SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13094

Length: 2306 nt

UniGene Fasta

>sp_v3.0_unigene13094
CGTCGTGACCGTCGTGACCTTCGCTGTCACACAGTCGCCACCTTGTCCCAAATTTTAAAGTCAGTAGGAAGCTGCCCAGGCCATCATCCTTGTACTATGTTGTGTCGTATTAACAGAACCAGCATCTTTCGATACTGTGAAACCCCAGTTGCAAGACCTTCTGTTCATCCCATCTGCTAATTCCCTTATCTGCGCGCAACAATTTTTGTTCTTTTTTCCTCGTATATTGTTCCAGAATTCAACAAAGCAATGGATCCCCAGATCGATCCCCGCAGCGGATACTGCAGCTCCAACCAGACGTACTACAGCAAGCGAAAACCAGTTAATTTTCCCCAAGACGAATACCTGGATCTTCCCAGCTACGTTTCCTCGCTTCACCACAATGGCCAAATAGCCCTCATCGACTCTGCCACTGGGGAAACCATCACCTTCCCCCAACTATGGCAGAGCGTGAAGTCACTTGCCGCTGGTTTAGCCGGCCTTGGAATCAGAAAATCCGATGTTGTCCTCCTCCTCTCGCCTAATTCAATCCATTTCCCCATAATCTGCATGGCTATCTTGTCCATTGGAGCCATCGTTACGACCACCAATCCGCTAAATACCGCGGCTGAGATAGCGAAGCAATCCAGAGACTCAGCAGCCGTGTTGGCCTTCGTCACCCCATCTTTGGCGGTCAAATTGGCAGCCACCAAATTGCCCATTGTGCTCATCTCATCTTCTTCATCTGAATTAGCCCCCCATAATGGCCAAAATTACATCTCTACTCTACACAAGCTCCTGACTTCGAATCCTGCACATGCCCCTGTTGTGAAAATCCGCCAAGACGATACTGCCACGTTGCTCTATTCCTCTGGGACTACTGGAATGAGCAAAGGGGTTATTTCCACTCACAGAAATCTGATTGCTATGGTTTGCATTTTGCTGAAGCGCTTGGGATTCAGTTCTGACAATAGTACCCGGAATCAGACTGATTCATTCCTGTGTACGGTGCCCATGTTTCATATATATGGGCTTGCGGCTTTTGCTTGTGGGTTGCTTGGATCCGGATCCACCATTGTTGTGCTGTCTAAGTTTGATCTCGTAGAGATGCTTGGTTTGATTCAGAAGTACAGAGTCACCTATTTGCCTCTTGTGCCTCCCATCCTGTTGGCTATGAACAAAGTCGATATTGCAAGGAAATATAATTTGAGTTCTTTGCACACTGTCATATGTGGTGGGGCTCCCCTGAGCAAGGAGTCTACAGAGGAGTTTATTTCTCGCTTCCCTGGAGTCACAATAACACAAGGCTACGGGCTAACAGAAACAATGGGAGTAGGAGCATCTACGGACAGTCAAGAAGAAAGTAGACACTATGGAACGGCTGGCTTGTTGTCTCCAAATACTGAAGCAAAAATAATTGATCCTATTTCAGGAACTCCTCTGCCCCCAAACCAACAAGGAGAACTGTGGCTTCGTGGTACATATGTCATGAAAGGTTATTTCAGCAATCCGGAAGCTACTGCTTCAACTCTGAATTCGGATGGTTGGCTACGAACAGGTGATCTCTGTTACGTTGATGATGAGGGCTACATCTTTGTAGTGGACAGATTGAAAGAGTTGATCAAATATAAGGGTTACCAGGTTGCTCCTGCTGAATTAGAAGCACTTCTACATTCTCACCCTGAGATTATGGATGTTGCAGTAATACCGTTTCCAGACAAAGAAGCTGGCCAGGTTCCAATGGCATATATTGTGAGGAAACCCGGAGGCACACTATCTGAAAGCAGTGTAATCAACTTTGTAGCTCAACAGGTGGCACCATACAAGAAGGTTCGTCATGTGGCTTTTGTGAGTGAGATTCCAAAAAATGCAGCAGGAAAGATATTGAGAAAGGACTTGATTAAACTGGCCACCTCCAAACTCTGATGCATTTGTGGTAGTATAGGTCTCATTTGTTTGTTAAAGAACAAAATGCATCACAGCCTATGGTTGAGAAGTCACACAGAATAGGAAACAACCATTATCCGCAACATCAGAGTTATCAAAGCTCTTACAAATGGATCAGAATTCCTGCTAGTAAAAGCCAGTTTTTAGGGTTTAGGAATATGCTCTGGCTTTAAGTACAACAGTAGCAATTTTTTGGTGAGTCAGGACTCGGTACCTAAGCACCACATCCATTTTTCTTTGAGATTAGTTGCTATTTTTATTTTTGTAAGGCTACTTTGTAGGCTGTCCTAGTATAAAGCATACTTATTATACACAATGTTACTGTTTCTCAGCCTTCTCCTTTTCAGAAAGAAAGAAATAAATGGTTGCTTTCTCTGTCA

Ace file of the UniGene sp_v3.0_unigene13094

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9R8J7_RICCO	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Acyl:coa ligase	-	-	5.749e-36	-

Source	ECs	Term	Type	e value	Identity
Sma3	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing).	EC:1.13.12.7	-	4.952e-25	-
Sma3	Ligases, Forming carbon-sulfur bonds, Acid--thiol ligases.	EC:6.2.1.-	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Geraniol degradation	00281		0.0	%
Sma3	Tyrosine metabolism	00350		0.0	%
Sma3	Benzoate degradation	00362		0.0	%
Sma3	Fluorobenzoate degradation	00364		0.0	%
Sma3	alpha-Linolenic acid metabolism	00592		0.0	%
Sma3	Aminobenzoate degradation	00627		0.0	%
Sma3	Propanoate metabolism	00640		0.0	%
Sma3	Ethylbenzene degradation	00642		0.0	%
Sma3	Carbon fixation pathways in prokaryotes	00720		0.0	%
Sma3	Limonene and pinene degradation	00903		0.0	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960		0.0	%
Sma3	Biosynthesis of plant hormones	01070		0.0	%
Sma3	Metabolic pathways	01100		0.0	%
Sma3	Biosynthesis of secondary metabolites	01110		0.0	%
Sma3	4-coumarate--CoA ligase.	EC:6.2.1.12	-	5.14136e-42	-

Source	KEGGs	Term	e value	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	5.14136e-42	%
Sma3	Phenylalanine metabolism	00360	5.14136e-42	%
Sma3	Phenylpropanoid biosynthesis	00940	5.14136e-42	%
Sma3	Biosynthesis of phenylpropanoids	01061	5.14136e-42	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	5.14136e-42	%
Sma3	Metabolic pathways	01100	5.14136e-42	%
Sma3	Biosynthesis of secondary metabolites	01110	5.14136e-42	%

Source	Gene names
Sma3	4CL; 4CL-1; 4CL-2; 4CL1; 4CL2; 4CL3; 4CL4; 4CLL1; 4CLL2; 4CLL3; 4CLL4; 4CLL5; 4CLL6; 4CLL7; 4CLL8; 4CLL9; ABG-1; ACLL13; ACLL15; ACLL16; ACLL18\|Ptr4CL13; ACLL20; ACLL21; At1g20480; At1g20490; At1g20500; At1g20510; At1g65060; At3g21230; At3g21240; At4g0516

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	fatty-acyl-CoA synthase activity	GO:0004321	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	phenylpropanoid metabolic process	GO:0009698	Biological Process	-
Sma3	phenylpropanoid biosynthetic process	GO:0009699	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G20510.1	OPCL1 OPC-8:0 CoA ligase1 chr1:7103645-7105856 REVERSE LENGTH=546	62%
RefSeq	Arabidopsis thaliana	NP_564115.1	OPC-8:0 CoA ligase1 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002307770.1	acyl:coa ligase [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABX8

Fln msg: your sequence is longer than subject: 552 - 373

Fln protein: MDPQIDPRSGYCSSNQTYYSKRKPVNFPQDEYLDLPSYVSSLHHNGQIALIDSATGETITFPQLWQSVKSLAAGLAGLGIRKSDVVLLLSPNSIHFPIICMAILSIGAIVTTTNPLNTAAEIAKQSRDSAAVLAFVTPSLAVKLAATKLPIVLISSSSSELAPHNGQNYISTLHKLLTSNPAHAPVVKIRQDDTATLLYSSGTTGMSKGVISTHRNLIAMVCILLKRLGFSSDNSTRNQTDSFLCTVPMFHIYGLAAFACGLLGSGSTIVVLSKFDLVEMLGLIQKYRVTYLPLVPPILLAMNKVDIARKYNLSSLHTVICGGAPLSKESTEEFISRFPGVTITQGYGLTETMGVGASTDSQEESRHYGTAGLLSPNTEAKIIDPISGTPLPPNQQGELWLRGTYVMKGYFSNPEATASTLNSDGWLRTGDLCYVDDEGYIFVVDRLKELIKYKGYQVAPAELEALLHSHPEIMDVAVIPFPDKEAGQVPMAYIVRKPGGTLSESSVINFVAQQVAPYKKVRHVAFVSEIPKNAAGKILRKDLIKLATSKL*

Protein Length: 553

Fln nts: CGTCGTGACCGTCGTGACCTTCGCTGTCACACAGTCGCCACCTTGTCCCAAATTTTAAAGTCAGTAGGAAGCTGCCCAGGCCATCATCCTTGTACTATGTTGTGTCGTATTAACAGAACCAGCATCTTTCGATACTGTGAAACCCCAGTTGCAAGACCTTCTGTTCATCCCATCTGCTAATTCCCTTATCTGCGCGCAACAATTTTTGTTCTTTTTTCCTCGTATATTGTTCCAGAATTCAACAAAGCA_-_ATGGATCCCCAGATCGATCCCCGCAGCGGATACTGCAGCTCCAACCAGACGTACTACAGCAAGCGAAAACCAGTTAATTTTCCCCAAGACGAATACCTGGATCTTCCCAGCTACGTTTCCTCGCTTCACCACAATGGCCAAATAGCCCTCATCGACTCTGCCACTGGGGAAACCATCACCTTCCCCCAACTATGGCAGAGCGTGAAGTCACTTGCCGCTGGTTTAGCCGGCCTTGGAATCAGAAAATCCGATGTTGTCCTCCTCCTCTCGCCTAATTCAATCCATTTCCCCATAATCTGCATGGCTATCTTGTCCATTGGAGCCATCGTTACGACCACCAATCCGCTAAATACCGCGGCTGAGATAGCGAAGCAATCCAGAGACTCAGCAGCCGTGTTGGCCTTCGTCACCCCATCTTTGGCGGTCAAATTGGCAGCCACCAAATTGCCCATTGTGCTCATCTCATCTTCTTCATCTGAATTAGCCCCCCATAATGGCCAAAATTACATCTCTACTCTACACAAGCTCCTGACTTCGAATCCTGCACATGCCCCTGTTGTGAAAATCCGCCAAGACGATACTGCCACGTTGCTCTATTCCTCTGGGACTACTGGAATGAGCAAAGGGGTTATTTCCACTCACAGAAATCTGATTGCTATGGTTTGCATTTTGCTGAAGCGCTTGGGATTCAGTTCTGACAATAGTACCCGGAATCAGACTGATTCATTCCTGTGTACGGTGCCCATGTTTCATATATATGGGCTTGCGGCTTTTGCTTGTGGGTTGCTTGGATCCGGATCCACCATTGTTGTGCTGTCTAAGTTTGATCTCGTAGAGATGCTTGGTTTGATTCAGAAGTACAGAGTCACCTATTTGCCTCTTGTGCCTCCCATCCTGTTGGCTATGAACAAAGTCGATATTGCAAGGAAATATAATTTGAGTTCTTTGCACACTGTCATATGTGGTGGGGCTCCCCTGAGCAAGGAGTCTACAGAGGAGTTTATTTCTCGCTTCCCTGGAGTCACAATAACACAAGGCTACGGGCTAACAGAAACAATGGGAGTAGGAGCATCTACGGACAGTCAAGAAGAAAGTAGACACTATGGAACGGCTGGCTTGTTGTCTCCAAATACTGAAGCAAAAATAATTGATCCTATTTCAGGAACTCCTCTGCCCCCAAACCAACAAGGAGAACTGTGGCTTCGTGGTACATATGTCATGAAAGGTTATTTCAGCAATCCGGAAGCTACTGCTTCAACTCTGAATTCGGATGGTTGGCTACGAACAGGTGATCTCTGTTACGTTGATGATGAGGGCTACATCTTTGTAGTGGACAGATTGAAAGAGTTGATCAAATATAAGGGTTACCAGGTTGCTCCTGCTGAATTAGAAGCACTTCTACATTCTCACCCTGAGATTATGGATGTTGCAGTAATACCGTTTCCAGACAAAGAAGCTGGCCAGGTTCCAATGGCATATATTGTGAGGAAACCCGGAGGCACACTATCTGAAAGCAGTGTAATCAACTTTGTAGCTCAACAGGTGGCACCATACAAGAAGGTTCGTCATGTGGCTTTTGTGAGTGAGATTCCAAAAAATGCAGCAGGAAAGATATTGAGAAAGGACTTGATTAAACTGGCCACCTCCAAACTCTGA___TGCATTTGTGGTAGTATAGGTCTCATTTGTTTGTTAAAGAACAAAATGCATCACAGCCTATGGTTGAGAAGTCACACAGAATAGGAAACAACCATTATCCGCAACATCAGAGTTATCAAAGCTCTTACAAATGGATCAGAATTCCTGCTAGTAAAAGCCAGTTTTTAGGGTTTAGGAATATGCTCTGGCTTTAAGTACAACAGTAGCAATTTTTTGGTGAGTCAGGACTCGGTACCTAAGCACCACATCCATTTTTCTTTGAGATTAGTTGCTATTTTTATTTTTGTAAGGCTACTTTGTAGGCTGTCCTAGTATAAAGCATACTTATTATACACAATGTTACTGTTTCTCAGCCTTCTCCTTTTCAGAAAGAAAGAAATAAATGGTTGCTTTCTCTGTCA

Fln Alignment:

Contig13094___LTSNPAHAPVVKIRQDDTATLLYSSGTTGMSKGVISTHRNLIAMVCILLKRLGFSSDNSTRNQTDSFLCTVPMFHIYGLAAFACGLLGSGSTIVVLSKFDLVEMLGLIQKYRVTYLPLVPPILLAMNKVDIARKYNLSSLHTVICGGAPLSKESTEEFISRFPGVTITQGYGLTETMGVGASTDSQEESRHYGTAGLLSPNTEAKIIDPISGTPLPPNQQGELWLRGTYVMKGYFSNPEATASTLNSDGWLRTGDLCYVDDEGYIFVVDRLKELIKYKGYQVAPAELEALLHSHPEIMDVAVIPFPDKEAGQVPMAYIVRKPGGTLSESSVINFVAQQVAPYKKVRHVAFVSEIPKNAAGKILRKDLIKLATSKL
D5ABX8_______________MASNPADAPSVKIRQDDTATLLYSSGTTGTSKGVISTHRNLISVLCIFLSRLRL-------NREYLYLCTVPMFHVYGLSAFACGLLGSGSTIVVLSKFDVMEMLAAVEKYRVTYLPIVPPILLALTKTDIARKYDLRSLHTVICGGAPLSKESAEEFVARFPSVSLLQGYGLTETTGRGASTENEEESRHYGSVGMLTPNIEAKIVDPDSITPLPPNKKGELWLRGPVVMKGYFNNPEATASALDKDGWLRTGDLCYIDDNGYLFVVDRLKELIKYKGYQVAPAELEALLLSHPEIAEAAVIPFEDREAGQVPMAYIVRKPGSTLYETNVTDFVAQQVAPYKKVRRVAFVSEIPKTAAGKTLRKDLIKLATSKL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
40		66		33	1.0
49	16	83			0.994512
103		10		90	0.90298
112	90		10		0.90298
113	90		10		0.90298
115	90			10	0.90298
117	90			10	0.90298
118	90	10			0.90298
119	10	90			0.90298
121	90			10	0.90298
122		10	90		0.90298
123	10	90			0.90298
218		85		14	0.999981
524	66			33	1.0
526		33		66	1.0
527			33	66	1.0
2156		83		16	0.994512
2182		20		80	0.995493
2306	20	20		60	0.99255
2307	16	83			0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
2272	2284	AGAA AGAA AGAA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain