SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13117

Length: 1297 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene13117

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Allene oxide synthase n=1 Tax=Cucumis melo RepID=Q8L5M5_CUCME	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Allene oxide synthase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydroperoxide dehydratase.	EC:4.2.1.92	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	alpha-Linolenic acid metabolism	00592	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	AOS; AOS1; AOS2; AOS4; At5g42650; CYP74; CYP74A; CYP74A1; CYP74A2; CYP74A4; CYP74A7; CYP74B7; CYP74C6v1-2; CYP74C7-1; CYP74C8; GSVIVT00014710001; GSVIVT00025918001; GSVIVT00036454001; GSVIVT00036455001; GSVIVT00036456001; GSVIVT00036457001; HPL; HPL1; HPL

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	plastoglobule	GO:0010287	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	allene oxide synthase activity	GO:0009978	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	hydroperoxide dehydratase activity	GO:0047987	Molecular Function	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G42650.1	AOS, CYP74A, DDE2 allene oxide synthase chr5:17097803-17099359 REVERSE LENGTH=518	48%
RefSeq	Arabidopsis thaliana	NP_199079.1	allene oxide synthase [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002302453.1	cytochrome P450 allene oxide synthase [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKD1

Fln msg: Distance to subject end: 116 aas, your sequence is shorter than subject: 357 - 475

Fln protein: MLASMASKASPVKEIPGSYGPPLLGALADRFEYFVTEGVDQFFKRRIDRYKSTVFKVNMPPGPPIVWDSRVIMLLDGKSFPVLYDLSKVEKKNVLTGTYMPSTAFTGGYRVAVYLDPSEENHSKLKRFCFEVLRSSRDRYFPEFSRAFDELSATVDKEMGSGGKASFGKPIEQLIFNFLCRSLTGADPVTQGLGTDGPSYVIKWLAPQLAPTVSSGVLPKIVDELTIRSIRLPFWPVKGYYEKLFKFLWTHAASALDKAEKEFGLKRAEACHDLLFNISFNAFGGMLIMLPSIVKHIARAGNQLQGDLAEEVRVAVRAQGSLNGRALESMALVRSTVYEVLRIDPPVPLQYARAKTD

Protein Length: 358

Fln nts: ACAGGGAAGGTCCTGCAAGATAAGGGCATCCAAATAGATGCAAATAGATGTTCAGATATAGAAACAAAACAAGCCAGAGGGACCCTTCGAAAATTGTGAAGGTAAAGCCCAAAACAGTCTCTCTAATATTTTCATAGGTTGTGTAACTCATCTATATCTACAACGATTTCATTCGACCTGGTGTGAGCTTTCTGAATTTTGTGCAAGCAAGAGGATAGGGTGCAG_-_ATGTTGGCGAGCATGGCTTCAAAGGCGAGTCCTGTGAAGGAGATCCCCGGAAGTTACGGTCCCCCACTGCTGGGCGCTCTTGCCGATCGATTCGAATATTTCGTGACAGAAGGAGTCGATCAGTTTTTTAAGCGCCGCATAGACAGATACAAGAGCACGGTGTTTAAGGTCAATATGCCGCCAGGTCCGCCCATCGTGTGGGACTCGCGAGTGATAATGCTGCTGGACGGCAAGAGTTTCCCCGTGCTCTATGATCTGAGCAAGGTAGAGAAGAAGAATGTGCTCACTGGCACTTACATGCCCAGCACTGCTTTCACCGGAGGTTATCGGGTTGCCGTATACCTGGACCCCTCGGAGGAGAATCACAGCAAGCTCAAGAGATTTTGTTTCGAGGTACTCAGAAGCAGTCGAGACAGATATTTCCCGGAGTTTTCCCGAGCGTTCGACGAGCTCAGCGCCACTGTCGACAAAGAAATGGGGAGCGGCGGGAAGGCGTCTTTCGGCAAACCGATTGAGCAATTGATATTCAATTTCCTCTGCCGGTCGTTAACGGGAGCGGACCCAGTAACTCAGGGCCTCGGAACCGACGGCCCTTCGTATGTTATCAAGTGGCTTGCGCCGCAGCTCGCTCCTACAGTGAGCTCGGGCGTCCTTCCAAAGATCGTGGACGAGCTCACCATCCGTTCAATACGTCTGCCCTTCTGGCCCGTCAAGGGCTACTACGAGAAGCTCTTTAAATTTCTGTGGACACATGCGGCTTCGGCCCTGGACAAGGCCGAGAAAGAGTTCGGACTGAAAAGAGCGGAGGCTTGCCATGATCTCCTGTTTAACATCTCTTTCAACGCTTTTGGGGGAATGCTAATTATGCTCCCCAGTATCGTCAAACATATTGCCCGCGCGGGCAACCAACTGCAGGGAGATCTGGCAGAAGAGGTTCGCGTAGCCGTTAGGGCACAGGGGAGCCTCAACGGGAGGGCTCTGGAGAGCATGGCGCTGGTCCGGTCGACTGTGTACGAGGTGCTGAGGATTGACCCGCCTGTGCCTTTGCAGTACGCGAGAGCCAAGACGGATT

Fln Alignment:

Contig13117___VQMLASMASKASPVKEIPGSYGPPLLGALADRFEYFVTEGVDQFFKRRIDRYKSTVFKVNMPPGPPIVWDSRVIMLLDGKSFPVLYDLSKVEKKNVLTGTYMPSTAFTGGYRVAVYLDPSEENHSKLKRFCFEVLRSSRDRYFPEFSRAFDELSATVDKEMGSGGKASFGKPIEQLIFNFLCRSLTGADPVTQGLGTDGPSYVIKWLAPQLAPTVSSGVLPKIVDELTIRSIRLPFWPVKGYYEKLFKFLWTHAASALDKAEKEFGLKRAEACHDLLFNISFNAFGGMLIMLPSIVKHIARAGNQLQGDLAEEVRVAVRAQGSLNGRALESMALVRSTVYEVLRIDPPVPLQYARAKTD
B8LKD1_______________MKVLASMASTAGPVKEIPGSYGPPLLGAIADRFEYFVTEGVDKFFKKRIDKYKSTVLKVNMPPGPLIVSDSRVIMLLDGKSFPVLYDLSKVEKKNVLTGTYMPSTSFTGGYRVAVYLDPSEENHSKLKRFCFEVLGSSRDRYFPEFARAFDELSAAVDKEMASRGKASFGEQIEQLIFNFLCRSLTGADPVTQGLGTDGPSYVIKWLAPQLAPTLSSGFLPKIVDELTIHSIRLPFWPVSGYYDKLFNFLWTHAAPALDVAEKEFGLKRAEACHDLLFNISFNAFGGMSILFPSIVKYIGNAGNQLQRDLAEEIRGAVRAQGNLNGRALESMALVRSTVYEVLRIDPPVPLQYARAKTD

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1163	20		80		0.995493
1266	33	66			0.997452
1267		66		33	0.997452
1268			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain