SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13148

Length: 1842 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene13148 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase 2 [Oryza sativa Japonica Group]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Receptor serine-threonine protein kinase, putative	-	-	1.494e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	4.288e-17	-
Sma3		EC:2.7.11.3-	-	4.587e-09	-

Source	Gene names
Sma3	673I14.2; AT3G24550; AT4G22130; AT4g02010; AT4g02630; At1g07870; At1g20650; At1g26150; At1g52290; At1g68690; At1g76370; At2g20300; At2g28590; At3g20530; At4g02010; At4g02630; At4g13190; At4g22130; At5g02800; At5g18610; B1130E07.8; B1331F11.28; F14C21.40;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	protoderm histogenesis	GO:0010068	Biological Process	-
Sma3	cuticle development	GO:0042335	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-
Sma3	organ formation	GO:0048645	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G11020.1	Protein kinase superfamily protein chr5:3486439-3488983 REVERSE LENGTH=433	59%
RefSeq	Arabidopsis thaliana	NP_180094.5	protein kinase domain-containing protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002299270.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA69

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 508 - 587

Fln protein: MGSLEIEVERCSTVNQCDWYNKSFTLYQCHWHHPAEHTLDGVQYPLEIHLVHKADDGEIAVIGILYKSGAHDPFLDQQHPYSKRSP*SLLDMKFNISKF*SLWPLLLCSSF*GPSSSFSHIGLVHGCPRSRLCPVLPSSQPPALRKQSDIDDSDANNGMSLGPLLTRFSSFRTGKRKGCASAIEYSVLQAATNNFSSYNLLGQGGFGSVYRAQFPDDFCVAVKMLDENRKQADDEFQSEVELMSKIRHPNLVSLLGFCVHGKRRLLVYELMQNGSLEAHLHGPSHGSALTWHLRMKIALDTARGLEHLHDHCNSSIIHSDFKSANILLDASFNAKLSDFGLAVRAGGHMCSADAELLGTLGYLAPEYLSDGKLTEKSDVYAFGVVLLELITGRKPVDKSMPAGCQSLVTWAKPQLTDRSKLPTIVDPMMKETVHLKHLYQVAAVAVVCVQTEPDYRPLITDVVHSLMPLVPVELGGALKNAKALSDNETKSLVAANLSTKTTGKTEL*

Protein Length: 509

Fln nts: ATGGGCAGTCTGGAGATAGAAGTAGAAAGATGTAGTACGGTGAATCAATGCGATTGGTATAACAAAAGCTTTACACTGTATCAATGCCATTGGCACCACCCGGCGGAGCACACTCTTGATGGAGTGCAGTATCCGTTGGAAATCCATCTGGTGCACAAAGCGGACGACGGCGAGATTGCCGTGATTGGAATACTTTACAAGAGTGGCGCGCATGACCCATTCCTGGACCAGCAACATCCCTACAGCAAACGAAGCCCCTGAAGTCTACTAGACATGAAATTCAACATCTCAAAGTTCTGATCATTGTGGCCATTGCTCTTGTGCTCCTCATTTTAGGGGCCATCATCATCCTTTTCACATATTGGACTTGTACATGGGTGTCCTAGGAGTCGTTTATGTCCAGTTCTTCCATCATCTCAACCTCCAGCATTACGAAAACAGTCAGATATTGATGACTCAGATGCCAATAATGGAATGTCACTTGGCCCCTTGCTTACTCGTTTCAGCTCTTTCAGAACTGGTAAAAGGAAGGGATGCGCATCTGCTATAGAGTATTCTGTTTTACAAGCAGCTACAAATAATTTTAGTAGCTATAACCTCCTTGGGCAGGGAGGCTTTGGTTCTGTATACAGAGCTCAGTTCCCTGATGATTTTTGTGTTGCGGTCAAGATGCTAGATGAAAACAGAAAACAGGCAGACGATGAATTTCAGAGTGAAGTTGAACTAATGAGCAAAATCAGGCATCCAAACCTCGTGTCTTTGTTGGGTTTCTGTGTCCATGGGAAGAGAAGGCTGCTAGTATACGAGCTTATGCAAAACGGTTCTTTGGAAGCACACTTACACGGTCCATCTCATGGATCTGCACTTACATGGCATCTGCGTATGAAGATTGCTCTTGATACGGCCAGGGGTCTAGAGCATCTGCATGATCACTGCAATTCATCAATAATTCATAGTGATTTTAAATCAGCTAATATCCTTCTGGATGCAAGTTTCAATGCCAAACTTTCAGATTTTGGCCTAGCAGTAAGAGCTGGGGGACATATGTGCAGTGCAGATGCTGAGCTATTAGGAACCCTGGGATATCTAGCTCCAGAGTACCTTTCTGATGGGAAACTGACGGAGAAAAGTGATGTTTATGCATTTGGAGTTGTTCTATTGGAGTTGATTACTGGCAGAAAACCTGTTGACAAATCTATGCCAGCTGGTTGCCAATCTCTTGTTACATGGGCCAAGCCACAGTTGACAGATAGGTCAAAGCTTCCAACAATTGTGGATCCTATGATGAAAGAGACTGTGCATTTGAAACACCTATATCAAGTGGCAGCTGTTGCTGTTGTTTGTGTGCAAACAGAGCCTGATTATAGACCACTTATAACTGATGTTGTACATTCTCTTATGCCTCTTGTACCGGTAGAGCTTGGAGGGGCATTAAAGAACGCAAAAGCACTATCTGACAATGAGACGAAATCACTGGTTGCTGCTAATTTAAGTACCAAAACAACCGGGAAGACGGAACTATAA___GCAGATATTAGTGCCCATTGGGATGGGAATGTATATTTTTTCTTAATATTGTGTTTGTACGGTGACTTTATATTATATTAAGTGCTGCTTAAGTACTAGTACATTTATACCAAATTTTTCTTGGCAACTTTTAAGGTTAAGATGGAAGTTACTATTGATTGAAATTTTGTTTCGGTTGACGATTTGTCAACTGGAATTCAAGCAGCAATGTTTGTAGATTTTCTTTGTTGAAAAAGGAAAAGGAAATTCAAAATAGTGTATTAAATTTTCCTTTTTAAGGGAAATGCTTGCCATTCAGAAAATAAAACATTGAAGATC

Fln Alignment:

Contig13148___RSRLCPVLPSSQPPALRKQSDIDDSDANNGMSLGPLLTRFSSFRTGKRKGCASAIEYSVLQAATNNFSSYNLLGQGGFGSVYRAQFPDDFCVAVKMLDENRKQADDEFQSEVELMSKIRHPNLVSLLGFCVHGKRRLLVYELMQNGSLEAHLHGPSHGSALTWHLRMKIALDTARGLEHLHDHCNSSIIHSDFKSANILLDASFNAKLSDFGLAVRAGGHMCSADAELLGTLGYLAPEYLSDGKLTEKSDVYAFGVVLLELITGRKPVDKSMPAGCQSLVTWAKPQLTDRSKLPTIVDPMMKETVHLKHLYQXXXXXXXXVQTEPDYRPLITDVVHSLMPLVPVELGGALKNAKALSDNETKSLVAANLSTKTTGKTEL*ADI
D5AA69_______________RSRLCPVLPPSQPQALRKQSDNDDSDANNGMSIGPFLTRLSSFRTGKRKGCASAIEYSVLQAATNNFSSYNFLGKGGFGSVYRAQFHDDFCVAVKMLDENRKQADNEFQSEVELMSKIRHPNLVSLLGFCVHGKTRLLVYELMQNGSLEEHLHGPSHGAALTWHLRMKIALDTARGLEHLHEHCNSSIIHSDFKSANILLDASFNAKLSDFGLAVRAGGCICSTDVELLGTLGYLAPEYLFDGKLTEKSDVYAFGVVLLELITGRKPVDKSMPAGCQSLVTWAKPQLTDRSKLPTIVDPMIKETMHLKHLYQVAAVAVLCVQNEPDYRPLITDVAKSLMPLVPVELGGALKNAKALSATEMKPLVAANLSTKTTEKTELKAQI

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1203	83		16		0.994512
1242			87	12	0.992554
1267	12			87	0.992554
1268		12	87		0.992554
1270	87			12	0.992554
1289			14	85	0.993533
1312	33	66			1.0
1351		80		20	0.995493
1368	20			80	0.995493
1437			72	27	1.0
1461			66	8	1.0
1469	10			90	0.90298
1473		90		10	0.90298
1474	90		10		0.90298
1475	90			10	0.90298
1554	70			30	1.0
1574	44			55	1.0
1577	37		62		1.0
1592		40		60	1.0
1606	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain