SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13160

Length: 2924 nt

UniGene Fasta

>sp_v3.0_unigene13160
CCCTAAACAAACTGCTAGATCTGAAAGGAAACATCCGTGTTTTTTGTCGAGTGAGGCCTTTCCTCTTTAGTGAGAAGCAGGCAATACCTGGGCCTCTTGCAGTTCCTGATCTAGACAAAGTGGTCATAAAATTAGCTGGAGGGAAAACTAAAGAATACAACTTTGACAAGGTTTTCCTTCCTGATGCTTCACAAGATGAAATCTTTACAGAAGTGGAGCCAATTATCAGATCAGCTTTGGATGGACACAATGTATGCATTTTTGCCTATGGACAGACAGGGACTGGCAAAACTTTTACTATGGAAGGCACGCCAGATTGTCCTGGGATTGTTCCCCATATGATACAAGAACTATTTCATCAGGCCTCTCTGGACAGGACTGTTAGCTTCACATTCTCATTTAGCATGCTAGAACTATACATGGGACACTTGAGGGATTTACTTACCTCTCAATCAACAAATCTTTCTATCCAAATGGATGCAAAGGGTACCGTTGAAATTGAGAACCTAAGGGAAGTGATCATGACCAATTTCAGCCAAGCAAGAAAATTGTATAGCAAAGGTAGCAGAGCTCGATCTACAGCTTGGACCAATGCCAATGAGTCATCTAGTAGATCACATTGTTTAATCAGGATTGCTATCAGTTGCTCGGGTGCTCCAGAAAGATACAGAGATACCAGCAAGCTTTGGATGGTAGATCTTGGTGGAAGTGAACGTTTGCAAAAGACACAGGCCACAGGTCAGACTATGGAGGAAGGGAAGGCGATAAATATGTCCCTCTCAGCTCTTGGTGATGTGATTAGTGCATTACAGAATAAGCAAGCTCACATTCCTTATAGGAACAGCAAACTTACGCAAATCCTAAGAGACTCAATAGGAGAAGACTCAAAAACGTTGATGCTTGTCCATATTAGTCCCAAGGCAGATGATTTAAGTGAGACGATTTGTTCTTTGAGTTTTGCAACTAGAGCAAGGGGGGTTCACCTTGGACGAGAACTATCTTATGAAGTCAAAGTTCAGACAGAAGCAAACATGGTTGAACTGATGCAGAAGATGAGATGCCTTGAAGATGACTGCCAAAGTGCAAGAAACAATATTCAAACCGTTGAGTTTCTTCTGAGAGAAAAGAAGAAACATCTTGCAAAGAGTGATCCATCCTTAGGGTACCAGGAAACAGCAGATAGTCAAGCTAGTCAAGAAACAGAGATGACATACAATATTGAATTAGGGAATGTAGCAGAAGGGTCCGTGGGCTTGCCCAGATATATGAATGCCACAGCCTGTAGTCGCATCCGAGGTAAGTCAGTGGATGCAGAATTCAAAACTCCAGGCGTAATGAAAAAGAGAATGCAATTGAGTAATGAAAGGAAAAAATCCTTATCAGGGAATGCCAAAAGTATGATTTTTCCCGAGATGGATCAATCAGTTTGTGGTTCAGAAAGCTATGTATCTAATGACAGTGTTCTTACGCATTCCTCACTGCCCAACAAAAAGAAAATGAATAGAATTTATTCTAAGAGGTGTGGTATTGATGAATTCCTATGCTTTTCAGAGAGAACTCCACCCAAGGTTGGTGGAATCTCCAAAAATAAGATTAGGACTGGAATTTATTCCAAGCAGAGTACCATTTCTGAATCGCAATGCTCTTCTGAGGGTAAGACACCCATGGGCAAGGCCAGTGAAAAATATTATAAGCAGTATACTATTGATCAATCCCAATGCCTTTCAGAGTGTAATACTCCTAAAGATAGTGGATTGCCCGAACATGAGGTGATTGGTGCATATTCTGAGGAGTTTACCATTGCCGAGTACCAGTTCTTGTCAGAGTGCAATACACCCGAGAGCAAACGAGTGCGTTCATCAATTCCACGCTGTAAAAGGGTGATTGCTTTCCAAACATCACCCAATAAAACACCGAACAAAGATATTTCATCTACTCCTGCTGTTGAGAAAACAGAACTGACGTTGACAAAGGAAGTTATGTACAGCGGGCCTATAAACGATAAGAATGAAGACGATTCAAATCCATCTCAAAATGAACAGAACTGCAAACAATTACCCATGCCAACATTATCAAAACCTATCTCACAATCCCCCATGGAAGAAAATGAGATGAAGGAACTAGAAAATGAGATGAAGGAACTATGTAAACAAGAAATAGCAATAGCAGTGGCAGCAACAGCAGCAATACCGAAAGGAACGGCAACGATGGAAATGGAAACAAAAGCTAAAACAGCAACAATATCAATGACAGCAACAAAAGAAACAACAGGATTCTGCTTTCATATGGCGAAGATGGTGCATATACTATTGTCCGGCGCTTGTTTAGGGGTGGGGTTACTGAACTTGGGACTCGAGGATGACTTTTTCTTTGGACTGCTGCTCTGAAGAAGCTCATACACGTGAATCGCAGTAATTTATACCTGGATCATTCATCCGTATCAAAATTAGGATCGTGTTCCCCTGTCTGGAATATTTTTTGGGTATAGTGGATTGTGTATAACCCAATACAGAGTCCCATCACATATAGAAGACTTATATTATACAAGGATATTAATTTATTGGAAGATGTCGCAAGCTTGGTGTGTGCCCTCAATAAACAGGTGGAAGCAAACGACTTGCTCCCGATAAATGCTCTCAGCCCGGGTTTTAAACCTCCGCAAATTGCATGTTGTGTGAGAGAAGGCTGGGATTTAGCAGGGTTTTGTATATTTTACACAGAAGTGGGTTGGGGTTTGAACTAGGTTTTGTATATTCTAATTTGACAGAACTGAGTTGGGATTTGAACTAGGTTTTGTATATATTGTGTAGATAATGATTTATGATGGGACACAGATACTGTATGATGTTACAATAGTAAATTATCCTTGTTCATGAACTGTACAAATTTATATTTATGTTGAAAGATATTTTTGTGTTGGATCT

Ace file of the UniGene sp_v3.0_unigene13160

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BY-2 kinesin-like protein 5 [Nicotiana tabacum]	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Sma3	Kinesin-like calmodulin binding protein	-	-	1.178e-10	-

Source	Gene names
Sma3	117M18_26; AT4g05190; ATK1; ATK2; ATK4; At1g55550; At2g47500; At4g05190; At4g21270; At4g27180; At5g27000; At5g27950; At5g65930; B1317D11.110; CHLREDRAFT_102475; CHLREDRAFT_105722; CHLREDRAFT_119255; F2P16.12; F7J7.210; GSVIVT00011633001; GSVIVT00012554001

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	minus-end kinesin complex	GO:0005872	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	spindle microtubule	GO:0005876	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule binding	GO:0008017	Molecular Function	-
Sma3	minus-end-directed microtubule motor activity	GO:0008569	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	anastral spindle assembly involved in male meiosis	GO:0009971	Biological Process	-
Sma3	spindle assembly	GO:0051225	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	FERM domain	IPR000299	-	-
Sma3	MyTH4 domain	IPR000857	-	-
Sma3	Bet v I domain	IPR000916	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	FERM/acyl-CoA-binding protein, 3-helical bundle	IPR014352	-	-
Sma3	FERM central domain	IPR019748	-	-
Sma3	Band 4.1 domain	IPR019749	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G27950.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr5:9984774-9987493 FORWARD LENGTH=625	50%
RefSeq	Arabidopsis thaliana	NP_198147.2	kinesin motor protein-like protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002304845.1	predicted protein [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 696 - 509

Fln protein: MEGTPDCPGIVPHMIQELFHQASLDRTVSFTFSFSMLELYMGHLRDLLTSQSTNLSIQMDAKGTVEIENLREVIMTNFSQARKLYSKGSRARSTAWTNANESSSRSHCLIRIAISCSGAPERYRDTSKLWMVDLGGSERLQKTQATGQTMEEGKAINMSLSALGDVISALQNKQAHIPYRNSKLTQILRDSIGEDSKTLMLVHISPKADDLSETICSLSFATRARGVHLGRELSYEVKVQTEANMVELMQKMRCLEDDCQSARNNIQTVEFLLREKKKHLAKSDPSLGYQETADSQASQETEMTYNIELGNVAEGSVGLPRYMNATACSRIRGKSVDAEFKTPGVMKKRMQLSNERKKSLSGNAKSMIFPEMDQSVCGSESYVSNDSVLTHSSLPNKKKMNRIYSKRCGIDEFLCFSERTPPKVGGISKNKIRTGIYSKQSTISESQCSSEGKTPMGKASEKYYKQYTIDQSQCLSECNTPKDSGLPEHEVIGAYSEEFTIAEYQFLSECNTPESKRVRSSIPRCKRVIAFQTSPNKTPNKDISSTPAVEKTELTLTKEVMYSGPINDKNEDDSNPSQNEQNCKQLPMPTLSKPISQSPMEENEMKELENEMKELCKQEIAIAVAATAAIPKGTATMEMETKAKTATISMTATKETTGFCFHMAKMVHILLSGACLGVGLLNLGLEDDFFFGLLL*

Protein Length: 697

Fln nts: CCCTAAACAAACTGCTAGATCTGAAAGGAAACATCCGTGTTTTTTGTCGAGTGAGGCCTTTCCTCTTTAGTGAGAAGCAGGCAATACCTGGGCCTCTTGCAGTTCCTGATCTAGACAAAGTGGTCATAAAATTAGCTGGAGGGAAAACTAAAGAATACAACTTTGACAAGGTTTTCCTTCCTGATGCTTCACAAGATGAAATCTTTACAGAAGTGGAGCCAATTATCAGATCAGCTTTGGATGGACACAATGTATGCATTTTTGCCTATGGACAGACAGGGACTGGCAAAACTTTTACT_-_ATGGAAGGCACGCCAGATTGTCCTGGGATTGTTCCCCATATGATACAAGAACTATTTCATCAGGCCTCTCTGGACAGGACTGTTAGCTTCACATTCTCATTTAGCATGCTAGAACTATACATGGGACACTTGAGGGATTTACTTACCTCTCAATCAACAAATCTTTCTATCCAAATGGATGCAAAGGGTACCGTTGAAATTGAGAACCTAAGGGAAGTGATCATGACCAATTTCAGCCAAGCAAGAAAATTGTATAGCAAAGGTAGCAGAGCTCGATCTACAGCTTGGACCAATGCCAATGAGTCATCTAGTAGATCACATTGTTTAATCAGGATTGCTATCAGTTGCTCGGGTGCTCCAGAAAGATACAGAGATACCAGCAAGCTTTGGATGGTAGATCTTGGTGGAAGTGAACGTTTGCAAAAGACACAGGCCACAGGTCAGACTATGGAGGAAGGGAAGGCGATAAATATGTCCCTCTCAGCTCTTGGTGATGTGATTAGTGCATTACAGAATAAGCAAGCTCACATTCCTTATAGGAACAGCAAACTTACGCAAATCCTAAGAGACTCAATAGGAGAAGACTCAAAAACGTTGATGCTTGTCCATATTAGTCCCAAGGCAGATGATTTAAGTGAGACGATTTGTTCTTTGAGTTTTGCAACTAGAGCAAGGGGGGTTCACCTTGGACGAGAACTATCTTATGAAGTCAAAGTTCAGACAGAAGCAAACATGGTTGAACTGATGCAGAAGATGAGATGCCTTGAAGATGACTGCCAAAGTGCAAGAAACAATATTCAAACCGTTGAGTTTCTTCTGAGAGAAAAGAAGAAACATCTTGCAAAGAGTGATCCATCCTTAGGGTACCAGGAAACAGCAGATAGTCAAGCTAGTCAAGAAACAGAGATGACATACAATATTGAATTAGGGAATGTAGCAGAAGGGTCCGTGGGCTTGCCCAGATATATGAATGCCACAGCCTGTAGTCGCATCCGAGGTAAGTCAGTGGATGCAGAATTCAAAACTCCAGGCGTAATGAAAAAGAGAATGCAATTGAGTAATGAAAGGAAAAAATCCTTATCAGGGAATGCCAAAAGTATGATTTTTCCCGAGATGGATCAATCAGTTTGTGGTTCAGAAAGCTATGTATCTAATGACAGTGTTCTTACGCATTCCTCACTGCCCAACAAAAAGAAAATGAATAGAATTTATTCTAAGAGGTGTGGTATTGATGAATTCCTATGCTTTTCAGAGAGAACTCCACCCAAGGTTGGTGGAATCTCCAAAAATAAGATTAGGACTGGAATTTATTCCAAGCAGAGTACCATTTCTGAATCGCAATGCTCTTCTGAGGGTAAGACACCCATGGGCAAGGCCAGTGAAAAATATTATAAGCAGTATACTATTGATCAATCCCAATGCCTTTCAGAGTGTAATACTCCTAAAGATAGTGGATTGCCCGAACATGAGGTGATTGGTGCATATTCTGAGGAGTTTACCATTGCCGAGTACCAGTTCTTGTCAGAGTGCAATACACCCGAGAGCAAACGAGTGCGTTCATCAATTCCACGCTGTAAAAGGGTGATTGCTTTCCAAACATCACCCAATAAAACACCGAACAAAGATATTTCATCTACTCCTGCTGTTGAGAAAACAGAACTGACGTTGACAAAGGAAGTTATGTACAGCGGGCCTATAAACGATAAGAATGAAGACGATTCAAATCCATCTCAAAATGAACAGAACTGCAAACAATTACCCATGCCAACATTATCAAAACCTATCTCACAATCCCCCATGGAAGAAAATGAGATGAAGGAACTAGAAAATGAGATGAAGGAACTATGTAAACAAGAAATAGCAATAGCAGTGGCAGCAACAGCAGCAATACCGAAAGGAACGGCAACGATGGAAATGGAAACAAAAGCTAAAACAGCAACAATATCAATGACAGCAACAAAAGAAACAACAGGATTCTGCTTTCATATGGCGAAGATGGTGCATATACTATTGTCCGGCGCTTGTTTAGGGGTGGGGTTACTGAACTTGGGACTCGAGGATGACTTTTTCTTTGGACTGCTGCTCTGAAGAAGCTCATACACGTGAATCGCAGTAATTTATACCTGGATCATTCATCCGTATCAAAATTAGGATCGTGTTCCCCTGTCTGGAATATTTTTTGGGTATAGTGGATTGTGTATAACCCAATACAGAGTCCCATCACATATAGAAGACTTATATTATACAAGGATATTAATTTATTGGAAGATGTCGCAAGCTTGGTGTGTGCCCTCAATAAACAGGTGGAAGCAAACGACTTGCTCCCGATAAATGCTCTCAGCCCGGGTTTTAAACCTCCGCAAATTGCATGTTGTGTGAGAGAAGGCTGGGATTTAGCAGGGTTTTGTATATTTTACACAGAAGTGGGTTGGGGTTTGAACTAGGTTTTGTATATTCTAATTTGACAGAACTGAGTTGGGATTTGAACTAGGTTTTGTATATATTGTGTAGATAATGATTTATGATGGGACACAGATACTGTATGATGTTACAATAGTAAATTATCCTTGTTCATGAACTGTACAAATTTATATTTATGTTGAAAGATATTTTTGTGTTGGATCT

Fln Alignment:

Contig13160___RTVSFTFSFSMLELYMGHLRDLLTSQSTNLSIQMDAKGTVEIENLREVIMTNFSQARKLYSKGSRARSTAWTNANESSSRSHCLIRIAISCSGAPERY---RDTSKLWMVDLGGSER-LQKTQATGQTMEEGKAINMSLSALGDVISALQNKQAHIPYRNSKLTQILRDSIGEDSKTLMLVHISPKADDLSETICSLSFATRARGV
D5ACB2_______________REQGFRLWLSFFEIYGGKLYDLLGDRR-KLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIKKHGEGKELKGGRTVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGL

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
462		83	16		0.994512
625	25			75	1.0
626	75	25			1.0
629		75		25	1.0
657		66		33	0.997452
879	16		83		0.994512
1067	71	28			1.0
1068	28		71		1.0
1069	71			28	1.0
1132	66	33			0.997452
1134		66		33	0.997452
1135	66			33	0.997452
1276	12	87			0.992554
2383	33		66		0.997452
2384		66		33	0.997452
2386		66	33		0.997452
2387			33	66	0.997452
2423	72		27		1.0
2440	10		90		0.90298
2441		10		90	0.90298
2444		90		10	0.90298
2730	33			66	0.997452
2835	57	42			1.0
2883		20		60	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain