SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12989

Length: 2417 nt

UniGene Fasta

>sp_v3.0_unigene12989
AATGTCTGAATTGGAAAAAAGAAAGGAAGAGGGGACCTACAAAAATAATCCAATTCTCTTAGGTGAACCAGGAGTAGGAAAAACTGCCATTGCAGAAGGGCTAGCTATTAGTATTGTTGAAGGAAATGTACCCAATTTCCTTCATGGAAAACGGGTGATGTCCTTAGATATTGGTTTATTAATGTCTGGTGCCAAAGAACGAGGTGAACTAGAGGCACGTGTAACTAGTTTGATTGATGAAATACAAAGGGCAGGTGATGTTATTCTTATAATTGATGAAGTTCATACTCTTGTGGGCTCGGGTTCTGTTGGAAGAGGAAATAGTGGTTCTGGCCTTGACATTGCTAGCTTACTGAAGCCTGCCCTTGCTAGAGGTCAGCTACAGTGCATTGCTGCTACAACGCTCGATGAACACAGAAAGCACATTGAAAAAGATAAAGCACTTGCTCGTCGTTTTCAGCCTGTTCTTGTAAATGAGCCAAGTCAGGTTGATGCTGTGAAAATACTCATGGGATTGCTTGAAAAGTATGAAGCCCACCATAAGTGCAGGTTTACTACTGAGGCTGTAGATGCAGCCGTGTATTTATCTCAAAGATATATTGCAGACAGATATCTTCCAGATAAAGCTATTGATCTGATTGATGAAGCAGGAAGCCATGCCCGAATAAAAGCTTGCAACAGAAGGAAGCAACGACAAACAGACATACTTTCAAAGCACCCTAATGAATATTGGCGGGAAATTTGGGCAGTTCAAAAATTCCATGAAACTGCACCATCATCGAGAAGCAGTCAACATCGACGTAAACAGGCTAGAAAAACTGGTGATGGTTCTGCTGACACTAGTGTAGATAGCGATGCAGAAGTTGTGCCTTTGCCAACTGTTGCTTCTATTTCAAATGATGATGAATATGATAGCGGGCCTGTTGTTGTTGAGCCAGATGACATAGCAGCTATTGCATCCATGTGGTCAGGAATTCCTGTTGAACAGCTTACTGCAGATGAACAACTTAAGTTGATTGGTCTTGAGAAAAGGCTCCGAACTCGCGTTGTTGGTCAAGATGATGCTGTCAGTGCCATTGCTAGAGCAATAAGAAGAGCCCGTGTAGGCTTGAAGGATCCTGATCGACCCATTGCTACTATGCTTTTTTGTGGTCCAACTGGAGTTGGCAAGACAGAATTGACTAAGGCCTTGGCTGAATTATATTTTGGATCAGAAGCAGCCATGATCAGGCTGGACATGAGTGAATACATGGAACGACATACTGTGAGCAAATTGATTGGGTCACCACCTGGATATGTAGGATATGGTGATGGGGGCACCCTAACTGAGGCTGTAAGACGGAAACCATTTACAATAATATTGCTTGATGAAATTGAGAAAGCCCACCCTGATATTTTCAACATCCTACTCCAAGTGTTTGAGGATGGCCATCTCTCTGATTCCCAGGGTCGAAGAGTATCTTTTAAAAATACCCTCATTATTATGACATCCAATGTTGGATCCACAGCGATTGCAAAGGGTGGAAGTAATAGAATTGGATTTGCCTTTGTAGAAGAGGAGCATGAAGGAAGATATTCAGCCTTAAAAGCATTAGTCATGGAGGAATTGAATGGCTATTTTCGGCCAGAATTATTAAATAGGATTGATGATGTAGTTGTTTTCCGTTCATTAGAAAAGTCCCAGGTACGTGAGATAGTTGATTTGATGTTAACCGAGACTAGAGAACGACTTTCTACTTCTAGACATGGAGTTGGTTTAGAAGTGTCAGAGGCTGTGCTGAACCTCATATGTGAACAAGGTTATGATCGCAGTTATGGTGCAAGGCCTCTAAAGAGAGCACTTGTGCGTTTGGTCGAGGATGTCATAAGTGAAGCATTTCTAGCAGATAACTATCAGGCAGGTGACACTGCTCTTGTTGATCTGGATGCTTCTGGACATCCTTTTGTCACGTGTCATCGGAAACCAAACTGCTATGAGCATGGAATTTGCTTATCCGTCGCAACATGAGCTTGAATCAGTATGCTTCGCAAAAGTAGCTATTCCCATCAATATTTTTTAGCCGTTATATGTGCATTTCATTCGTCAGAGCCTGTAAAGCTAATTATTCTTACCATTTAATGCTAGCAATTGTACATTTATGTATATATACACATATATATTGTAGAGAGATCTTTCTTGTCTGATTGTTGTTAGACATTATAGTTGAAGGTTCATAATGGTCCAAATTGGGTAAGTATTTATTGGATCACTGATACTGTATCCAAGTTATGTTAAAGCCTGTTTGAGCAATGTGCAAGTGTTGTAAATGGGCTGCTCCCAATAATTTCATCGAGGAGATTTAACTCGTGTTTTTAATTTTGAGCTAATTCTTGAGTCTTACCATTTAATGCATCCTTTGAAGGCCCATTATCATTCC

Ace file of the UniGene sp_v3.0_unigene12989

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent Clp protease ATP-binding subunit precursor [Oryza sativa Indica Group]	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Heat shock protein 101	-	-	6.285e-16	-

Source	Gene names
Sma3	AT4g14670; At1g74310; At2g25140; At3g48870; At5g15450; At5g50920; At5g51070; AtclpC; CD4A; CD4B; CHLREDRAFT_172454; CHLREDRAFT_195417; CHLREDRAFT_195422; CHLREDRAFT_195423; CLP2; CLPA; CLPB1; CLPB2; CLPB3; CLPC1; CLPC2; CLPD1; ClpC; ClpN; ERD1; F1O17.2; G

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	Tic complex	GO:0031897	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	nuclease activity	GO:0004518	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	nucleotide-excision repair	GO:0006289	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	chloroplast organization	GO:0009658	Biological Process	-
Sma3	regulation of chlorophyll biosynthetic process	GO:0010380	Biological Process	-
Sma3	protein metabolic process	GO:0019538	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	protein unfolding	GO:0043335	Biological Process	-
Sma3	protein import into chloroplast stroma	GO:0045037	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	UVR domain	IPR001943	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Clp, N-terminal	IPR004176	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	Chaperonin ClpB	IPR017730	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Chaperonin ClpA/B, conserved site	IPR018368	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G51070.1	ERD1, CLPD, SAG15 Clp ATPase chr5:20764479-20768481 FORWARD LENGTH=945	68%
RefSeq	Arabidopsis thaliana	NP_568750.1	ERD1 protein [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002318194.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEG2

Fln msg: your sequence is longer than subject: 669 - 323

Fln protein: MSELEKRKEEGTYKNNPILLGEPGVGKTAIAEGLAISIVEGNVPNFLHGKRVMSLDIGLLMSGAKERGELEARVTSLIDEIQRAGDVILIIDEVHTLVGSGSVGRGNSGSGLDIASLLKPALARGQLQCIAATTLDEHRKHIEKDKALARRFQPVLVNEPSQVDAVKILMGLLEKYEAHHKCRFTTEAVDAAVYLSQRYIADRYLPDKAIDLIDEAGSHARIKACNRRKQRQTDILSKHPNEYWREIWAVQKFHETAPSSRSSQHRRKQARKTGDGSADTSVDSDAEVVPLPTVASISNDDEYDSGPVVVEPDDIAAIASMWSGIPVEQLTADEQLKLIGLEKRLRTRVVGQDDAVSAIARAIRRARVGLKDPDRPIATMLFCGPTGVGKTELTKALAELYFGSEAAMIRLDMSEYMERHTVSKLIGSPPGYVGYGDGGTLTEAVRRKPFTIILLDEIEKAHPDIFNILLQVFEDGHLSDSQGRRVSFKNTLIIMTSNVGSTAIAKGGSNRIGFAFVEEEHEGRYSALKALVMEELNGYFRPELLNRIDDVVVFRSLEKSQVREIVDLMLTETRERLSTSRHGVGLEVSEAVLNLICEQGYDRSYGARPLKRALVRLVEDVISEAFLADNYQAGDTALVDLDASGHPFVTCHRKPNCYEHGICLSVAT*

Protein Length: 670

Fln nts: A_-_ATGTCTGAATTGGAAAAAAGAAAGGAAGAGGGGACCTACAAAAATAATCCAATTCTCTTAGGTGAACCAGGAGTAGGAAAAACTGCCATTGCAGAAGGGCTAGCTATTAGTATTGTTGAAGGAAATGTACCCAATTTCCTTCATGGAAAACGGGTGATGTCCTTAGATATTGGTTTATTAATGTCTGGTGCCAAAGAACGAGGTGAACTAGAGGCACGTGTAACTAGTTTGATTGATGAAATACAAAGGGCAGGTGATGTTATTCTTATAATTGATGAAGTTCATACTCTTGTGGGCTCGGGTTCTGTTGGAAGAGGAAATAGTGGTTCTGGCCTTGACATTGCTAGCTTACTGAAGCCTGCCCTTGCTAGAGGTCAGCTACAGTGCATTGCTGCTACAACGCTCGATGAACACAGAAAGCACATTGAAAAAGATAAAGCACTTGCTCGTCGTTTTCAGCCTGTTCTTGTAAATGAGCCAAGTCAGGTTGATGCTGTGAAAATACTCATGGGATTGCTTGAAAAGTATGAAGCCCACCATAAGTGCAGGTTTACTACTGAGGCTGTAGATGCAGCCGTGTATTTATCTCAAAGATATATTGCAGACAGATATCTTCCAGATAAAGCTATTGATCTGATTGATGAAGCAGGAAGCCATGCCCGAATAAAAGCTTGCAACAGAAGGAAGCAACGACAAACAGACATACTTTCAAAGCACCCTAATGAATATTGGCGGGAAATTTGGGCAGTTCAAAAATTCCATGAAACTGCACCATCATCGAGAAGCAGTCAACATCGACGTAAACAGGCTAGAAAAACTGGTGATGGTTCTGCTGACACTAGTGTAGATAGCGATGCAGAAGTTGTGCCTTTGCCAACTGTTGCTTCTATTTCAAATGATGATGAATATGATAGCGGGCCTGTTGTTGTTGAGCCAGATGACATAGCAGCTATTGCATCCATGTGGTCAGGAATTCCTGTTGAACAGCTTACTGCAGATGAACAACTTAAGTTGATTGGTCTTGAGAAAAGGCTCCGAACTCGCGTTGTTGGTCAAGATGATGCTGTCAGTGCCATTGCTAGAGCAATAAGAAGAGCCCGTGTAGGCTTGAAGGATCCTGATCGACCCATTGCTACTATGCTTTTTTGTGGTCCAACTGGAGTTGGCAAGACAGAATTGACTAAGGCCTTGGCTGAATTATATTTTGGATCAGAAGCAGCCATGATCAGGCTGGACATGAGTGAATACATGGAACGACATACTGTGAGCAAATTGATTGGGTCACCACCTGGATATGTAGGATATGGTGATGGGGGCACCCTAACTGAGGCTGTAAGACGGAAACCATTTACAATAATATTGCTTGATGAAATTGAGAAAGCCCACCCTGATATTTTCAACATCCTACTCCAAGTGTTTGAGGATGGCCATCTCTCTGATTCCCAGGGTCGAAGAGTATCTTTTAAAAATACCCTCATTATTATGACATCCAATGTTGGATCCACAGCGATTGCAAAGGGTGGAAGTAATAGAATTGGATTTGCCTTTGTAGAAGAGGAGCATGAAGGAAGATATTCAGCCTTAAAAGCATTAGTCATGGAGGAATTGAATGGCTATTTTCGGCCAGAATTATTAAATAGGATTGATGATGTAGTTGTTTTCCGTTCATTAGAAAAGTCCCAGGTACGTGAGATAGTTGATTTGATGTTAACCGAGACTAGAGAACGACTTTCTACTTCTAGACATGGAGTTGGTTTAGAAGTGTCAGAGGCTGTGCTGAACCTCATATGTGAACAAGGTTATGATCGCAGTTATGGTGCAAGGCCTCTAAAGAGAGCACTTGTGCGTTTGGTCGAGGATGTCATAAGTGAAGCATTTCTAGCAGATAACTATCAGGCAGGTGACACTGCTCTTGTTGATCTGGATGCTTCTGGACATCCTTTTGTCACGTGTCATCGGAAACCAAACTGCTATGAGCATGGAATTTGCTTATCCGTCGCAACATGA___GCTTGAATCAGTATGCTTCGCAAAAGTAGCTATTCCCATCAATATTTTTTAGCCGTTATATGTGCATTTCATTCGTCAGAGCCTGTAAAGCTAATTATTCTTACCATTTAATGCTAGCAATTGTACATTTATGTATATATACACATATATATTGTAGAGAGATCTTTCTTGTCTGATTGTTGTTAGACATTATAGTTGAAGGTTCATAATGGTCCAAATTGGGTAAGTATTTATTGGATCACTGATACTGTATCCAAGTTATGTTAAAGCCTGTTTGAGCAATGTGCAAGTGTTGTAAATGGGCTGCTCCCAATAATTTCATCGAGGAGATTTAACTCGTGTTTTTAATTTTGAGCTAATTCTTGAGTCTTACCATTTAATGCATCCTTTGAAGGCCCATTATCATTCC

Fln Alignment:

Contig12989___LEKRLRTRVVGQDDAVSXXXXXXXXXXVGLKDPDRPIATMLFCGPTGVGKTELTKALAELYFGSEAAMIRLDMSEYMERHTVSKLIGSPPGYVGYGDGGTLTEAVRRKPFTIILLDEIEKAHPDIFNILLQVFEDGHLSDSQGRRVSFKNTLIIMTSNVGSTAIAKGGSNRIGFAFVEEEHEGRYSALKALVMEELNGYFRPELLNRIDDVVVFRSLEKSQVREIVDLMLTETRERLSTSRHGVGLEVSEAVLNLICEQGYDRSYGARPLKRALVRLVEDVISEAFLADNYQAGDTALVDLDASGHPFV
D5AEG2_______________MEETLHQRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRG-IGFQLDYDEKDSSYTRIKSLVNEELKQYFRPEFLNRLDEMIVFRQLTKTEVKEIADIMLREVFERLKTKE--IGLQVTERFTDRVVDEGYSPSYGARPLRRAIMRLLEDSLAEKMLAGEIKEGDSAIVDVDGEGNVIV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
854	10		90		0.90298
855	90			10	0.90298
1171	28		71		1.0
1173		71		28	1.0
1175			71	28	1.0
1349		14		85	0.993533
1485	20			80	0.995493
1554	80		20		0.995493
2396		12		87	0.992554
2408	14			85	0.993533
2412	14	85			0.993533
2416	33	66			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain