SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12865

Length: 3162 nt

UniGene Fasta

>sp_v3.0_unigene12865
GCTTTCCCACATAGCTGAACTAATCTATGTGGGAAAGCAGAAAGCTGGGAGACAATTCATAAAGGGTGTGGGCTGTCGCACAACAGACTGTTCTTTCTACAGAGACTGATGATGCTGGACAGGTGGAGTATATATTTGAATGACACAGCAGATGAGATGAGATTTCGCCCTTCCAGTAAAATCCTTTTTTCAATTGATATCGGAGATCGAGATTGATTAATGGATTCCAGAATCCTCAGTAGGTATCTGCGTCGATTCCCCGATCGAAATTGATTAATTGATATGCACATGGAAACTGAGGGTTAAGGATTGGGTTGATTGCTTGCTTCGTGCTACGTCAGGAGGTCGAAATCCAAAGGACAAGGCTTAGGACGAGTTTATATATTGCAGGAGAACATGGTTGTGGGGGCGATTGCAGAGATTGAGGAGGAGAGGAGGAAGATGGATGAGTGGAATTGGCTGGTGATAGTGCCGCCATTCGAGTGCCAATGGCTGGTGGAGGAGGAGCTAAGGTTCAGGGAAGCAGGGCGGGGGTGTATAGCCTTCGAGGCGTACGCGGACAACGATGTGACCGTGGTGCTGAAGGAGGAGGCGGGGAGCAAGCACTGCCACTACAGAAGGGACAACGCGCCTAACTACACGATTGTGCTTGGGAGCCACCGGAACAGTCGCCTGAAGATCGAGGCGGACGGGGAAAGCGTGGTGGACGTAGCGGGGCTCGGGCTCTGCTCCTCGTCGGACTTCCAGAGCTTCTGGATCAGCATTTATGATGGCCTCATAAGCATTGGTAAGGGCGGGGACCCGGGGCACAACGTGGTGTTTCAGTGGCTTGATTCGGAGCCCAAGTGCAAGGTCCAGTACGTGGGTCTCAGCAGTTGGGATAAGCATGTGTGCTATCGGAATATAAGGGTTTTGCCCTCGCCCGCCTGCAGGCCTTCTTGTCAGGAGGGCGGCGGTGGTCTGAGTAGTTTTCTGGAGAATTCGGATTTGGCCGATTTGACTATCCACGTGGGCTCTGAGCGCCGGGCTGTGCCTGCTCATCGGGTTGTTTTGGGTTTGTGCTGCAGTGGGGTGGTGTTGAGCGAGGAAGTGATCAGGCTTCCGTCAGTGGAGTATCCGATTCTTCGTGCTCTGCTTCAGTATTTGTACACCGGGCGAACCCAGGTTTCAGAGTTCCAATTGGAGGCATTGAGTAAACTGAGTGAAGAGTTTGGTGTTCAGTCCTTGGTGGTCCAGTGTGAGCAAATGAAGGATGCACTCAAGGACACGTCTCTGAGGAAGGATCATAAACTGGAATTATTGCATTCCAGTCCTGTTACCTTCTTGCGGAACTGTCCAGCTTTCTCATCCGACATGCCGATTGATGTGCAAAAGCTGGAAAAATTGCTTGAAACTGGTGAATACAGTGACATCAATATTTATATTGAGGGGCATGGTCTGGTCGTCCAAGCACACAAACTCGTTTTGAGTGTCTGGAGTGCTCCTTTTGCCAAGATGTTTACAAATGGGATGAGTGAAAGCAATGCCTCAGAAGTCTGCTTGAGGGATGTTTCCCCTGAAGCATTTTTAGCTATGGTGCACTTCATGTACAGTGGGAAGTTGGATATGGATGAAAAACAGAACTTGGGTTCCTTGCTGCTCCCCCTTATTGTCCTAGCTGATCAGTTTGGAATTCACCTGCTTCAACAAGAATGCTGTGAATGCTTATTTGATTGTATCTCAAAGGATTCAGTAGGTCCAATCCTGCAGGTGGTCACCTCAATGCCTGCATGCAGGCCGCTTGAAGAAGCTTGTGAAGAAATGTTTTCTAAGCATTTTGATTATTGCACTACGGCCAGTGCAGAATTCAAAATGTTAGAAAGGGCCTCATTTATGAAAATACTTCAGCACCCCCATTTGGTAGTGACCTCTGAGGAAAGAGTTCTGGATGCTATTCTAACTTGGGGAACACAAGGAGATGGCCTTCATGGTTGGGAAGCAGTAAATCAGCAGCTAGAGGAGTGCAGTCCCGAGACACTCTTTGCAGAAAGGCTAGAACCTTTAAATGAATTGCTTGTTCTTGTTCGTTTTCCTCTAATGCCACTTCCTTCACTTCAAAAGCTGGAGCAGAGCAACCTAAGCAAGCAAATTCCAGTCTTTCGACAGCTGATAATGGAGGTGCTTCAGTATCTCGGGACAGATGCAAGCAATGCAGCAAATGAACAGAAGCACCTTTCGAAGTCATTTGGCATAAGCACTCAAGGGCAGCTAGGTAATTGTATCAGGTTCCATCCAAGACCATCGAGCTTTAAGAAACTCTTGTACATATGTGACGGTGATCATAATGGAGTAATTCATTATGCTGGCACTTCATATGGTGAACACCCATGGATGAATCCTGTGCTGGCAAAGAATATTTCTGTGACTGCAAGTAGCCCACTTTCACGGTACACTGACGCTAAAGTACTGGTCTCTAGGAGATACCAGGCTACCTCTTTTGCTGGACCTTGTATTGAGGATGGGAAGATATCTGCATGGTGGAAAGTTGACTTAGGGGAAGGCCACCAGCTTATGTGTAATTACTATACATTAAGACAGGATACCTCTATGGGTTACATGCGGTCATGGAGTTTGCAGGGATCATTGGATGGGGAACATTGGACAGACTTGAGAATACATAAGAATGATCAGAGTATTTGCAGGCCTGGGCAGTTTGCATCCTGGCCTATACACGGTGCCACTGCTTATCTTCCTTTCCAGTGTTTCAGAGTTGTACTGACAGGGCCCACTACGTGTCAGTCAAATCCATGGAATCTCTGCATTTGCTACATAGAATTATATGGCTATTTTAAGTGATTGTTGGGTTGCATCCCACTCATAATAACGTCAAGTCTTTTTGCGTTTGTAAAGCCTTTCGTAGACTATAATGTGTTCGGGCACTTATGCACGTGAATCCCATGCCATGTGTATTGAAGTAGTTGCGTTTTGTAGAAATTTGGTATATGTTCTAATCCGGAAACGTGCTGGAGCACACATGTGAGGAAGCATTGCATTTTTCTTCCGTGAAGTCTAATAAGGCCAACTTGATGGGTCATTATTTAGACACGCATCGTGTTATTTCTGAATGTTGCCATAAATTATTGAAATCAAGTTATTGTTTTGCTGGCTATCAGTTGCTTGTTA

Ace file of the UniGene sp_v3.0_unigene12865

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Methyltransf_FA multi-domain protein	-	-	5.0e-21	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%

Source	Gene names
Sma3	AT2G30600; At2g30600; At2g30610; B1036C05.9; CHLREDRAFT_119607; GSVIVT00002879001; Os05g0345500; OsI_19541; OsJ_18148; PHYPADRAFT_50218; POPTRDRAFT_818862; POPTRDRAFT_829998; RCOM_1601000;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	cell adhesion	GO:0007155	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Coagulation factor 5/8 C-terminal type domain	IPR000421	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/Kelch-associated	IPR011705	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G30600.5	BTB/POZ domain-containing protein chr2:13037410-13041475 FORWARD LENGTH=855	49%
RefSeq	Arabidopsis thaliana	NP_850151.1	BTB/POZ domain-containing protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002307790.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LML1

Fln msg: your sequence is longer than subject: 813 - 430

Fln protein: MVVGAIAEIEEERRKMDEWNWLVIVPPFECQWLVEEELRFREAGRGCIAFEAYADNDVTVVLKEEAGSKHCHYRRDNAPNYTIVLGSHRNSRLKIEADGESVVDVAGLGLCSSSDFQSFWISIYDGLISIGKGGDPGHNVVFQWLDSEPKCKVQYVGLSSWDKHVCYRNIRVLPSPACRPSCQEGGGGLSSFLENSDLADLTIHVGSERRAVPAHRVVLGLCCSGVVLSEEVIRLPSVEYPILRALLQYLYTGRTQVSEFQLEALSKLSEEFGVQSLVVQCEQMKDALKDTSLRKDHKLELLHSSPVTFLRNCPAFSSDMPIDVQKLEKLLETGEYSDINIYIEGHGLVVQAHKLVLSVWSAPFAKMFTNGMSESNASEVCLRDVSPEAFLAMVHFMYSGKLDMDEKQNLGSLLLPLIVLADQFGIHLLQQECCECLFDCISKDSVGPILQVVTSMPACRPLEEACEEMFSKHFDYCTTASAEFKMLERASFMKILQHPHLVVTSEERVLDAILTWGTQGDGLHGWEAVNQQLEECSPETLFAERLEPLNELLVLVRFPLMPLPSLQKLEQSNLSKQIPVFRQLIMEVLQYLGTDASNAANEQKHLSKSFGISTQGQLGNCIRFHPRPSSFKKLLYICDGDHNGVIHYAGTSYGEHPWMNPVLAKNISVTASSPLSRYTDAKVLVSRRYQATSFAGPCIEDGKISAWWKVDLGEGHQLMCNYYTLRQDTSMGYMRSWSLQGSLDGEHWTDLRIHKNDQSICRPGQFASWPIHGATAYLPFQCFRVVLTGPTTCQSNPWNLCICYIELYGYFK*

Protein Length: 814

Fln nts: GCTTTCCCACATAGCTGAACTAATCTATGTGGGAAAGCAGAAAGCTGGGAGACAATTCATAAAGGGTGTGGGCTGTCGCACAACAGACTGTTCTTTCTACAGAGACTGATGATGCTGGACAGGTGGAGTATATATTTGAATGACACAGCAGATGAGATGAGATTTCGCCCTTCCAGTAAAATCCTTTTTTCAATTGATATCGGAGATCGAGATTGATTAATGGATTCCAGAATCCTCAGTAGGTATCTGCGTCGATTCCCCGATCGAAATTGATTAATTGATATGCACATGGAAACTGAGGGTTAAGGATTGGGTTGATTGCTTGCTTCGTGCTACGTCAGGAGGTCGAAATCCAAAGGACAAGGCTTAGGACGAGTTTATATATTGCAGGAGAAC_-_ATGGTTGTGGGGGCGATTGCAGAGATTGAGGAGGAGAGGAGGAAGATGGATGAGTGGAATTGGCTGGTGATAGTGCCGCCATTCGAGTGCCAATGGCTGGTGGAGGAGGAGCTAAGGTTCAGGGAAGCAGGGCGGGGGTGTATAGCCTTCGAGGCGTACGCGGACAACGATGTGACCGTGGTGCTGAAGGAGGAGGCGGGGAGCAAGCACTGCCACTACAGAAGGGACAACGCGCCTAACTACACGATTGTGCTTGGGAGCCACCGGAACAGTCGCCTGAAGATCGAGGCGGACGGGGAAAGCGTGGTGGACGTAGCGGGGCTCGGGCTCTGCTCCTCGTCGGACTTCCAGAGCTTCTGGATCAGCATTTATGATGGCCTCATAAGCATTGGTAAGGGCGGGGACCCGGGGCACAACGTGGTGTTTCAGTGGCTTGATTCGGAGCCCAAGTGCAAGGTCCAGTACGTGGGTCTCAGCAGTTGGGATAAGCATGTGTGCTATCGGAATATAAGGGTTTTGCCCTCGCCCGCCTGCAGGCCTTCTTGTCAGGAGGGCGGCGGTGGTCTGAGTAGTTTTCTGGAGAATTCGGATTTGGCCGATTTGACTATCCACGTGGGCTCTGAGCGCCGGGCTGTGCCTGCTCATCGGGTTGTTTTGGGTTTGTGCTGCAGTGGGGTGGTGTTGAGCGAGGAAGTGATCAGGCTTCCGTCAGTGGAGTATCCGATTCTTCGTGCTCTGCTTCAGTATTTGTACACCGGGCGAACCCAGGTTTCAGAGTTCCAATTGGAGGCATTGAGTAAACTGAGTGAAGAGTTTGGTGTTCAGTCCTTGGTGGTCCAGTGTGAGCAAATGAAGGATGCACTCAAGGACACGTCTCTGAGGAAGGATCATAAACTGGAATTATTGCATTCCAGTCCTGTTACCTTCTTGCGGAACTGTCCAGCTTTCTCATCCGACATGCCGATTGATGTGCAAAAGCTGGAAAAATTGCTTGAAACTGGTGAATACAGTGACATCAATATTTATATTGAGGGGCATGGTCTGGTCGTCCAAGCACACAAACTCGTTTTGAGTGTCTGGAGTGCTCCTTTTGCCAAGATGTTTACAAATGGGATGAGTGAAAGCAATGCCTCAGAAGTCTGCTTGAGGGATGTTTCCCCTGAAGCATTTTTAGCTATGGTGCACTTCATGTACAGTGGGAAGTTGGATATGGATGAAAAACAGAACTTGGGTTCCTTGCTGCTCCCCCTTATTGTCCTAGCTGATCAGTTTGGAATTCACCTGCTTCAACAAGAATGCTGTGAATGCTTATTTGATTGTATCTCAAAGGATTCAGTAGGTCCAATCCTGCAGGTGGTCACCTCAATGCCTGCATGCAGGCCGCTTGAAGAAGCTTGTGAAGAAATGTTTTCTAAGCATTTTGATTATTGCACTACGGCCAGTGCAGAATTCAAAATGTTAGAAAGGGCCTCATTTATGAAAATACTTCAGCACCCCCATTTGGTAGTGACCTCTGAGGAAAGAGTTCTGGATGCTATTCTAACTTGGGGAACACAAGGAGATGGCCTTCATGGTTGGGAAGCAGTAAATCAGCAGCTAGAGGAGTGCAGTCCCGAGACACTCTTTGCAGAAAGGCTAGAACCTTTAAATGAATTGCTTGTTCTTGTTCGTTTTCCTCTAATGCCACTTCCTTCACTTCAAAAGCTGGAGCAGAGCAACCTAAGCAAGCAAATTCCAGTCTTTCGACAGCTGATAATGGAGGTGCTTCAGTATCTCGGGACAGATGCAAGCAATGCAGCAAATGAACAGAAGCACCTTTCGAAGTCATTTGGCATAAGCACTCAAGGGCAGCTAGGTAATTGTATCAGGTTCCATCCAAGACCATCGAGCTTTAAGAAACTCTTGTACATATGTGACGGTGATCATAATGGAGTAATTCATTATGCTGGCACTTCATATGGTGAACACCCATGGATGAATCCTGTGCTGGCAAAGAATATTTCTGTGACTGCAAGTAGCCCACTTTCACGGTACACTGACGCTAAAGTACTGGTCTCTAGGAGATACCAGGCTACCTCTTTTGCTGGACCTTGTATTGAGGATGGGAAGATATCTGCATGGTGGAAAGTTGACTTAGGGGAAGGCCACCAGCTTATGTGTAATTACTATACATTAAGACAGGATACCTCTATGGGTTACATGCGGTCATGGAGTTTGCAGGGATCATTGGATGGGGAACATTGGACAGACTTGAGAATACATAAGAATGATCAGAGTATTTGCAGGCCTGGGCAGTTTGCATCCTGGCCTATACACGGTGCCACTGCTTATCTTCCTTTCCAGTGTTTCAGAGTTGTACTGACAGGGCCCACTACGTGTCAGTCAAATCCATGGAATCTCTGCATTTGCTACATAGAATTATATGGCTATTTTAAGTGA___TTGTTGGGTTGCATCCCACTCATAATAACGTCAAGTCTTTTTGCGTTTGTAAAGCCTTTCGTAGACTATAATGTGTTCGGGCACTTATGCACGTGAATCCCATGCCATGTGTATTGAAGTAGTTGCGTTTTGTAGAAATTTGGTATATGTTCTAATCCGGAAACGTGCTGGAGCACACATGTGAGGAAGCATTGCATTTTTCTTCCGTGAAGTCTAATAAGGCCAACTTGATGGGTCATTATTTAGACACGCATCGTGTTATTTCTGAATGTTGCCATAAATTATTGAAATCAAGTTATTGTTTTGCTGGCTATCAGTTGCTTGTTA

Fln Alignment:

Contig12865___VLSVWSAPFAKMFTNGMSESNASEVCLRDVSPE--AFLAMVHFMYSGKLDMDEKQNLGSLLLPLIVLADQFGIHLLQQECCECLFDC-ISKDSVGPILQVVTSM---PACRPLEEACEEMFSKHFDYCTTASAEFKMLERASFMKILQHPHLVVTSEERVLDAILTWGTQGDGLHGWEAVNQQLEECSPETLFAERLEPLNELL-VLVRFPLMPLPSLQKLEQSN
B8LML1_______________ILAAKSPFFYKLFSNGMRESEQRDVTLRISASEEAALMELLNFMYSATV----TTNTASALLDVLMAADKFEVASCMRHCSRLLRNLPMTPESALLYLELPSSVLMADAVQPLTDAAKQYLAKQFKDITKFQDDVMALPLAGVEAVLSSDELQVASEDAVYDFVLKWA---------RAHYPKME---------ERREILGSRLGRLIRFPNMSSRKLKKVLTCN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1007	66			33	0.997452
1008		66		33	0.997452
2228		10		90	0.90298
2236	90		10		0.90298
2237	90			10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain