SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12950

Length: 981 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12950

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytokinin-regulated kinase 1 [Nicotiana tabacum]	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Protein kinase APK1A	-	-	3.156e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	4.8e-13	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	9.615e-12	-
Sma3		EC:2.7.11.3-	-	7.505e-11	-

Source	Gene names
Sma3	56B23-g2; ABC1041; ACR4; APK1A; AT1G67720; AT2G28970; AT2G28990; AT2G37050; AT4g02010; At1g07570; At1g28390; At1g61590; At2g28970; At2g28990; At2g37050; At3g01300; At3g04690; At3g07070; At3g51550; At3g55950; At3g59420; At4g02010; At5g02290; At5g15080; At5

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	endocytic vesicle	GO:0030139	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	hyaluronic acid binding	GO:0005540	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	cell adhesion	GO:0007155	Biological Process	-
Sma3	regulation of asymmetric cell division	GO:0009786	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	nodulation	GO:0009877	Biological Process	-
Sma3	lateral root formation	GO:0010311	Biological Process	-
Sma3	pollen tube reception	GO:0010483	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	root cap development	GO:0048829	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Link	IPR000538	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	TNFR/CD27/30/40/95 cysteine-rich region	IPR001368	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G55950.1	CCR3, ATCRR3 CRINKLY4 related 3 chr3:20753903-20756347 REVERSE LENGTH=814	61%
RefSeq	Arabidopsis thaliana	NP_191154.1	putative serine/threonine-protein kinase-like protein CCR3 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002325962.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 47 aas, putative chimeric sequence, your sequence is shorter than subject: 262 - 431

Fln protein: LSAFDSELSFLSRLHHKHLVGLVGYCEEEDEEEHLLVYEFMPNGSLYDHLHKTQELNPALNSWPMRIKLALDAARGIEYLHTYAVPPIIHRDIKSSNILLDGSWNARVSDFGLSLMGPNDEDSHLSLMAAGTVGYMDPEYYRMQHLTAKSDVYSFGVVLLELLTGKKAIHKDDGSGGPRNVVDYALPHIAEDDFPTILDPRLPPPRPYEIEAVTFVGYTAVDCVSLEGKDRPSMTEVVGFLEKAFALCAANLSRGSSRGEQ*

Protein Length: 263

Fln nts: ACTCTCGGCCTTCGATTCAGAGCTCTCGTTCCTTTCCCGGCTCCACCACAAGCACCTGGTGGGCCTGGTGGGCTACTGCGAGGAAGAAGACGAGGAAGAACACCTCCTGGTCTACGAATTCATGCCCAATGGTTCCCTATATGACCACCTGCACAAAACCCAGGAGCTCAATCCGGCCCTGAATTCATGGCCAATGCGAATAAAGCTCGCGCTTGACGCCGCAAGAGGAATCGAGTACCTGCACACATATGCCGTCCCGCCCATAATTCACAGAGACATAAAATCCTCCAATATCCTCCTTGACGGCTCCTGGAACGCCCGGGTCTCAGATTTCGGGCTCTCCCTCATGGGCCCCAACGATGAAGACTCGCACCTGTCACTAATGGCCGCCGGAACCGTGGGGTACATGGACCCTGAATATTACAGAATGCAGCATTTGACGGCCAAGAGTGACGTGTACAGCTTCGGCGTCGTTTTGTTGGAATTGTTGACGGGCAAGAAGGCGATACACAAGGACGACGGCAGCGGAGGCCCTCGGAACGTGGTGGACTATGCCCTCCCTCATATTGCGGAGGATGATTTCCCCACCATTTTGGACCCCCGGTTACCTCCCCCACGGCCATATGAGATCGAGGCTGTGACCTTTGTGGGCTACACTGCTGTGGACTGTGTGAGCTTGGAAGGGAAAGACCGGCCTTCCATGACTGAGGTTGTGGGGTTCTTGGAAAAGGCTTTTGCCCTCTGTGCTGCTAATCTTTCCAGGGGGTCTTCCAGAGGCGAGCAATGA___TTATGATTTCCCATTCTTCTATTTATGTAGAAAATGTTGTAAATGCATTCTTTTTGCAATTTAAGTTCCCTAATTCAGGGAGTAAATATAACTCTAATTTTTACGAGCATTGTCACCTCATTCAAAACCATATTTGTATCAGGATATTTTAAATAAATATGTGAAGCAATGTGTATAAAATTGAAGTTTGTAGG

Fln Alignment:

Contig12950___SELSFLSRLHHKHLVGLVGYCXXXXXXXHLLVYEFMPNGSLYDHLHKTQELNPALNSWPMRIKLALDAARGIEYLHTYAVPPIIHRDIKSSNILLDGSWNARVSDFGLSLMGPNDEDSHLSLMAAGTVGYMDPEYYRMQHLTAKSDVYSFGVVLLELLTGKKAIHKDDGSGGPRNVVDYALPHIAED-DFPTILDPRLPPPRPYEIEAVTFVGYTAVDCVSLEGKDRPSMTEVVGFLEKAFAL
B8LKY1_______________AEVNFLGQLRHANLVKLIGYCIEDNQ--RLLVYEYMPRGSLENHLFRKGALPLP---WSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDK-HRSNGEQNLVEWARPYLVDKRKLYRLVDPRL--SGHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLLSL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
749		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain