SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13039

Length: 2421 nt

UniGene Fasta

>sp_v3.0_unigene13039
GTATATATACTGACTTCGTCCACACGCACGACAAGTATGCCCGGCTTCTTTCGTGTGCTCAGCCCTGGGCGTCGTGACCGGTGTCTCCATTTCACAAATATATTCTCATATGTATTTACCCGCAACGAATCAATTTTAGGAGTCTTCTTCTGCTTCGTGGACAACGCACCTGTGTCTCGCAGGTTCAACAGGCTGTTTTATTTCTGAATCCTGACCTTGGCAGTCACTCAAATTCTTAAGCAACTTGGATCTGATCAGGGATACATATTTCTGTTGGGTTTCCGCAGTTCACTATCAGCATTGTGATAAGTAATCTAATATACTTCAAATCTATTCCAGTATATTCTTCTGTGCAATCTTGACCCTTGTTTCTGCGAACCAATTCAAATCCAGAAAGCAGAATGGCTTTTGAGTTTTGTTCAGAGGAGGTGAATCTAATGCAAACACAAACTGAGAAGAGATGGAATCCACTCCGGATTTTTTTGAAGATGCCTGGAGTGTCCTGAAACCAGATAATCTTGGTCGGGAGATTACACAGATAGCATTTCCAGCAGCATTGGCATTAACAGCTGATCCGCTTGCTTCCCTCATAGACACAGCATTCATTGGGCGAATAGGTTCAGTGGAGGTTGGTGCTGTGGGGGTTTCGATAGCAATATTCAGTCAAGTGACAAAAGTATTCAACTTTCCCCTTGTAAGTGTCACAACATCTCTAGTAGCTGCGGAGGATGCTACCACTGAAATAATGGATAAAGAATTGGATATGGAGGGATCTACAAAAGACGTTCTGGATAGTGATGAAAAAGATTTACTGATTTCTTCTACTTGTATCGAAAAGAAACTTCTTCCATCAGTTTCATCAGCTTTAGTACTTGGAGGAGCTATTGGCATTATTGAAGCTTTTATTCTTATCCTTGGAGCGGGACCCATCTTGAGCACCATGGGTGTAAATTCAGATTCACCCATGAAATTTCCTGCTGGGAAGTATCTGAAATTACGTGCACTTGGCGCTCCTGCAGTTGTTATATCACTTGCAACACAGGGTGTATTTCGAGGGTTTAAGGACACAACGACTCCTCTTTATGCAACAGTGGCAGGTGATATATCCAATATTGTTTTGGATCCAGTTCTTATATTTCTTCTTAGACTTGGAGTTAGTGGCGCAGCCGTTGCCCATGTTCTATCTCAGTATCTTATTGCTTATATTCTTTTGTGGAAATTGCACAAGCGAGTTGTGCTTTTACCACCAAAAATCAGTGACCTACGATTTGGTCACTTTTTCAAAAGTGGTCTTCTCCTACTTGCACGGGTTACAGCTGCAACGTTTTGCTTGACTTTAGCAGCATCCATGGCTGCACGGCAAGGACCAGAAACCATGGCAGCATTTCAGATTTGCATGCAAATTTGGATGGCTACATCTCTTCTTGCTGATGCATTGGCTCTTGCTGGACAGGCAATACTGGCAAGTGCCTTTGCTAAGGGTGACTATGAGAAAGCGAAGAATACAGCTGCCCGGACATTACAGATGGGTATGGTTCTTGGAGTCTTCCTTGCTGTTGTTCTTGGTGGGAGCTTGCACATGTTGGCCAAAGTGTTCACTAATGACGTGAATGTATTGAAGATTATGCGTATTGGTATTCCTTTTGTTGCTGCGACCCAACCACTAAATACTATGGCATTTGTTTTTGATGGAGTTAACTTTGGAGCTTCTGACTTTGCCTATGCAGCATATTCAATGGTATCTGTATCAATTTTTACCATTCTGTGCTTATTGATATTGTCCCCATACTGGGGCTTTGTTGGCATATGGATTGGCTTGACAATTTTGATGATTCTTCGGATGGTTGCCGGTATATGGAGGATAGGAACTGCAACTGGACCTTGGAGTTTCCTTCGAAGTGAAGAATGTTGGAGACAGAGAAGTTAAGTGAGTCAATCGGCTCTTGTATTTTTCACCGTAGCTGGTTGGTCGCCAAGCTAATTCTCGTCTTGTTTCATTTAAGTAACCCTGCTCACAGAAGAATGAGAACTTGGTGATCAATGCTGATTATGCCTGGAGAGAAGATAATTGAACTTTGTTGGAAGCAGGTCCCCGAGCATCCTTTATTCATCCACTTGTATAATATTAATTTATGTTATTGTTTAACTTCCTCGAGTGTCAACAGGAAGTGTATTATAGATCTCGTGATGCTATCAACCTTGGAATGTTTTCAAGGTACCAGAATGGAGACTACGTATATAAGACTACTACAAAGGTGGGTTTGGGAGGAGTTCAAATGTATTTCAGAAGCTTCAATCTAAAAACTGTTCTGAATGAATATTCTTTCTTCAGTTAATAATCCAAATAATACACAAAATTTTGGATGTATTTAAGAGTTCAATACAGGATGGAACAAATCAATCTATAAATATCCCTTATGC

Ace file of the UniGene sp_v3.0_unigene13039

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MATE efflux family protein [Arabidopsis thaliana] sp\|Q9SYD6.2\|MATE1_ARATH RecName: Full=MATE efflux family protein 1; AltName: Full=Aluminum-activated citrate transporter; AltName: Full=FRD-like protein; AltName: Full=MATE citrate transporter; AltName: Fu	-	-	0.0	50%
FL-Next	sp=MATE efflux family protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Sma3	DNA-damage-inducible protein f, putative	-	-	1.424e-24	-

Source	Gene names
Sma3	AACT1; AP4_H06.1; AT4g38380; At1g51340; At2g38330; At3g08040; F11M15.20; F17A17.38; F22I13.150; FRD3a; FRD3b; GSVIVT00005010001; GSVIVT00011594001; GSVIVT00018106001; GSVIVT00024609001; GSVIVT00025560001; GSVIVT00028804001; GSVIVT00028805001; GSVIVT000362

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-
Sma3	cellular iron ion homeostasis	GO:0006879	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G51340.2	MATE efflux family protein chr1:19032021-19034681 FORWARD LENGTH=515	58%
RefSeq	Arabidopsis thaliana	NP_974000.1	MATE efflux family protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002313336.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q9SYD6

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 489 - 515

Fln protein: MESTPDFFEDAWSVLKPDNLGREITQIAFPAALALTADPLASLIDTAFIGRIGSVEVGAVGVSIAIFSQVTKVFNFPLVSVTTSLVAAEDATTEIMDKELDMEGSTKDVLDSDEKDLLISSTCIEKKLLPSVSSALVLGGAIGIIEAFILILGAGPILSTMGVNSDSPMKFPAGKYLKLRALGAPAVVISLATQGVFRGFKDTTTPLYATVAGDISNIVLDPVLIFLLRLGVSGAAVAHVLSQYLIAYILLWKLHKRVVLLPPKISDLRFGHFFKSGLLLLARVTAATFCLTLAASMAARQGPETMAAFQICMQIWMATSLLADALALAGQAILASAFAKGDYEKAKNTAARTLQMGMVLGVFLAVVLGGSLHMLAKVFTNDVNVLKIMRIGIPFVAATQPLNTMAFVFDGVNFGASDFAYAAYSMVSVSIFTILCLLILSPYWGFVGIWIGLTILMILRMVAGIWRIGTATGPWSFLRSEECWRQRS*

Protein Length: 490

Fln nts: GTATATATACTGACTTCGTCCACACGCACGACAAGTATGCCCGGCTTCTTTCGTGTGCTCAGCCCTGGGCGTCGTGACCGGTGTCTCCATTTCACAAATATATTCTCATATGTATTTACCCGCAACGAATCAATTTTAGGAGTCTTCTTCTGCTTCGTGGACAACGCACCTGTGTCTCGCAGGTTCAACAGGCTGTTTTATTTCTGAATCCTGACCTTGGCAGTCACTCAAATTCTTAAGCAACTTGGATCTGATCAGGGATACATATTTCTGTTGGGTTTCCGCAGTTCACTATCAGCATTGTGATAAGTAATCTAATATACTTCAAATCTATTCCAGTATATTCTTCTGTGCAATCTTGACCCTTGTTTCTGCGAACCAATTCAAATCCAGAAAGCAGAATGGCTTTTGAGTTTTGTTCAGAGGAGGTGAATCTAATGCAAACACAAACTGAGAAGAG_-_ATGGAATCCACTCCGGATTTTTTTGAAGATGCCTGGAGTGTCCTGAAACCAGATAATCTTGGTCGGGAGATTACACAGATAGCATTTCCAGCAGCATTGGCATTAACAGCTGATCCGCTTGCTTCCCTCATAGACACAGCATTCATTGGGCGAATAGGTTCAGTGGAGGTTGGTGCTGTGGGGGTTTCGATAGCAATATTCAGTCAAGTGACAAAAGTATTCAACTTTCCCCTTGTAAGTGTCACAACATCTCTAGTAGCTGCGGAGGATGCTACCACTGAAATAATGGATAAAGAATTGGATATGGAGGGATCTACAAAAGACGTTCTGGATAGTGATGAAAAAGATTTACTGATTTCTTCTACTTGTATCGAAAAGAAACTTCTTCCATCAGTTTCATCAGCTTTAGTACTTGGAGGAGCTATTGGCATTATTGAAGCTTTTATTCTTATCCTTGGAGCGGGACCCATCTTGAGCACCATGGGTGTAAATTCAGATTCACCCATGAAATTTCCTGCTGGGAAGTATCTGAAATTACGTGCACTTGGCGCTCCTGCAGTTGTTATATCACTTGCAACACAGGGTGTATTTCGAGGGTTTAAGGACACAACGACTCCTCTTTATGCAACAGTGGCAGGTGATATATCCAATATTGTTTTGGATCCAGTTCTTATATTTCTTCTTAGACTTGGAGTTAGTGGCGCAGCCGTTGCCCATGTTCTATCTCAGTATCTTATTGCTTATATTCTTTTGTGGAAATTGCACAAGCGAGTTGTGCTTTTACCACCAAAAATCAGTGACCTACGATTTGGTCACTTTTTCAAAAGTGGTCTTCTCCTACTTGCACGGGTTACAGCTGCAACGTTTTGCTTGACTTTAGCAGCATCCATGGCTGCACGGCAAGGACCAGAAACCATGGCAGCATTTCAGATTTGCATGCAAATTTGGATGGCTACATCTCTTCTTGCTGATGCATTGGCTCTTGCTGGACAGGCAATACTGGCAAGTGCCTTTGCTAAGGGTGACTATGAGAAAGCGAAGAATACAGCTGCCCGGACATTACAGATGGGTATGGTTCTTGGAGTCTTCCTTGCTGTTGTTCTTGGTGGGAGCTTGCACATGTTGGCCAAAGTGTTCACTAATGACGTGAATGTATTGAAGATTATGCGTATTGGTATTCCTTTTGTTGCTGCGACCCAACCACTAAATACTATGGCATTTGTTTTTGATGGAGTTAACTTTGGAGCTTCTGACTTTGCCTATGCAGCATATTCAATGGTATCTGTATCAATTTTTACCATTCTGTGCTTATTGATATTGTCCCCATACTGGGGCTTTGTTGGCATATGGATTGGCTTGACAATTTTGATGATTCTTCGGATGGTTGCCGGTATATGGAGGATAGGAACTGCAACTGGACCTTGGAGTTTCCTTCGAAGTGAAGAATGTTGGAGACAGAGAAGTTAAGTGAGTCAATCGGCTCTTGTATTTTTCACCGTAGCTGGTTGGTCGCCAAGCTAATTCTCGTCTTGTTTCATTTAAGTAACCCTGCTCACAGAAGAATGAGAACTTGGTGATCAATGCTGATTATGCCTGGAGAGAAGATAATTGAACTTTGTTGGAAGCAGGTCCCCGAGCATCCTTTATTCATCCACTTGTATAATATTAATTTATGTTATTGTTTAACTTCCTCGAGTGTCAACAGGAAGTGTATTATAGATCTCGTGATGCTATCAACCTTGGAATGTTTTCAAGGTACCAGAATGGAGACTACGTATATAAGACTACTACAAAGGTGGGTTTGGGAGGAGTTCAAATGTATTTCAGAAGCTTCAATCTAAAAACTGTTCTGAATGAATATTCTTTCTTCAGTTAATAATCCAAATAATACACAAAATTTTGGATGTATTTAAGAGTTCAATACAGGATGGAACAAATCAATCTATAAATATCCCTTATGC

Fln Alignment:

Contig13039___FFEDAWSVLKPDNLGREITQIXXXXXXXXXXXXXXXXIDTAFIGRIGSVEVGAVGVSIAIFSQVTKVFNFPLVSVTTSLVAAEDATTEIMDK--------ELDMEGSTKDVLD---SDEKDLL------------ISSTCIEKKLLPSVSSALVLGGAIGIIEAFILILGAGPILSTMGVNSDSPMKFPAGKYLKLRALGAPAVVISLATQGVFRGFKDTTTPLYATVAGDISNIVLDPVLIFLLRLGVSGAAVAHVLSQYLIAYILLWKLHKRVVLLPPKISDLRFGHFFKSGLLLLARVTAATFCLTLAASMAARQGPETMAAFQICMQIWMXXXXXXXXXXXXXXXXXXXXXXKGDYEKAKNTAARTLQMXXXXXXXXXXXXXXXXHMLAKVFTNDVNVLKIMRIGIPFVAATQPLNTMAFVFDGVNFGASDFAYAAYSMVSVSIFTILCLLILSPYWGFVGIWIGLTILMILRMVAGIWRIGTATGPWSFLRS
Q9SYD6_______________FFSDFRSVLKFDELGLEIARIALPAALALTADPIASLVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSITTSFVAEEDACSSQQDTVRDHKECIEIGINNPTEETIELIPEKHKDSLSDEFKTSSSIFSISKPPAKKRNIPSASSALIIGGVLGLFQAVFLISAAKPLLSFMGVKHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWKLMGQVDIFNMSTKHLQFCRFMKNGFLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYAVAGQAILASAFAKKDYKRAAATASRVLQLGLVLGFVLAVILGAGLHFGARVFTKDDKVLHLISIGLPFVAGTQPINALAFVFDGVNFGASDFGYAAASLVMVAIVSILCLLFLSSTHGFIGLWFGLTIYMSLRAAVGFWRIGTGTGPWSFLRS

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
175		25		75	0.996473
181		75	25		0.996473
182	25			75	0.996473
184		25	75		0.996473
185		75		25	0.996473
186	75			25	0.996473
189		25		75	0.996473
192	75		25		0.996473
193	75			25	0.996473
196		25	75		0.996473
197			75	25	0.996473
199	25			75	0.996473
224			25	75	0.996473
227	75			25	0.996473
234		25		75	0.996473
1464	66		33		1.0
1619	87		12		0.992554
1658	14	85			0.993533
1661		83	16		0.994512
1866			83	16	0.994512
1882	87		12		0.992554
1883		87	12		0.992554
1884			12	87	0.992554
1895		12	87		0.992554
2102		66		33	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain