SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13001

Length: 1713 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene13001

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] gb\|AED94636.1\| glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana]	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Glycerophosphodiester phosphodiesterase, putative	-	-	5.817e-09	-

Source	Gene names
Sma3	AT5G41080; At3g02040; At5g41080; At5g41080/MEE6_15; At5g43300; GDPD; GSVIVT00037910001; H0718E12.3; OJ1471_E11.19; OSJNBa0033D24.22; OSJNBa0072K14.4; Os02g0514500; Os04g0394100; Os08g0535700; OsI_07393; OsI_15696; OsI_30040; OsJ_06895; OsJ_14614; OsJ_2808

Source	GOs	Term	Type	Identity
Sma3	glycerophosphodiester phosphodiesterase activity	GO:0008889	Molecular Function	-
Sma3	glycerol metabolic process	GO:0006071	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycerophosphoryl diester phosphodiesterase	IPR004129	-	0.0	-
Sma3	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	IPR017946	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G41080.1	PLC-like phosphodiesterases superfamily protein chr5:16441858-16443835 FORWARD LENGTH=374	46%
RefSeq	Arabidopsis thaliana	NP_974865.1	glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002298651.1	predicted protein, partial [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB23

Fln msg: your sequence is longer than subject: 374 - 256

Fln protein: MSLRSSILTRSMIIDPAVMQQASAPENLNILYTGPRMAQFLRDNKIESGQQSLTVLGHRGSGKNRVFSAGDAPNVRPSIMENTIKSLAQAAENGVDFVEFDVQVTKDGHAVIFHDDYIITDDKGLHNARRIGDLSLQEYLSMGFQPDGLEIRSPLVRKANDGSICKWIVNVQDRLCTLKDAFENVPLFVGFNIEVKFDDEIEVSEVELQRVIGTVVKEVAMYGKGRKVFYSSFHPDAVDLLRKIQTEYPVLFLTDGGTHLYKDERRNSIESAVEICLKCGLQGIVSEVRAILENPESVSKVKDAGLCLLTYGDLNNFVEVLQKQKEMGVDGVIVDHVLEMVSAVRNATISGITLTSCDDIRFRDITSFLKEAA*

Protein Length: 375

Fln nts: TCTTATTATTTAAGGCGCCCGTATCCTGAGCCGATAGTCATGCCGGCAATCACAAATATTTGGAGGAAGCGTGGACGAAAAGAGTAAGCGCGTGAAGTTGTCAGTACTCCATTTAGTTTATCAATAGCTCTGCGGACTCGCGTTAGCGTATAATCTGTGTGTTTTTCCTCTCTCACATCGATTGTTTCTCGCCTCGGTTGACATCGGCAAATTTGGACTGAGACTCCTGCGCCAGTTCGTCA_-_ATGTCTCTTCGTTCATCAATACTTACACGGTCAATGATTATAGATCCTGCTGTAATGCAGCAGGCTTCAGCTCCTGAAAATCTCAATATCCTATACACAGGCCCGCGAATGGCCCAATTTTTGCGTGACAATAAAATAGAAAGCGGGCAACAATCATTGACTGTTCTGGGCCATCGCGGTTCTGGCAAGAACAGAGTATTTAGTGCTGGAGACGCTCCTAATGTCAGACCTTCTATTATGGAAAATACCATAAAATCTTTGGCCCAGGCTGCAGAGAATGGCGTAGATTTTGTTGAATTCGATGTACAGGTCACTAAAGACGGTCATGCTGTCATCTTCCATGACGATTATATAATAACAGATGACAAGGGATTACACAATGCAAGGCGAATTGGAGACCTCAGTCTTCAAGAATATCTTTCCATGGGATTCCAACCTGATGGGCTAGAGATCCGAAGTCCTCTGGTTCGAAAAGCCAATGATGGCAGTATTTGCAAATGGATTGTGAATGTGCAAGACCGCCTATGTACTCTTAAAGATGCATTCGAGAATGTTCCTCTCTTTGTGGGATTTAACATAGAGGTGAAATTTGATGATGAAATTGAGGTTTCTGAAGTCGAACTTCAACGGGTGATTGGTACCGTTGTCAAGGAAGTGGCAATGTATGGAAAGGGCAGAAAAGTTTTCTATTCCAGCTTCCACCCAGATGCAGTGGATTTATTGCGTAAAATTCAGACTGAGTACCCGGTACTCTTTTTAACAGACGGAGGTACTCATCTTTACAAGGATGAAAGAAGAAATTCGATCGAAAGTGCGGTGGAAATTTGCCTAAAATGTGGATTGCAAGGAATTGTCAGCGAAGTTAGAGCAATTTTAGAGAACCCTGAATCAGTCTCCAAAGTTAAGGATGCTGGATTATGCCTTCTCACTTATGGGGATCTCAATAACTTTGTCGAAGTATTGCAGAAGCAGAAAGAAATGGGTGTTGATGGGGTGATAGTGGATCATGTTCTGGAGATGGTTAGTGCTGTTCGAAATGCAACGATTTCTGGTATCACGTTAACGTCCTGTGATGACATCCGCTTCAGGGATATCACTTCGTTTCTAAAAGAGGCTGCTTAG___AAGTGCACGTATAGGTTTTTCGAAATGCAACGATTTCTGGTATCACGTTAACGTGCTGTGATGGCATCCGCTTCAGGGATATCACTTCGTTTCTAAAAGAGGCTGCTTAGAAGAGCACGTATAGGTTTTTAATAATGTTAAATACACTCCTGTTATCATCATTTGTTTATTTATTTGGCCTACTGGAATCTGGCTTTTGGGTTGCCATTGGGTCATAATGTTTTTTTTTTGTCTTATTGGTTTATCATAGTTTTCAGTTTTTTAAGTTGTAATTTGAGTAGTTGTAATTTGAGTGAAGCCTAAGATTAAATATAGAGGCTGCAATTATAACACCAAGAACATATTTTCA

Fln Alignment:

Contig13001___KGLHNARRIGDLSLQEYLSMGFQPDGLEIRSPLVRKANDGSICKWIVNVQDRLCTLKDAFENVPLFVGFNIEVKFDDEIEVSEVELQRVIGTVVKEVAMYGKGRKVFYSSFHPDAVDLLRKIQTEYPVLFLTDGGTHLYKDERRNSIESAVEICLKCGLQGIVSEVRAILENPESVSKVKDAGLCLLTYGDLNNFVEVLQKQKEMGVDGVIVDHVLEMVSAVRNATISGITLTSCDDIRFRDITSFLKEAA
D5AB23_______________QGLHNERRIGDLTLEEYLSVGFQADGLEIQSPLVRKANDGSICKWIVNVQDRLCTLKDAFENVPLCVGFNIEVKFDDEIEVSEAELQRVTGTVLKEVAMYGKGRKVFYSSFHPDAVDLLRKMQTEYPVLFLTEGGTYLYKDERKNSIESAVEVCLKCGLQGIVSEVEAILQNPGLVSKVKDAGLCLLTYGDLNNFVEVLHKQRETGVDGVIVDHVLEMVTAVRNATISGSTLTSCDDIRYRDVSSILKAAA

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
593		20		80	0.995493
611		80	20		0.995493
625	83		16		0.994512
915	88			11	0.923564
916	88		11		0.923564
944		90	10		0.90298
977			10	90	0.90298
1122		23	76		1.0
1135		76		23	1.0
1157		25		75	1.0
1181		10	90		0.90298
1182			90	10	0.90298
1183	90		10		0.90298
1186	10			90	0.90298
1188	88			11	0.923564
1189	88	11			0.923564
1190	11	22		66	0.999999
1224	87	12			0.992554
1225		22		77	0.999999
1226		11	88		0.923564
1227			88	11	0.923564
1282	75		25		1.0
1296		25	75		1.0
1310	25		75		1.0
1328		85		14	0.993533
1331		85		14	0.993533
1371	13			86	0.999973
1472			85	14	0.993533
1482		14	85		0.993533
1483	14	85			0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain