SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13059

Length: 407 nt

UniGene Fasta

>sp_v3.0_unigene13059
TCTCTTCATTGGCACTGAACCTCATTCAGGCCGCTTGATCGTGTTGTCTTCAGTAGATGGCAGTCCTGGTGCACGAGCTGACATACATCCAGGGGATGAACTAGTAGAAATTGATGGTGAACCCCTTACTGGAAAGAGTGGAGAGGAAGCAGCACAGAAGCTTAGGGGGCCTGTTGGCACTTCTGTTACAATTAAGCTTCGGAATGGAGGGTATTCAATGGAAGAACCGCAAACTAGAGAGACTGCTGCAACAGACATGGAAAATGTCATCATTGCATTGGAGGATCAAGATGTTCATTCTTACATTTTGGACTTACGCAATAATCCTGGAGGGTTAGTTAAGGCTGGACTTGACGTCGCACAGATATGGTTGGATGGAAATGAAACTCTTGTTAACACCATACATT

Ace file of the UniGene sp_v3.0_unigene13059

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	carboxyl terminal protease-like protein [Arabidopsis thaliana]	-	-	5.0e-26	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%

Source	Gene names
Sma3	GSVIVT00025542001; GSVIVT00025543001; Os06g0318600; OsI_22742; OsJ_21145; P0468A12.32; P0592B08.6; PHYPADRAFT_139259; POPTRDRAFT_652765; RCOM_0091120;

Source	GOs	Term	Type	Identity
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	serine-type peptidase activity	GO:0008236	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PDZ domain	IPR001478	-	-
Sma3	Peptidase S41A, C-terminal peptidase	IPR004447	-	-
Sma3	Interphotoreceptor retinol-binding	IPR005151	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57680.1	Peptidase S41 family protein chr3:21381054-21383629 FORWARD LENGTH=519	9.94922e-44	50%
RefSeq	Arabidopsis thaliana	NP_191327.4	Peptidase S41 family protein [Arabidopsis thaliana]	2.00386e-43	50%
RefSeq	Populus trichocarpa	XP_002308051.1	predicted protein [Populus trichocarpa]	3.0e-21	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQI3

Fln msg: Distance to subject end: 153 aas, your sequence is shorter than subject: 135 - 377

Fln protein: LFIGTEPHSGRLIVLSSVDGSPGARADIHPGDELVEIDGEPLTGKSGEEAAQKLRGPVGTSVTIKLRNGGYSMEEPQTRETAATDMENVIIALEDQDVHSYILDLRNNPGGLVKAGLDVAQIWLDGNETLVNTIH

Protein Length: 136

Fln nts: TCTCTTCATTGGCACTGAACCTCATTCAGGCCGCTTGATCGTGTTGTCTTCAGTAGATGGCAGTCCTGGTGCACGAGCTGACATACATCCAGGGGATGAACTAGTAGAAATTGATGGTGAACCCCTTACTGGAAAGAGTGGAGAGGAAGCAGCACAGAAGCTTAGGGGGCCTGTTGGCACTTCTGTTACAATTAAGCTTCGGAATGGAGGGTATTCAATGGAAGAACCGCAAACTAGAGAGACTGCTGCAACAGACATGGAAAATGTCATCATTGCATTGGAGGATCAAGATGTTCATTCTTACATTTTGGACTTACGCAATAATCCTGGAGGGTTAGTTAAGGCTGGACTTGACGTCGCACAGATATGGTTGGATGGAAATGAAACTCTTGTTAACACCATACATT

Fln Alignment:

Contig13059___LFIGTEPHSGRLIVLSSVDGSPGARADIHPGDELVEIDGEPLTGKSGEEAAQKLRGPVGTSVTIKLRNGGYSMEEPQTRE----------------------------------------TAATDMENVIIALEDQDVHSYILDLRNNPGGLVKAGLDVAQIWLDGNETLVNTI
A9NQI3_______________LFIGTEPYSGRLIVLSSVEGSPGARAGIHTGDELVEIDGEPLTGKSGEEAAQKLRGRVGTSVTIKLRNGGDSVEDPQTREVNLSRETILLSPVSSSIIPHKTKDGQLMKTGYVRLSAFSQTAAIDMENVIIALEDQDVHSYILDLRNNPGGLVKAGLDVAQIWLDGNETLVNTI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
230	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain