SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12963

Length: 1302 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12963

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tonoplast intrinsic protein, putative n=1 Tax=Ricinus communis RepID=B9RS20_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G25810.1	" TIP4;1 tonoplast intrinsic protein 4;1 chr2:11012658-11013906 FORWARD LENGTH=249"	58%
RefSeq	Arabidopsis thaliana	NP_180152.1	aquaporin TIP4-1 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002309548.1	aquaporin, MIP family, TIP subfamily [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSL7

Fln msg:

Fln protein: MGKIAVGRVEEATQADSIRAIVAELVCTFLFVFAGVGSTMAVDRLSESSGLTPGAGLAIIALTHAFAVCGLVSAGFHLSGGHINPAVTFALAVGGHITILRSILYWIAQLLGSTIACYLLDFITGGMGTPVHMLAGGMGYIQGVVMEMVLTFSLLFTVYATVVDPKRGPMGVIMAPLCIGLVVGANVMAAGPFSGASMNPARSFGPAFVMWQWRDHWVYWVGPLVGGGLAAALYENFFIIRTYEPLPASL*

Protein Length: 252

Fln nts: ATGGGGATGCACGCAATTTTGCGCTCAAAGGGTTTCCATAGGAATCCCAACCCAGCTCTTTAAACCTGAGATGTGTGCTGCAGAAAAATCATAATTGGAGTGCCATGCCAGCTAGTTAGCCAGCAATTGCTGTATGGCTGTTCATCTCTAGATTGCCAGCCATCTCGGCTATAAGATTGGCTACGCATCTCTGGAAGAGACATTGATGGCAGAGCATGAATAGCTTATATTACTGAAGTAGACTGTAGATCAAGAATTGGGGCTGAAATATTTAGGGCCAAAAGTGATTTATATTAACAGTTCACAAT_-_ATGGGAAAGATTGCAGTAGGACGCGTGGAAGAGGCCACTCAAGCGGATTCTATAAGGGCAATTGTCGCAGAACTCGTCTGCACTTTCCTGTTTGTGTTTGCAGGCGTGGGATCAACCATGGCAGTTGATCGCTTGTCTGAAAGCTCAGGTTTGACACCAGGAGCAGGACTGGCCATCATTGCTCTGACCCATGCATTTGCAGTGTGTGGACTGGTCTCAGCTGGGTTTCATTTGTCGGGAGGACATATTAACCCTGCGGTCACATTTGCATTAGCAGTTGGAGGCCATATCACTATTCTCAGGTCTATTCTGTACTGGATCGCTCAGCTCCTGGGCTCCACAATTGCCTGCTATCTCCTCGATTTCATAACAGGAGGAATGGGAACTCCAGTTCATATGTTGGCCGGTGGAATGGGATATATTCAAGGAGTGGTTATGGAGATGGTCCTGACCTTCTCCTTGCTGTTTACAGTGTATGCAACAGTGGTTGATCCGAAGAGAGGACCAATGGGTGTAATAATGGCGCCTCTGTGCATAGGGCTTGTTGTGGGGGCAAACGTAATGGCGGCAGGGCCATTCTCAGGTGCATCAATGAACCCTGCACGTTCATTTGGGCCGGCGTTTGTTATGTGGCAGTGGAGAGACCATTGGGTATATTGGGTTGGTCCTCTGGTTGGAGGCGGTCTAGCAGCTGCCCTATATGAGAATTTCTTCATCATTCGAACGTACGAGCCTCTCCCCGCCTCGCTTTGA___GGATACCAAGGAACTAATGAAACCTACCAGGGTAGCCTCCTTCATAAAATAACAGCGCGTGTTTGCTTGAGTAAATAAATGGCCCTAAAGTCCCACCATATTCACGGTTAGAACCAGAATGACAGGTGTGAGATCATGCTGTAAATATGTATGTTCCTGGTGTTTTATGTGGTGAAAACTGTGTTAGACTCTCCTCATCATGTACATATATATCTTTTGACTTGCACATATATTTTTGGTT

Fln Alignment:

Contig12963___MGKIAVGRVEEATQADSIRAIVAELVCTFLFVFAGVGSTMAVDRLSESSGLTPGAGLAIIALTHAFAVCGLVSAGFHLSGGHINPAVTFALAVGGHITILRSILYWIAQLLGSTIACYLLDFITGGMGTPVHMLAGGMGYIQGVVMEMVLTFSLLFTVYATVVDPKRGPMGVIMAPLCIGLVVGANVMAAGPFSGASMNPARSFGPAFVMWQWRDHWVYWVGPXXXXXXXXXXYENFFIIRTYEPL
C0PSL7_______________MVKIAVGRVEEATQADSIRATVAELVCTFLFVFAGVGSALTVDKLSESSALTPGAGLVIIALTHTFAVYAMVSAGFHISGGHLNPAVTLGLAVGGHITLLRSILYWIAQLLGSTLACFLLEFITGGMGIPVHTLAGGTGYIEGVVMEMVLTFSLLFTVYATVVDPKRGSMGVLMAPLCVALVVGANIMAGGPFSGASMNPARSFGPAFVMWEWRDHWVYWVGPLVGGGLAGALYENFFIIRTYEPL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
466	75		25		1.0
508		25		75	1.0
532		25		75	1.0
664		10		90	0.90298
681		88		11	0.923564
691	10		90		0.90298
727	77		11		0.968132
751			88	11	0.923564
752	88		11		0.923564
753			11	88	0.923564
776	14			85	0.993533
824	12		87		0.992554
825		12		87	0.992554
827	87			12	0.992554
1095		26	73		1.0
1100	27	72			1.0
1214		40		60	1.0
1278		62		37	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain