SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12863

Length: 1143 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12863

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter I family member 17 n=3 Tax=Arabidopsis RepID=AB17I_ARATH	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%

Source	Gene names
Sma3	At1g67940; GSVIVT00031325001; NAP3; Os06g0695800; OsI_24312; OsI_33610; OsJ_22488; P0622F03.26; PHYPADRAFT_134304; POPTRDRAFT_1107359; RCOM_1381510; STAR1; T23K23.21; VITISV_010974; ppabci1;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	phosphate ion transport	GO:0006817	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Binding-protein-dependent transport systems inner membrane component	IPR000515	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Conserved hypothetical protein CHP00725	IPR005268	-	-
Sma3	Phosphate transport system permease protein 1	IPR005670	-	-
Sma3	Bacterial extracellular solute-binding, family 1	IPR006059	-	-
Sma3	Phosphoenolpyruvate carboxykinase, GTP-utilising	IPR008209	-	-
Sma3	Phosphoenolpyruvate carboxykinase, N-terminal	IPR008210	-	-
Sma3	Phosphoenolpyruvate carboxykinase, C-terminal	IPR013035	-	-
Sma3	Transport-associated OB, type 2	IPR013611	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site	IPR018091	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G67940.1	ATNAP3, AtSTAR1, NAP3 non-intrinsic ABC protein 3 chr1:25477805-25478667 FORWARD LENGTH=263	67%
RefSeq	Arabidopsis thaliana	NP_176961.1	ABC transporter I family member 17 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002325227.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADF3

Fln msg:

Fln protein: MELNDFGDEQQLLRSIDEDDLEEGVVGDGDRHPKIRVKNLWRTTEQGTSLLSGVSVDIWKGTVVGVIGPSGSGKSTLLRALNRLWEPSVDSVFLDNDDITNLDVLALRRRVGMLFQTPALFEGSVADNIRYGPALRGEKLSDEKVVEYLGLADLDSSLAARAASGLSVGQAQRVALARALANNPEVLLLDEPTSALDPISTEHIEESIGKLRREKGMTIIMVSHSIKQIQRIADLVFVLVDGQIVDSLKPDQLCNANHPTARRFLELSS*

Protein Length: 271

Fln nts: GGACACGAAAAGCTTTGAGTAGACCACATGTAACCTGCCCTTCGACTATTTAGCAGAATTTGCCTCTTGGATTGCTGATTGCAGGTGGCTGACTCTGGTTGTGTTGCAGATCAATTCTATCC_-_ATGGAACTCAATGATTTTGGAGATGAGCAGCAGCTGCTGCGCAGCATCGATGAGGACGACCTGGAGGAAGGGGTTGTGGGCGATGGTGATCGCCATCCGAAGATAAGGGTGAAAAATCTTTGGAGGACGACGGAGCAGGGGACGAGCCTTCTGTCGGGAGTTTCGGTCGACATATGGAAGGGGACGGTGGTGGGAGTAATAGGGCCGAGCGGGAGCGGAAAGTCGACATTGCTGAGGGCACTGAACAGGCTCTGGGAACCGTCCGTCGATTCCGTCTTCCTCGACAATGACGACATCACTAACCTCGACGTGCTCGCCCTCCGACGCCGTGTGGGCATGCTCTTCCAGACGCCAGCCCTCTTCGAAGGAAGCGTCGCGGATAACATAAGGTACGGGCCGGCGCTCCGCGGGGAGAAATTGTCGGACGAGAAGGTGGTTGAGTATTTGGGCTTGGCGGATTTGGACTCCTCGCTGGCCGCCAGAGCTGCTAGCGGTTTGTCCGTGGGGCAGGCGCAGCGGGTGGCCCTGGCCAGGGCTCTGGCCAACAACCCCGAGGTACTACTGCTGGACGAGCCGACGAGCGCCCTGGATCCCATATCGACTGAGCACATCGAGGAGTCGATCGGGAAGCTGAGGAGGGAGAAGGGGATGACAATTATCATGGTTTCGCACAGCATCAAACAGATTCAAAGAATCGCCGACCTCGTCTTTGTGTTGGTCGATGGGCAGATTGTGGACTCTCTGAAACCCGACCAGCTCTGCAATGCAAACCATCCCACGGCTCGCAGGTTTCTGGAATTGAGCTCCTAA___TTTTCATGAATTCTGCTGGTGGACGACATGGCGCGACTGGGAATTTTCTGTTAAGGTGTCGAGTCAGAAAGCATTTGCTTTTCCTGCGCGGCAATGTCAAAAGCATTTCCAATTTCTTTCCTTTAATGGCCATATAATGGAGTGTAAGATAAGCATCCGCGCTTTAAAGGTTGTAAAGTGTGGAATATTTAATTTTATTATTATTATCAAA

Fln Alignment:

Contig12863___HPKIRVKNLWRTTEQGTSLLSGVSVDIWKGTVVGVIGPSGSGKSTLLRALNRLWEPSVDSVFLDNDDITNLDVLALRRRVGMLFQTPALFEGSVADNIRYGPALRGEKLSDEKVVEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEVLLLDEPTSALDPISTEHIEESIGKLRREKGMTIIMVSHSIKQIQRIADLVFVLVDGQIVDSLKPDQLCNANHPTAR
D5ADF3_______________HPKMSVRDLRRKSEEGRSLLSGVSVDIWKGTVVGVIGPSGSGKSTFLRALNRLWEPSADSVFLDYHDITKLDVLALRRRVGMLFQTPALFDGNVADNIKYGPALRGLKLSDEEVSKYLGWADLESSLASRSVGGLSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQHIEESIGKLKRGKGMTIIMVSHSVKQIQRIADVVFLLVDGQIVETLKPDQLSNANHPMAR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
971			60	40	1.0
1094	40	60			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1127	1139	TTA TTA TTA TTA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain