SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12842

Length: 2076 nt

UniGene Fasta

>sp_v3.0_unigene12842
CAAAGACCTCTGTTTCCAACCGTGGGAAATAGTCAGAGATCATTCCACATTAAATTGAATCACAAACAAATCTGAAAACGCCAACTACTCCACACGAATTTCGGGGCATTCACACGTGTCAGTAATTTGATGCCTCCAATCCCCGATAGTCAATAAGAATTGTCTATGCAGCGACGGAGTCATAAAAATTCTCCGCGGTGATGTAAAATTTCGGTGGGACAACAAGCTCAAAGAGTACAGGCAGGGAAATATTATTCAACATTCAGATACCCACAACAGCTTAAACAGCGCCAGGGGTCTATTAACCACAGATCCTTCCGAGCCCGATATAAATCCTCATCCCATGTGACCGTAGGCCGAGCAGGGTTGCCTCCGAGGGCATTTGAGTGGGCACTTTCTCGCTCAAGATGACCGGGGAGCTGGAATTTCCGAAATCATTAGTAGGGCGTTGAATTGACGGATTTGATTCACTGTATGCGTTTGCTTATAATAAGTTTGGTGTTTGGGAGTCGTTCCATTGCTGAGATTGAGGTACCCAATGGCCACCTACAATGAAGGTTATATCCTTTTGTTTGAATAATAAAGGGTGAAAGCCTAAGTCATTCAACAAAGATGTGAAAAGATATAGTGGTGATTTGACTTTCGAGAATCAGACACTAGGGTGTAGTTTTGCAAATTATCTTGAATTGCAACATGTCTCAGGGAAGTGACTGCAGGGAGATATCCGAATTAGGTTCTTTAGATTCGGATATCACCATTAATAGGGGTGATAGAGACATTGATTCCCCAACTAAATCTACAGCTGCATCTTCTGGTAAAGGTGGTATATCTCTGACAAATGGTGTACATGAGCTTCTTGACTGCCCTATCTGTAGTAACTCTATGTACCCTCCTATTCACCAGTGTCCAAATGGTCATACTATTTGTTCAAGCTGCAAGTTGAGAGTGCACAACCGTTGCCCCACTTGCAGACATGAACTGGGGAATATAAGATGCTTGGCTCTTGAAAAGGTTGCAGAATCTCTGGAACTTCCTTGCAGATATCAAAAGCTTGGTTGTCACGACATATTCCCATATTATAGCAAGCTCAAGCATGAACAACAATGCATGTTCAGGCCTTACAGTTGCCCTTATGCAGGTTCTGAATGCTCAGTTACTGGGGACATTCCAGCGCTTGTGACTCACTTGAGAGATGATCACAAGGTGGACATGCACAATGGCTGCACCTTCAATCATCGATATGTAAAACCTAATCCTCAGGAGGTGGAGAATGCAACATGGATGCTGACGGTATTCAACTGTTTTGGTCAACAATTCTGTCTTCACTTTGAGGCATTCCAGCTTGGAATGGCCCCTGTGTATATGGCCTTTTTGCGCTTTATGGGTGATGATAATGAAGCAAAAAATTTTGGCTACAGTCTTGAAGTGGGGGCAAATGGACGAAAGCTGTGTTGGCAAGGAATACCAAGAAGCATTCGCGACAGCCATAAGAAAGTCCGGGACAGTCATGATGGTTTGATTATTCAGAGGAATATGGCCCTTTTTTTCTCTGGTGGTGACAGGCAAGAGCTGAAACTGAGGGTCACAGGCCGTATATGGAAAGAACAGAGATGATGCTACCGTATATGGAAAGAACAGAGATGGTGCTATGGAATTGTCTTATTTGTAAATCCTACTAGATAGTGGGTCCATGACTCATTGTAGTCTAATCTACCTCGAATTTGGAGTAAAATTATTAATGAAGGGTTTGATGTGTTAATCTATATTGAGTCTGCAGGTGATGGAAGCATTTGGTGTTCGCATGCTCAAGTCTGATGCAAAAATGTAGTGTTGTGGAGCATACGCATTTCAATGTGTGTACCTTTTAATACTTTGTTCTGCCTTTTTGGAACTGCCATGTATGAGGATTTAGAGGACAAGGGGAATGGTGCTGTTTATGTCATATGTCTTAAGAAAATCTGTGACCATATTACTGTTGTGGAGATCATGACATTTGTTTCTTAACTTTTGCTATCATGGTAAGTGAAGCTTATTTAAATTCGAGGTTCTAAATGGGAGACAATTGTATTCATTATT

Ace file of the UniGene sp_v3.0_unigene12842

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: SINA2p isoform 2 [Vitis vinifera] ref\|XP_002280243.1\| PREDICTED: SINA2p isoform 1 [Vitis vinifera] emb\|CAB40578.1\| SINA2p [Vitis vinifera] emb\|CBI29998.3\| unnamed protein product [Vitis vinifera]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Seven-in-absentia protein, sina	IPR004162	-	-
Sma3	Seven-in-absentia protein, TRAF-like domain	IPR018121	-	-
Sma3	Seven In Absentia Homolog-type	IPR013323	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, SIAH-type	IPR013010	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G58040.1	SINAT2 seven in absentia of Arabidopsis 2 chr3:21489612-21491085 FORWARD LENGTH=308	78%
RefSeq	Arabidopsis thaliana	NP_191363.1	E3 ubiquitin-protein ligase SINAT2 [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002308357.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV72

Fln msg:

Fln protein: MSQGSDCREISELGSLDSDITINRGDRDIDSPTKSTAASSGKGGISLTNGVHELLDCPICSNSMYPPIHQCPNGHTICSSCKLRVHNRCPTCRHELGNIRCLALEKVAESLELPCRYQKLGCHDIFPYYSKLKHEQQCMFRPYSCPYAGSECSVTGDIPALVTHLRDDHKVDMHNGCTFNHRYVKPNPQEVENATWMLTVFNCFGQQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKNFGYSLEVGANGRKLCWQGIPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRQELKLRVTGRIWKEQR*

Protein Length: 308

Fln nts: CAAAGACCTCTGTTTCCAACCGTGGGAAATAGTCAGAGATCATTCCACATTAAATTGAATCACAAACAAATCTGAAAACGCCAACTACTCCACACGAATTTCGGGGCATTCACACGTGTCAGTAATTTGATGCCTCCAATCCCCGATAGTCAATAAGAATTGTCTATGCAGCGACGGAGTCATAAAAATTCTCCGCGGTGATGTAAAATTTCGGTGGGACAACAAGCTCAAAGAGTACAGGCAGGGAAATATTATTCAACATTCAGATACCCACAACAGCTTAAACAGCGCCAGGGGTCTATTAACCACAGATCCTTCCGAGCCCGATATAAATCCTCATCCCATGTGACCGTAGGCCGAGCAGGGTTGCCTCCGAGGGCATTTGAGTGGGCACTTTCTCGCTCAAGATGACCGGGGAGCTGGAATTTCCGAAATCATTAGTAGGGCGTTGAATTGACGGATTTGATTCACTGTATGCGTTTGCTTATAATAAGTTTGGTGTTTGGGAGTCGTTCCATTGCTGAGATTGAGGTACCCAATGGCCACCTACAATGAAGGTTATATCCTTTTGTTTGAATAATAAAGGGTGAAAGCCTAAGTCATTCAACAAAGATGTGAAAAGATATAGTGGTGATTTGACTTTCGAGAATCAGACACTAGGGTGTAGTTTTGCAAATTATCTTGAATTGCAAC_-_ATGTCTCAGGGAAGTGACTGCAGGGAGATATCCGAATTAGGTTCTTTAGATTCGGATATCACCATTAATAGGGGTGATAGAGACATTGATTCCCCAACTAAATCTACAGCTGCATCTTCTGGTAAAGGTGGTATATCTCTGACAAATGGTGTACATGAGCTTCTTGACTGCCCTATCTGTAGTAACTCTATGTACCCTCCTATTCACCAGTGTCCAAATGGTCATACTATTTGTTCAAGCTGCAAGTTGAGAGTGCACAACCGTTGCCCCACTTGCAGACATGAACTGGGGAATATAAGATGCTTGGCTCTTGAAAAGGTTGCAGAATCTCTGGAACTTCCTTGCAGATATCAAAAGCTTGGTTGTCACGACATATTCCCATATTATAGCAAGCTCAAGCATGAACAACAATGCATGTTCAGGCCTTACAGTTGCCCTTATGCAGGTTCTGAATGCTCAGTTACTGGGGACATTCCAGCGCTTGTGACTCACTTGAGAGATGATCACAAGGTGGACATGCACAATGGCTGCACCTTCAATCATCGATATGTAAAACCTAATCCTCAGGAGGTGGAGAATGCAACATGGATGCTGACGGTATTCAACTGTTTTGGTCAACAATTCTGTCTTCACTTTGAGGCATTCCAGCTTGGAATGGCCCCTGTGTATATGGCCTTTTTGCGCTTTATGGGTGATGATAATGAAGCAAAAAATTTTGGCTACAGTCTTGAAGTGGGGGCAAATGGACGAAAGCTGTGTTGGCAAGGAATACCAAGAAGCATTCGCGACAGCCATAAGAAAGTCCGGGACAGTCATGATGGTTTGATTATTCAGAGGAATATGGCCCTTTTTTTCTCTGGTGGTGACAGGCAAGAGCTGAAACTGAGGGTCACAGGCCGTATATGGAAAGAACAGAGATGA___TGCTACCGTATATGGAAAGAACAGAGATGGTGCTATGGAATTGTCTTATTTGTAAATCCTACTAGATAGTGGGTCCATGACTCATTGTAGTCTAATCTACCTCGAATTTGGAGTAAAATTATTAATGAAGGGTTTGATGTGTTAATCTATATTGAGTCTGCAGGTGATGGAAGCATTTGGTGTTCGCATGCTCAAGTCTGATGCAAAAATGTAGTGTTGTGGAGCATACGCATTTCAATGTGTGTACCTTTTAATACTTTGTTCTGCCTTTTTGGAACTGCCATGTATGAGGATTTAGAGGACAAGGGGAATGGTGCTGTTTATGTCATATGTCTTAAGAAAATCTGTGACCATATTACTGTTGTGGAGATCATGACATTTGTTTCTTAACTTTTGCTATCATGGTAAGTGAAGCTTATTTAAATTCGAGGTTCTAAATGGGAGACAATTGTATTCATTATT

Fln Alignment:

Contig12842___MSQGSDCREISELGSLDSDITINRGDRDIDSPTKSTAASSGKGGISLTNGVHELLDCPICSNSMYPPIHQCPNGHTICSSCKLRVHNRCPTCRHELGNIRCLALEKVAESLELPCRYQKLGCHDIFPYYSKLKHEQQCMFRPYSCPYAGSECSVTGDIPALVTHLRDDHKVDMHNGCTFNHRYVKPNPQEVENATWMLTVFNCFGQQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKNFGYSLEVGANGRKLCWQGIPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRQELKLRVTGRIWKEQR
A9NV72_______________MSQGSDCTEISELGTLDSVIGIARGDIDIVSPPKASTASSGKGGISLTNGVHELLDCPICSNSMYPPIHQCPNGHTICSSCKLRVHNRCPTCRHELGNIRCLALEKVAESLELPCRYQKLGCHDIFPYYSKLKHEQQCMFRPYSCPYAGSECSVTGDIPALVTHLRDDHKVDMHNGCTFNHRYVKPNPQEVENATWMLTVFNCFGQQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKNFGYSLEVGANGRKLCWQGIPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRQELKLRVTGRIWKEQR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1561	83			16	0.994512
1635	88		11		0.923564
1809	85		15		1.0
1819	89	10			0.999919
2035		11		88	0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain