SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12999

Length: 1296 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12999

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Harpin binding protein 1 n=2 Tax=Glycine max RepID=Q5QJB6_SOYBN	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	structural molecule activity	GO:0005198	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipocalin	IPR002345	-	0.0	-
Sma3	Plastid lipid-associated protein/fibrillin conserved domain	IPR006843	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G23400.1	FIB4 Plastid-lipid associated protein PAP / fibrillin family protein chr3:8376636-8378225 REVERSE LENGTH=284	59%
RefSeq	Arabidopsis thaliana	NP_566728.1	putative plastid-lipid-associated protein 6 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002312588.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ07

Fln msg:

Fln protein: MISARACACTLPLPVPVGKSWPKNAQELRIRRVETPGRRGGRKIISMRMVGARSWRATADADATATATAEEEPPAAEPSPPTASLSSIKTHLLSAVAGLDRGLVANEADVMIVESVAKKLEASGGIVDLSTGLDKLQGRWQLIYSSAFASGSLGGLRPGPPTGRLPLTLGQVFQRIDIVGREFDNIVNLQIGTPWPLPQIEVIATLAHSFELLGRASIRIIFERTIVQTAGSLSELPPVDLPRLPDFLRPPSSVRSGDFEVTFVDDDFRITRGDRGELRVFLKS*

Protein Length: 286

Fln nts: ATGGGGAGGCTTGTGGGCGAATGGCGAGGACGTTGGCGCGTCCATAAATAATCTATC_-_ATGATATCTGCTCGAGCCTGTGCCTGCACTCTCCCCTTGCCAGTGCCAGTTGGTAAAAGCTGGCCAAAAAATGCTCAAGAACTACGAATACGACGGGTGGAAACGCCAGGAAGAAGAGGAGGCCGGAAAATAATAAGTATGCGGATGGTTGGCGCCAGGAGTTGGAGGGCAACGGCCGATGCCGATGCCACCGCTACCGCTACCGCTGAGGAGGAACCACCAGCAGCAGAACCATCACCACCTACTGCTAGTCTTTCTTCTATCAAGACACACTTACTAAGTGCTGTTGCTGGGTTGGATAGAGGATTGGTTGCAAATGAAGCTGACGTGATGATTGTGGAGAGTGTTGCAAAGAAGCTCGAAGCTTCTGGAGGCATTGTGGACTTATCTACAGGTCTTGACAAACTGCAGGGAAGATGGCAATTAATTTACAGCAGTGCCTTCGCATCTGGCAGTCTTGGTGGCCTTCGTCCAGGCCCCCCTACAGGAAGGCTTCCCTTGACTTTGGGTCAGGTTTTTCAACGCATTGATATTGTTGGAAGGGAGTTTGATAACATTGTAAACCTTCAGATTGGCACTCCCTGGCCACTCCCACAGATTGAAGTTATTGCTACTTTGGCCCACAGCTTTGAACTTCTAGGTCGTGCAAGTATTAGAATAATCTTTGAGAGGACTATCGTCCAGACAGCAGGTAGCCTATCGGAACTTCCTCCAGTTGACCTGCCTCGACTGCCAGACTTTTTAAGGCCACCATCTAGTGTTCGAAGTGGAGATTTTGAAGTCACTTTTGTGGATGATGATTTTCGGATCACACGTGGGGATCGTGGGGAACTCAGAGTGTTCTTGAAATCATAA___CAGGCAGATTATATAAGTGAAAGAATAGGCCATGTGCCAGTAATAGCAAAAGTTTAAAAATGGCATCTTGCAATATTCAATTTCAACTATGGCAGGCATCTCTATATGGCCCCTGCATCTTTCTGGAAAAAATAAATACTAGGAATCAAGCACAAACGTTGCCATATCAGAAAAAGCGTACAAATCCACAGAGATAAATAATGAGTGCTCTTTCCCCCTACTATTACCTCTGGATGCTATCACTATGAAGCAATGTATAGCATAAAATCTCCATCAAGACCAAATATAAACACTGAATCAAGATACACTGAATGATGCTTTTTCTTTCGTTAAATTCCATTTCGGGGCATATTTTACGCATGGCACATTCTCAGAACGGCCTAC

Fln Alignment:

Contig12999___MISARACACTLPLPVPVGKSWPKNAQELRIRRVETPGRRGGRKIISMRMVGARSWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSIKTHLLSAVAGLDRGLVANEADVMIVESVAKKLEASGGIVDLSTGLDKLQGRWQLIYXXXXXXXXXXXXXXXXXXXXXXXXXXQVFQRIDIVGREFDNIVNLQIGTPWPLPQIEVIATLAHSFELLGRASIRIIFERTIVQTAGSLSEXXXXXXXXXXXXXXXXSSVRSGDFEVTFVDDDFRITRGDRGELRVFLKS
A9NZ07_______________MIPTLSRACTVSLPLPNGNCRPKNAQELRIRGVETSG-RGGRKIMRMRIVGAWSWRATAAATATATAEEEEAAAAAPPQPTTCP-SSLKPHLLSAVAGLDRGLVANEADVMTVESAAKKLEASGGIVDLSTGLDKLQGRWRLIYSSAFASGSLGGLRPGPPTGRLPLTLGQVFQRIDIVGREFDNIVNLQIVTPWPLPPIEVIANLAHSFELVGRASIRIIFEKTIIQTAGSLSQLPPVELPQLPEFLRPPSSVRSGDFEVTFVDDDLRVTRGDRGELRVFLNS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
321		80	20		0.995493
323	80		20		0.995493
325	80		20		0.995493
326	20	80			0.995493
331	20			80	0.995493
336	66	33			1.0
344		16		83	0.994512
721	20			80	0.995493
970	80	20			0.995493
972	80			20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
247	264	ACCGCT ACCGCT ACCGCT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain