SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13023

Length: 1834 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene13023

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Progesterone 5-beta-reductase n=3 Tax=Asclepiadeae RepID=D6N9X6_9GENT	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Putative progesterone 5-beta-reductase	-	-	4.106e-12	-

Source	Gene names
Sma3	AT4G24220; AT4g24220; At4g24220; At4g24220/T22A6.50; GSVIVT00007733001; GSVIVT00014929001; GSVIVT00024106001; GSVIVT00033107001; LOC_Os03g30870; LOC_Os03g32170; MtrDRAFT_AC158501g29v2; MtrDRAFT_AC158501g31v2; MtrDRAFT_AC158501g32v2; Nt-5beta-POR-A; Nt-5be

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	xylem and phloem pattern formation	GO:0010051	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G24220.1	VEP1, AWI31 NAD(P)-binding Rossmann-fold superfamily protein chr4:12565219-12566474 FORWARD LENGTH=388	59%
RefSeq	Arabidopsis thaliana	NP_194153.1	WcaG domain-containing protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002302420.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUS7

Fln msg:

Fln protein: MSWYSWWTGSLGTRGRKFQTNGESSRDKSGRQQGVALVIGITGIVGNCLAEILPLSDTPGGPWKVYGIARRPKPDWSPDSPVEYIQCDVLDREQTLEKISSLKDVTHLFWVVWVSRETEEQNCEDNGRMLSNVLDALLPNAENLQHVCLQTGGKHYIGSFDVVAMNRKYQPHEAPFHEELPRLPVPNFYYTLEDIVFEAAKKKEGLTWSIHRPAYIFGFSPWSMMNVLGTLCVYAAICKHEGLPFKYPGNIISWEQFMDASDAELIAEQEIWAATDPYAKNQTFNCANGDVYKWKHLWGILAEKFDLKPLPYEGEGFSLAEVMKDKGPVWDAIVNQNKLHPTKIEEVGNWWFADLILNPPWGAVLSMNKSKEYGFFGFRNTETSMGQWVDKIRSSNIVP*

Protein Length: 401

Fln nts: ATACCCGCAATGCATACTTAATGCAGATCCGGCTACCTTGCCCTGTGCAAACCTACCAGTCCATGATCTACACCAAAATGCCCAAGGATCTACCATCCCTGCTGCTTCACGCATATAAATCTCACGATAGCTCGATTTTTATGTCTGTGCTGCCGCGCCCTTTGCTCAAGTGAATGAATTTGTTGCAGGAATCCAGTTCGAGTGTCTGCTCAGCTGTGTTCATTTCTTCACTGCGACGCTAATTCCATTTGGGACTCGCAGCTCATCCTCAGTCAGGTCATTTGGCTCCTTTCTTGGTTTGGTGTGTGGAGTAGTGTGCATTTTATCACA_-_ATGAGCTGGTATTCTTGGTGGACAGGTTCCCTTGGCACTCGCGGGAGAAAATTCCAAACCAATGGTGAAAGCTCCAGAGATAAATCTGGGAGGCAGCAGGGAGTGGCGTTGGTCATAGGGATAACAGGAATTGTAGGAAATTGCTTGGCAGAAATATTGCCATTATCTGACACTCCTGGTGGACCTTGGAAAGTTTATGGAATTGCTAGGAGGCCTAAGCCAGATTGGTCTCCAGATAGTCCAGTGGAATACATTCAATGTGATGTTTTAGATAGAGAGCAAACTTTAGAAAAGATCTCATCATTGAAGGATGTCACACATCTCTTTTGGGTTGTTTGGGTTAGCAGAGAGACAGAGGAGCAGAACTGTGAGGACAATGGAAGAATGTTGAGTAATGTATTAGATGCCCTCTTGCCTAATGCAGAGAATTTACAGCACGTCTGTCTTCAGACTGGAGGGAAACACTACATTGGTTCATTTGATGTAGTGGCCATGAATCGTAAATATCAGCCCCACGAGGCACCCTTTCACGAAGAGCTACCTAGGCTACCTGTGCCCAATTTCTACTACACTCTCGAGGATATTGTATTTGAGGCTGCAAAGAAGAAAGAAGGATTAACTTGGTCCATTCACCGTCCAGCATACATATTTGGCTTCTCTCCTTGGAGCATGATGAATGTTTTAGGCACCCTCTGTGTTTACGCTGCCATTTGCAAACATGAGGGTTTGCCTTTCAAGTACCCAGGGAACATAATTTCGTGGGAACAGTTTATGGATGCATCTGATGCAGAATTAATTGCAGAACAAGAAATTTGGGCTGCCACAGATCCTTATGCCAAGAACCAGACCTTTAATTGTGCTAATGGAGACGTGTATAAATGGAAACACCTCTGGGGAATACTCGCAGAGAAATTTGATCTGAAACCATTACCATATGAGGGTGAAGGCTTCAGTCTGGCTGAGGTGATGAAAGACAAAGGTCCGGTCTGGGATGCAATTGTCAATCAAAATAAGCTCCACCCAACAAAGATTGAAGAAGTTGGAAACTGGTGGTTTGCAGATTTAATACTAAATCCGCCTTGGGGAGCTGTACTTAGCATGAATAAGAGTAAAGAGTATGGTTTCTTTGGATTTCGAAACACAGAAACTTCCATGGGGCAATGGGTTGACAAAATCAGGTCATCTAATATTGTTCCCTAG___GGTTGATCGATCCCTATGTATTGAATTAAAACCAAGCGGAGGGCTTACTTCACTGTTCATTCAGAACTTGCTTTTGTGATTCAACTTTCAAATTGTCCAGTGGAGGATGCTGGGTAGTTATGCTATATTCTGAAAGTTCTAGTTCGAGGTGTTGCTAATACCAGAGGATAGTTCTAGTGGGACGTGCTTTTGTCTATGTCGAAGTACTGTTTGTGAGATGAGTTAAAAATTGCTGATATTTGATGTTGTGTAATTTGCAGTGGACTTACATAAAGAGCTGAATCTCCAGCATAGTATTTCTACC

Fln Alignment:

Contig13023___MSWYSWWTGSLGTRGRKFQTNGESSRDKSGRQQGVALVIGITGIVGNCLAEILPLSDTPGGPWKVYGIARRPKPDWSPDSPVEYIQCDVLDREQTLEKISSLKDVTHLFWVVWVSRETEEQNCEDNGRMLSNVLDALLPNAENLQHVCLQTGGKHYIGSFDVVAMNRKYQPHEAPFHEELPRLPVPNFYYTLEDIVFEAAKKKEGLTWSIHRPAYIFGFSPWSMMNVLGTLCVYAAICKHEGLPFKYPGNIISWEQFMDASDAELIAEQEIWAATDPYAKNQTFNCANGDVYKWKHLWGILAEKFDLKPLPYEGEGFSLAEVMKDKGPVWDAIVNQNKLHPTKIEEVGNWWFADLILNPPWGAVLSMNKSKEYGFFGFRNTETSMGQWVDKIRSSNIVP
A9NUS7_______________MSWYSWWTGSLGPRGSKFQTNGESSGEKPEKQQGVALVIGVTGIVGNCLAEILPLSDTPGGPWKVYGVARRPKPDWSPDSPVEYVQCDVLDREHTLEKISPLKDVTHLFWVVWVNRETEEQNCEDNGRMLSNVLDALLPNAENLQHICLQTGGKHYLGPFDAVARNRDFQPHEPPFHEELPRLPAPNFYYTLEDIVFEAAKKKQGLTWSIHRPTVIFGFSPWSLMNIVGSLCVYAAICKHEGLPFKYPGNIITWEQFMDVSDAELIAEQEIWAATDLYAKNQAFNCANGDVFKWKRLWKIIAEKFDLELLSYEGEGFSLAEVMKDKGPVWDAIVGENKLHPTKIEEVGNWWFADLVLNPPWGTVLSMNKSKEYGFFGFRNTETSMGQWIDKVRSSNIVP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
640			83	16	0.994512
642	83		16		0.994512
643			16	83	0.994512
651	80		20		0.995493
909	88		11		0.923564
930		80		19	1.0
1106		16	83		0.994512
1109			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain