTGGTTAAACACAACAATGATGGAGAACAGGCAAATTCTAAACACCGCTGATCTTGATGGTTTTGACAAGAGGAAACTGCCATGTCCAGGGTTTCAGGTTGAGGTTGTGGTGATGGATTATGATGCTCCAGTACCTTCCAAATCTAGAGGTGGCACAGTTACTGGAATGATCAGTCCAAGTGTGCTAGAAGGAAGACCAACTCAGACTAGTGACAGCAATGAACCTATACCATCAATGGAAGGCAATGAAGGCCAAGAAAAAGATGACATATTTTCAGACAGTGAAACTGAAGAAAATGGATTTTCAAAGATGAGACGGGAAAACGTCCCTCATACAGAAGAATCTGGTGCTGTATCTAGTGATTCCACTGAAAGATCTAAAGAACCAGTAGTGGAAAAGAGCAATTTGGTAAATATTACGCATGGCATTGAATCATCCTGTCAAGTATCTTCGAAAAATGAACCAAGTCCAGATGAAACCAATGCAAGTAAAGAACATATTCCGAATCAGAAAGATACTCAAGGTGATTCTAAAAGTGGCAAAAATCAGGGTGATGGCTCTAGCAGTTTAGAGACATCCTATATGCAGGAGGCTGGGAAGTCAGACACAGTTATAGCCAGTGATTTTAAGGCTATTGCTGCAGATGCATCGGTTTTCACATTTGGTGATGAAGAAGACTATGAAAGTGATTAA___TTGGTAAAAAATATATCACAGAAAATTCTGATGAAATAATTGATTGGTTCTGACAAATAAGGCTTGGTTTCAAAAACTTTGCAATGCAAGCAAATTATGACTTGCAGTTTCTTCAATTAGTTTATGTAAAGTACTGTATCTTCTAGGAAGACAGATTTTTTTCTCGTCCCACAAAGCCTGGAATTCTTGATTGTAGCATATGATTGGCTTGTTTTGTTATGAAAGCATTGTGCGTTCTGCTGTATCTATTCTATAGGAAGGCATGCCTATAACTTGTACTCAGTTTTAATATGGTGTTTAACACTTTGTTAGGCATGCTATCATTAGAAGAGGCCTTTGGTTAGATTCTCATTCATATTATTGTTTTGTGGGGTAGGTTATACCAAGTATATCTTTTGGATGCGCTCTTTTAGATAATGTAAATTATTTTAATCCATTATCTGCTTGAAGAAGAGGATTATTAGAAGTTCATGATT

Fln Alignment:

Contig13162___METSRAEGSDPA----PIDTTSILPPSNPQSPNDHSTSRFSPSGFSTWAKSFKFSQPSAPEIAQPVDGK--KSPFGRLASGLGIRSSSKIPVVDDPTEDSTQVAVTQEGALGTITKGFLDTSKNAMRAVQIKARHIVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDISSGIFGYVEGFYRNHMEEVMKFFESHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPIQLIVSFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFYPTAEESIAYYNQKRCIDGKGLVLPSQIRYVKYFERVLTYFNGEVQPGRRCILRGFRLHKCPYWVRPSITVSDHNGVLFSTKKHPRTKDMMPDDFWFSAPRKGIMVFALPGERGLTELSGDFKVHFHDRHGDFYCWLNTTMMENRQILNTADLDGFDKRKLPCPGFQVEVVVMDYDAPVPSKSRGGTVTGMISPSVLEGRPTQTSDSNEPIPSMEGNE----GQEKDDIFSDSETEENGFSKMRRENVPHTEESGAVSSDSTERSKEPVVEKSNLVNITHGIESSCQVSSKNEPSPDETNASKEHIPNQKDTQGDSKSGKNQGDGSSSLETSYMQEAGKSDTVIASDFKAIAADASVFTFGDEEDYESD
B9RYC0_______________MDSGSVDSSTPSVKAPDIQPPTVADPGPDNSPRD-APSKLSAAGIASWAKSLKIPQPSAASQDDSPTGNTGKSTFARFTSGLGLRLSPKSPAADDSPEGTSPTSL-QPGFIGTITKGLVDTSKNAVKAVQVKARHAVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKLASFPFDDHNCPPIQLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCFDAKGLVLPSQIRYVKYFERTLTYFNGENQPGRRCMLRGFRLHRCPYWIRPSITVSDHNGVLFSTKKHPRTKDLSPEDYWFSAPKKGVMVFALPGEPGLAEVAGDFKVHFHDRQGDFYFWLNTTMMENRKVLNTNDIDGFDKRKLPSPGFQVEVVLVDYSGTTPAGTNSETATNKSN----EG--SSAAPAPDPAPAVRSQNKDRGSTEKDDVFSDSEAEESVSSKFRQ---AQAASAGGKSATSTTSSSETNTKSDQIASLTHATEHF-----------SIGNTGSQQMHNSGQPKSDAVGGVVSGVEVNNSE---------------SEFKVMAADASVFTFGDDEDYESE

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
510		90		10	0.90298
514	90		10		0.90298
532	90			10	0.90298
673	88		11		0.923564
1149	12		87		0.992554
1151	12	87			0.992554
1152		87		12	0.992554
1563	80		20		0.995493
1938		10		89	0.999919
2471	84	5			0.999846
2550	87			12	0.992554
2638	11	5		83	0.999887
2716		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain