SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13046

Length: 2231 nt

UniGene Fasta

>sp_v3.0_unigene13046
CCATTGTGACCTTGGTCGCATGCGACCGGGATCGTAAATTGTAATGAAGAGCAAGCCCGCTGTAAGTGATCCAGGAATCAGCGAGCTGAGTGGGTGAGCGGGCGGGGCGAGGGCAGAGAAAGAGGCGGGCAGTCGTGATCAGGTCACGGCTACGGTTAAAATTTCTCTTTCGATCGTTCATCACTGATTCTTTTCTTTCCGAGCAGGCGAGCGTGCGAAGGAAAAGGAGAAAGCAGAGATGGATTGATCGGGCCCAATCTACGCCCCTCTGCACGATGCAGGTGGCGTAGGACCTTCTTCTAAGCAAAGCAACCGAATGCACATCATTTTATACACAATCTCTTCCGAGTTTGCAGATTCTGAACTTGCATTCAGGGTTCCTCTGCTCCCAATAGAGTATTTTCGAGCATTTTCAATCTTCCTTAATGGCGTCCAAGTCCAGTGCAAAGTACAGGAAGACGTCGCCATTGGTTCCCAAGTCTCCGACGTCGCCAGCTTCTTCAAATTCGTCTTCGCATGCCTCCAGCTTCGGCTTCGGCTCCGCGTCCAGGTCTACGGGACGGAGCTTGCCTCCCACTCCCGGCATTGGACGGAACTTGTCGCCTAGCCCGTTTGCTCAGCCCAGGCCACAGTATGGATATCCGGAGGTTCTCGCGACCGACAGGACGGATTACATCAAAGCTAAGGAGAGTGTTACCGTCACTGTTAGACTTCGGCCCCTCAGTGCAAGAGAAATTCAGAAGGGAGATGAAATGGCTTGGTATGCAGATGGGGACACTACTGTCCGGAATGAATACAATCCATTGACGGCTTATATATTCGATAGAGTTTTTGGCCCAGCAACTACCACACGGCATGTATATGATGTAGCTGCTCAGCATGTTGTTAGTGGTGCAATGGAGGGTGTAAATGGCACAGTGTTTGCGTATGGTGTAACAAGTAGTGGAAAGACCCATACAATGCATGGAGATCAAAAGTCTCCTGGAATAATACCTCTGGCAGTGAAGGATGTGTTTAGTATTATACAGGAGACACCAGACCGAGAGTTCCTTCTTCGTGTATCATATTTAGAAATTTACAATGAGGTTATTAATGACTTGTTAGACCCTGCAGGGCAAAACCTAAGAATAAGGGAAGATGCTCAGGGAACATTTGTTGAGGGTATAAAAGAAGAGGTTGTTTTGTCACCAGCTCATGCATTGTCACTGATAGCAGCTGGAGAAGAGCACAGACATGTGGGGTCCAATAATTTTAACTTGCTGAGCAGTCGTAGTCATACAATATTTACACTGACAGTAGAAAGCAGTCCCCATGGAGAAAATAAAGGGGAGGAAGATGTCACCCTATCTCAGCTGAATCTCATTGACCTTGCAGGCTCTGAAAGCTCTAAAACAGAGACCACTGGGTTGCGAAGGAAGGAAGGTTCTTATATCAACAAAAGTCTGTTGACTCTTGGGACTGTTATTGCAAAGTTGACAGATGGGAAGGCAACACATGTACCTTACAGGGATTCAAAACTTACTCGTCTATTGCAATCTTCTTTGAGTGGCCATGGGCGTGTTTCACTTATTTGCACTGTTACTCCTGCATCAAGCAGTACTGAGGAAACACATAACACATTGAAATTTGCGCATCGAACAAAGCATGTTGAGATTCAAGCATCTCAAAACAAGATTATAGATGAGAAATCTCTCATTAAGAAGTACCAGAAAGAGATCCTCAAGTTGAAGCAGGAATTAGACCAGCTAAAGAGAGGTATAACGGAACAGCCCTATCTGGTGGCATCTGATCAAGATCTTGTCTCACTAAAACAACAGCTGAAAGCTGGCCAAGTTAAGCTGCAGTCACGGTTGGAAGAAGAGGAACAAGAAAAGGCAGCTTTAATGGGAAGAATTCAGAGGCTGACAAAACTCATTTTAGTATCTACAAAGAATACCATCCCCTCAAACATTCCAGAAAGATCTGGTCATCGACGAAGACATTCTTTTGGAGAAGAGGAGTTAGCATACCTACCAAATAGGAGACGCGACTTCATGATTGAGGAGGATGATAGTCATGATTCAGAATTTTCTACAGAAGGAAAGGGCGAGAACAACATAGAGGATTCATTCAAGGAGGAGAAGAAGAACAAAAAACATGGCATGCTCAATTGGTTCAAACTACGGAAGCGAGAGAATGGTGGAACAACTACAAATATTGATAATGAAAGCTCTCCAACTTCATCATACATT

Ace file of the UniGene sp_v3.0_unigene13046

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinesin (centromere protein) like heavy chain-like protein [Arabidopsis thaliana]	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Sma3	Kinesin heavy chain, putative	-	-	8.729e-14	-

Source	Gene names
Sma3	AT4g39050; At1g18370; At1g21730; At1g59540; At2g21300; At2g21380; At3g43210; At4g39050; AtNACK1; AtNACK2; CHLREDRAFT_114085; CHLREDRAFT_126121; CHLREDRAFT_151003; CHLREDRAFT_99147; F14P13.22; F19H22.150; F24M12.190; F7K15_60; F8K7.17; FLA10; FLA8; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	male meiosis cytokinesis	GO:0007112	Biological Process	-
Sma3	radial microtubular system formation	GO:0010245	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G12020.2	-	70%
RefSeq	Arabidopsis thaliana	NP_187809.3	kinesin motor protein-like protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002300974.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: Distance to subject end: 89 aas, your sequence is longer than subject: 602 - 509

Fln protein: MASKSSAKYRKTSPLVPKSPTSPASSNSSSHASSFGFGSASRSTGRSLPPTPGIGRNLSPSPFAQPRPQYGYPEVLATDRTDYIKAKESVTVTVRLRPLSAREIQKGDEMAWYADGDTTVRNEYNPLTAYIFDRVFGPATTTRHVYDVAAQHVVSGAMEGVNGTVFAYGVTSSGKTHTMHGDQKSPGIIPLAVKDVFSIIQETPDREFLLRVSYLEIYNEVINDLLDPAGQNLRIREDAQGTFVEGIKEEVVLSPAHALSLIAAGEEHRHVGSNNFNLLSSRSHTIFTLTVESSPHGENKGEEDVTLSQLNLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVIAKLTDGKATHVPYRDSKLTRLLQSSLSGHGRVSLICTVTPASSSTEETHNTLKFAHRTKHVEIQASQNKIIDEKSLIKKYQKEILKLKQELDQLKRGITEQPYLVASDQDLVSLKQQLKAGQVKLQSRLEEEEQEKAALMGRIQRLTKLILVSTKNTIPSNIPERSGHRRRHSFGEEELAYLPNRRRDFMIEEDDSHDSEFSTEGKGENNIEDSFKEEKKNKKHGMLNWFKLRKRENGGTTTNIDNESSPTSSYI

Protein Length: 603

Fln nts: CCATTGTGACCTTGGTCGCATGCGACCGGGATCGTAAATTGTAATGAAGAGCAAGCCCGCTGTAAGTGATCCAGGAATCAGCGAGCTGAGTGGGTGAGCGGGCGGGGCGAGGGCAGAGAAAGAGGCGGGCAGTCGTGATCAGGTCACGGCTACGGTTAAAATTTCTCTTTCGATCGTTCATCACTGATTCTTTTCTTTCCGAGCAGGCGAGCGTGCGAAGGAAAAGGAGAAAGCAGAGATGGATTGATCGGGCCCAATCTACGCCCCTCTGCACGATGCAGGTGGCGTAGGACCTTCTTCTAAGCAAAGCAACCGAATGCACATCATTTTATACACAATCTCTTCCGAGTTTGCAGATTCTGAACTTGCATTCAGGGTTCCTCTGCTCCCAATAGAGTATTTTCGAGCATTTTCAATCTTCCTTA_-_ATGGCGTCCAAGTCCAGTGCAAAGTACAGGAAGACGTCGCCATTGGTTCCCAAGTCTCCGACGTCGCCAGCTTCTTCAAATTCGTCTTCGCATGCCTCCAGCTTCGGCTTCGGCTCCGCGTCCAGGTCTACGGGACGGAGCTTGCCTCCCACTCCCGGCATTGGACGGAACTTGTCGCCTAGCCCGTTTGCTCAGCCCAGGCCACAGTATGGATATCCGGAGGTTCTCGCGACCGACAGGACGGATTACATCAAAGCTAAGGAGAGTGTTACCGTCACTGTTAGACTTCGGCCCCTCAGTGCAAGAGAAATTCAGAAGGGAGATGAAATGGCTTGGTATGCAGATGGGGACACTACTGTCCGGAATGAATACAATCCATTGACGGCTTATATATTCGATAGAGTTTTTGGCCCAGCAACTACCACACGGCATGTATATGATGTAGCTGCTCAGCATGTTGTTAGTGGTGCAATGGAGGGTGTAAATGGCACAGTGTTTGCGTATGGTGTAACAAGTAGTGGAAAGACCCATACAATGCATGGAGATCAAAAGTCTCCTGGAATAATACCTCTGGCAGTGAAGGATGTGTTTAGTATTATACAGGAGACACCAGACCGAGAGTTCCTTCTTCGTGTATCATATTTAGAAATTTACAATGAGGTTATTAATGACTTGTTAGACCCTGCAGGGCAAAACCTAAGAATAAGGGAAGATGCTCAGGGAACATTTGTTGAGGGTATAAAAGAAGAGGTTGTTTTGTCACCAGCTCATGCATTGTCACTGATAGCAGCTGGAGAAGAGCACAGACATGTGGGGTCCAATAATTTTAACTTGCTGAGCAGTCGTAGTCATACAATATTTACACTGACAGTAGAAAGCAGTCCCCATGGAGAAAATAAAGGGGAGGAAGATGTCACCCTATCTCAGCTGAATCTCATTGACCTTGCAGGCTCTGAAAGCTCTAAAACAGAGACCACTGGGTTGCGAAGGAAGGAAGGTTCTTATATCAACAAAAGTCTGTTGACTCTTGGGACTGTTATTGCAAAGTTGACAGATGGGAAGGCAACACATGTACCTTACAGGGATTCAAAACTTACTCGTCTATTGCAATCTTCTTTGAGTGGCCATGGGCGTGTTTCACTTATTTGCACTGTTACTCCTGCATCAAGCAGTACTGAGGAAACACATAACACATTGAAATTTGCGCATCGAACAAAGCATGTTGAGATTCAAGCATCTCAAAACAAGATTATAGATGAGAAATCTCTCATTAAGAAGTACCAGAAAGAGATCCTCAAGTTGAAGCAGGAATTAGACCAGCTAAAGAGAGGTATAACGGAACAGCCCTATCTGGTGGCATCTGATCAAGATCTTGTCTCACTAAAACAACAGCTGAAAGCTGGCCAAGTTAAGCTGCAGTCACGGTTGGAAGAAGAGGAACAAGAAAAGGCAGCTTTAATGGGAAGAATTCAGAGGCTGACAAAACTCATTTTAGTATCTACAAAGAATACCATCCCCTCAAACATTCCAGAAAGATCTGGTCATCGACGAAGACATTCTTTTGGAGAAGAGGAGTTAGCATACCTACCAAATAGGAGACGCGACTTCATGATTGAGGAGGATGATAGTCATGATTCAGAATTTTCTACAGAAGGAAAGGGCGAGAACAACATAGAGGATTCATTCAAGGAGGAGAAGAAGAACAAAAAACATGGCATGCTCAATTGGTTCAAACTACGGAAGCGAGAGAATGGTGGAACAACTACAAATATTGATAATGAAAGCTCTCCAACTTCATCATACATT

Fln Alignment:

Contig13046___IPL-AVKDVFSIIQETPDRE--FLLRVSYLEIYNEVINDLLDPAGQNLRIREDA-QGTFVEGIKEEVVLSPAHALSLIAAGEEHRHVGSNNFNLLSSRSHTIFTLTVESSPHGENKG-EEDVTLSQLNLIDLAGSESSKTETTGLR--RKEGSYINKSLLTLGTVIAKLTDGKATHVPYRDSKLTRLLQSSLSGHGRVSLICTVTPASSSTEETHNTLKFAHRTKHVEIQASQNKIIDEKSL
D5ACB2_______________LPLRASEDILKLMNRPFYREQGFRLWLSFFEIYGGKLYDLLGDR-RKLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIKK--HGEGKELKGGRTVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRAL-DNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGLSKSSNLKKDQSASSL

SNPs (tot: 3)

Position	A %	C %	G %	Probability
2094	75		25	1.0
2122	10	90		0.90298
2200	33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1411	1423	GAAG GAAG GAAG G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain