SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12954

Length: 1290 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12954

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS-LRR disease resistance protein homologue n=2 Tax=Hordeum vulgare RepID=Q84KC6_HORVU	-	-	3.0e-31	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 87 aas, putative chimeric sequence, your sequence is shorter than subject: 211 - 1071

Fln protein: VVTLAVTLA*RTSKPFTLPLLRAAERLPDSLGVLTSLHPFTCSAATS*GSSQIPSST*RIPKPLNFLAATTTRQPDSLGGLTSLPALLLSGCSHLQRLQVSLGSLTNLQAVDLSDCSHLPSLPDFLGSLISLHTIDLSSCSDMQRRPYSFGNFTNLQTVDLSGCSDLQRLPDSCGNSANLQRIDFFGCSSLQGLPGSFGNLTSRYLSTCS*

Protein Length: 212

Fln nts: CGTCGTGACCTTGGCTGTCACTCTGGCTTGACGAACCTCCAAACCCTTCACTCTTCCGCTGCTACGAGCTGCCGAGAGGCTCCCAGATTCCCTTGGCGTCTTGACGAGTCTCCATCCCTTCACTTGTTCTGCTGCTACCAGCTGAGGCAGCTCCCAGATTCCCTCCTCGACTTGACGAATCCCCAAACCCTTGAATTTTTTGGCTGCTACCACTACGAGGCAACCAGATTCCCTTGGCGGCTTGACAAGCCTACCAGCTCTGCTCTTGTCGGGCTGCTCCCACTTGCAGAGGCTACAAGTCTCCCTCGGCAGCCTGACGAACCTCCAAGCTGTTGACTTATCGGATTGTTCCCATCTGCCGAGTCTCCCAGATTTTCTTGGCAGCTTGATAAGCCTCCACACGATTGACTTGTCTAGTTGCTCCGACATGCAGAGGCGTCCATACTCCTTTGGCAACTTTACTAACCTCCAGACGGTTGATTTGTCCGGCTGCTCCGACTTGCAGAGGCTCCCAGACTCCTGTGGCAACTCAGCGAACCTCCAAAGGATTGACTTCTTCGGCTGCTCCAGTTTGCAAGGGTTACCAGGTTCCTTTGGCAACTTAACGAGTCGTTACTTGTCCACCTGCTCCTAA___ATTCTGCATTTAAAAAGCAAATCGTTGCAAATACTCTCATTCAGTCTGCTGAGGAGCTTGAAGGAATTGGAGCGCAACTTTTGCTACGGATTGAAATGTCTACTCGATTCTATTAGAATGTTGGCTCTCAGTCGAACAATCAGTGTTGAAAATAGAGGGTTGTCAGCGAAGCAACCAGCCATGAAAAAAAATGGAGGGGCAATTGAAACATGTAGCAATTTAAAAGACTCTTCGGAGGTATATCCTATTCTGAAGATGTTCTCCTTAACCTTCAAGATGTCGAAATTAAGAATTGTAATGGTCTGGTAGACTCTAAAGTGGAAGGCTGGTGGCGCATTGAGGAGAGTAGGAGGGCTTTCTGGTCTTTCAAAACTTCAAATGCTGAACACTAGCAGCTGCATAGAATTGGAGGAGCTGCCAAGTCAGCATTTGTATTTTTGAAGGCATTGTGTGCATTTAATTCTGTCCATTTGAAGGCCTTGAAGAACTTACGGAGGTTAGAACATTTGACGAAGCTTCGAAAGCCGAATATTAACTGGTGCATGAATTGGAGGAACTTCCAAGGACTTGTGTATTTTTTTATTTTCAAAGAAAATTTGATGGACACTATGGACTTGATGTATGCTTTTTCAAAGAAAACACAATGGAAAATTTAG

Fln Alignment:

Contig12954___TLPLLRAA--ERLPDSLGVLTSLHPFTCSAATXXXXXXXXXXXXRIPKPLNFLAATTTRQ--PDXXXXXXXXXXXXXXXCSHLQRLQVSLGSLTNLQAVDLSDCSHLPSLPDFLGSLISLHTIDLSSCSDMQRRPYSFGNFTNLQTVDLSGCSDLQRLPDSCGNSANLQRIDFFGCSSLQGLPGSFGNLT
C0PQE2_______________TLDLIECSTLQTLPDSVGNLTGLQTLYLSRCSTLQTLPDSVGNLTGLQTL-YLSGCSTLQTLPDSVGNLTGLQTLYLSGCSTLQTLPDSVGNLTGLQTLNLDRCSTLQTLPDLVGNLKSLQTLDLDGCSTLQTLPDSVGNLTGLQTLNLSGCSTLQTLPDSFGNLTGLQTLNLIGCSTLQTLPDSFGNLT

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
481	25		75		0.996473
514		75		25	0.996473
973		75		25	1.0
1214	10			90	0.90298
1215	90			10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain