SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12814

Length: 2649 nt

UniGene Fasta

>sp_v3.0_unigene12814
GTCCCCAGAAGCAAAAAGTTCGCAGCTTTCGTTCTCTACAGGAAATCCTGGCAATTAGGGCAGAATACAGAGACTTTGGGCAGTATGGGATATTTTTCTCAGGGGAGTTTCTTAATTCAAGCACGGTCATTCATTTCACGACCACCCGAGTAATCCACATATCTGAGAGATGCAAGCTGCGCTTCTGGGGAATTTACCTCGTGACCTTGGCAATTGGCACTGATAGAACGTTCGTGTGGAACTAGACTTTAAAAATGTCGTCTGGAGGGTTCTTGAATGCTCAGTTATCCAAGAAGACATCCATTTTTGGGATGAAACTCTGGGTCCTGATTGGTTTGGCTGTTGGAACATTCATTTTCTTAATTCTCTTTATGTTATCTCTTTGGCTTGGTTCTCGGAGAAAGTCGAGGAGAATACTAGAAAAGCTGCCCATTAACCAGATCCCAAAAGTTTCAAAGGAGATAAAAGAAGTAAAGGTTGATAGAAAAGGGATTAACAATCCTCCCCAAGGTGATGCAATTAGCTTCACTAATCAGGGCAATTCCAGCAAGAAAAATTCGGACAAAGTTTTTGTGCCCGTGGGGGTAAAGGGGTTTTCTGATGCAAAGAAGAGTAGTCCAGGGGGTTCCTCTCTTCAACAGAAGGGAGGAGTCTCACAATCAGTAGACGGGGGAAGCTCAGAGGCACATTCTATTTATAGAGGCTCCTCATCTTTTGCAACGAATACAGCTTCACCGATGAGTGGTATGCCTGAAGTCTCATATCTTGGATGGGGTTATTGGTTTACTTTAAGAGATCTAGAAATTGCCACAGGTTATTTTGCAAAGGAAAACGTACTTGGTGAAGGTGGTTATGGAATTGTCTACAAGGGTCAGCTTGCAAATGGAACTATAGTTGCAGTTAAGAACCTATTTAACAATTTAGGCCAAGCAGAGAAAGAGTTCAGGGTGGAAGTGGAGGCCATCGGCCGTGTCCGACATAAAAATCTTGTACGGTTGCTTGGCTATTGTGTAGAAGGAACTCACAGGATATTGGTATATGAGTACGTTAATAATGGCAATTTGGAGCAATGGCTTCACGGAGCTATGAGGCAATGGGGCTTTCTGACTTGGGAGGCCCGTATGAAAATTATCTTTGGGACTGCAAAAGCATTGGCATATTTGCATGAGGCGCTAGAACCAAAGGTTGTTCACAGGGATATTAAATCAAGCAACATCTTGATAGATCATGAATTCAATGCAAAGGTTTCTGATTTTGGTTTAGCAAAGCTTCTTGGTTCAGGAAAGAGCCATGTTACAACGAGAGTAATGGGTACATTTGGATATGTTGCTCCAGAGTATGCAAATACAGGGATGTTGAATGAAAGAAGTGATGTCTACAGTTTTGGGGTCCTCCTCCTAGAGGCTATCACTGGACGAGAGCCAGTTGACTATGGTAGACCTGCAGGAGAGGTGAACCTTGTTGATTGGTTAAAGATGATGGTAGGGAACAGACGTTCTGAAGAAGTTCTAGATCCAAATATGGAAGTAAAACCATCTACACGAGCTCTCAAGAAGGCACTTTTGGTGGCGCTAAGATGTGTTGATCCGGATGCAGAAAAGAGGCCAAAGATGGGCCAGGTTGTGCACATGCATGAAGCAGATGAATTGCCATTGCGTGAGAATCGAAGAGTCAGAGCATACCGGGCTACACACATAGAAGCTGGGACTCAAGATAGAACTTACCGATTTCCAAAAGGCAGCCCTGGTTCCAGAGCTGGAGGTTCAAAAGCACAGCAATGATTTGTGGACAACACAGATGATTGAGGTTCAAACAAAAATGGTCAGAAAATATAAATGATTTCAGGCATGGTATCATGCTTGGTTTCCAGGATTTTATCTTTTCAATTGAATTCTGTTAAAATCTTTAGAACTCTTCAAGAAGCAAGACGATTGATAGCTATTAGCCAATGTTTCTTGCATTCTTATACTTTTCACATGAGAAGTAGCCACTACTTATAGAATACTATAAAGATACGATGATATTTCGACCCAAACTGGACGGTTTATTGGTCTAAAGAAAGTCCACTAGAAACCATATGGTCAGCTTTTCCAAATGCTGGAATCAAGCAAAGCTTCGTGTGACATAAAGGGAAAAGGACGGGCAAGCCTTCAAGATTCCTATGATTTAGGCAAAAAGTCAGTGGGACTGGCAGATTAAGCAGGCCTTTGTGCTTACAGTTACTTGTTTGGCTGAGCATGTTATCATGAAGTGCTGGCTTTTTTATGTTTGTCTTTGAGGTATTTTGGAGTGCTTGTGCCATTTCCCAATGGCAATGTAAACAAGGGTTTTATTCTCTGCTTTGTTAACTTATAGGGTATCATAGTATGGAGACATCTTTGTTGATATTATCTCTGACAAGTTCTTAGTCACAGCACATATGTTATACAGCTATAGCTTTGAACCTCTATGCTCATAAAGATGGTACAAAGGTTTTGGTCATGTTGTATTTTGTGTACCTCTAGGAGACCAGGTGTAGAAGAACGCAGTTGGTCCAGTTTCAAACTTGACGTTATAATAATTATTTTTATTTTTCTTCTGACACTTTAGTGGCCATAACTTGTATCTTTTTTCACAGAGTTGATTATGAATATTCTTGGCATGCTTTAG

Ace file of the UniGene sp_v3.0_unigene12814

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative receptor-like protein kinase 3 [Glycine max]	-	-	0.0	63%
FL-Next	sp=Probable receptor-like protein kinase At2g42960; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Sma3	Protein kinase domain containing protein, expressed	-	-	5.698e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	2.414e-08	-
Sma3		EC:2.7.11.3-	-	4.597e-09	-

Source	Gene names
Sma3	AT1G60800; AT3G24550; AT4g01330; AT4g02010; AT4g02630; AT4g34500; A_IG002N01.22; At1g01540; At1g26150; At1g52290; At1g56720; At1g60800; At1g68690; At1g70460; At2g20300; At2g42960; At3g17420; At3g20530; At3g59110; At4g02010; At4g02630; At4g34440; At4g34440

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	protoderm histogenesis	GO:0010068	Biological Process	-
Sma3	cuticle development	GO:0042335	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-
Sma3	organ formation	GO:0048645	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Interleukin-4/interleukin-13, conserved site	IPR018096	-	-
Sma3	Dil domain	IPR018444	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G56720.1	Protein kinase superfamily protein chr1:21263630-21265559 REVERSE LENGTH=492	67%
RefSeq	Arabidopsis thaliana	NP_564722.1	protein kinase [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002330049.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SJG2

Fln msg:

Fln protein: MSSGGFLNAQLSKKTSIFGMKLWVLIGLAVGTFIFLILFMLSLWLGSRRKSRRILEKLPINQIPKVSKEIKEVKVDRKGINNPPQGDAISFTNQGNSSKKNSDKVFVPVGVKGFSDAKKSSPGGSSLQQKGGVSQSVDGGSSEAHSIYRGSSSFATNTASPMSGMPEVSYLGWGYWFTLRDLEIATGYFAKENVLGEGGYGIVYKGQLANGTIVAVKNLFNNLGQAEKEFRVEVEAIGRVRHKNLVRLLGYCVEGTHRILVYEYVNNGNLEQWLHGAMRQWGFLTWEARMKIIFGTAKALAYLHEALEPKVVHRDIKSSNILIDHEFNAKVSDFGLAKLLGSGKSHVTTRVMGTFGYVAPEYANTGMLNERSDVYSFGVLLLEAITGREPVDYGRPAGEVNLVDWLKMMVGNRRSEEVLDPNMEVKPSTRALKKALLVALRCVDPDAEKRPKMGQVVHMHEADELPLRENRRVRAYRATHIEAGTQDRTYRFPKGSPGSRAGGSKAQQ*

Protein Length: 510

Fln nts: GTCCCCAGAAGCAAAAAGTTCGCAGCTTTCGTTCTCTACAGGAAATCCTGGCAATTAGGGCAGAATACAGAGACTTTGGGCAGTATGGGATATTTTTCTCAGGGGAGTTTCTTAATTCAAGCACGGTCATTCATTTCACGACCACCCGAGTAATCCACATATCTGAGAGATGCAAGCTGCGCTTCTGGGGAATTTACCTCGTGACCTTGGCAATTGGCACTGATAGAACGTTCGTGTGGAACTAGACTTTAAAA_-_ATGTCGTCTGGAGGGTTCTTGAATGCTCAGTTATCCAAGAAGACATCCATTTTTGGGATGAAACTCTGGGTCCTGATTGGTTTGGCTGTTGGAACATTCATTTTCTTAATTCTCTTTATGTTATCTCTTTGGCTTGGTTCTCGGAGAAAGTCGAGGAGAATACTAGAAAAGCTGCCCATTAACCAGATCCCAAAAGTTTCAAAGGAGATAAAAGAAGTAAAGGTTGATAGAAAAGGGATTAACAATCCTCCCCAAGGTGATGCAATTAGCTTCACTAATCAGGGCAATTCCAGCAAGAAAAATTCGGACAAAGTTTTTGTGCCCGTGGGGGTAAAGGGGTTTTCTGATGCAAAGAAGAGTAGTCCAGGGGGTTCCTCTCTTCAACAGAAGGGAGGAGTCTCACAATCAGTAGACGGGGGAAGCTCAGAGGCACATTCTATTTATAGAGGCTCCTCATCTTTTGCAACGAATACAGCTTCACCGATGAGTGGTATGCCTGAAGTCTCATATCTTGGATGGGGTTATTGGTTTACTTTAAGAGATCTAGAAATTGCCACAGGTTATTTTGCAAAGGAAAACGTACTTGGTGAAGGTGGTTATGGAATTGTCTACAAGGGTCAGCTTGCAAATGGAACTATAGTTGCAGTTAAGAACCTATTTAACAATTTAGGCCAAGCAGAGAAAGAGTTCAGGGTGGAAGTGGAGGCCATCGGCCGTGTCCGACATAAAAATCTTGTACGGTTGCTTGGCTATTGTGTAGAAGGAACTCACAGGATATTGGTATATGAGTACGTTAATAATGGCAATTTGGAGCAATGGCTTCACGGAGCTATGAGGCAATGGGGCTTTCTGACTTGGGAGGCCCGTATGAAAATTATCTTTGGGACTGCAAAAGCATTGGCATATTTGCATGAGGCGCTAGAACCAAAGGTTGTTCACAGGGATATTAAATCAAGCAACATCTTGATAGATCATGAATTCAATGCAAAGGTTTCTGATTTTGGTTTAGCAAAGCTTCTTGGTTCAGGAAAGAGCCATGTTACAACGAGAGTAATGGGTACATTTGGATATGTTGCTCCAGAGTATGCAAATACAGGGATGTTGAATGAAAGAAGTGATGTCTACAGTTTTGGGGTCCTCCTCCTAGAGGCTATCACTGGACGAGAGCCAGTTGACTATGGTAGACCTGCAGGAGAGGTGAACCTTGTTGATTGGTTAAAGATGATGGTAGGGAACAGACGTTCTGAAGAAGTTCTAGATCCAAATATGGAAGTAAAACCATCTACACGAGCTCTCAAGAAGGCACTTTTGGTGGCGCTAAGATGTGTTGATCCGGATGCAGAAAAGAGGCCAAAGATGGGCCAGGTTGTGCACATGCATGAAGCAGATGAATTGCCATTGCGTGAGAATCGAAGAGTCAGAGCATACCGGGCTACACACATAGAAGCTGGGACTCAAGATAGAACTTACCGATTTCCAAAAGGCAGCCCTGGTTCCAGAGCTGGAGGTTCAAAAGCACAGCAATGA___TTTGTGGACAACACAGATGATTGAGGTTCAAACAAAAATGGTCAGAAAATATAAATGATTTCAGGCATGGTATCATGCTTGGTTTCCAGGATTTTATCTTTTCAATTGAATTCTGTTAAAATCTTTAGAACTCTTCAAGAAGCAAGACGATTGATAGCTATTAGCCAATGTTTCTTGCATTCTTATACTTTTCACATGAGAAGTAGCCACTACTTATAGAATACTATAAAGATACGATGATATTTCGACCCAAACTGGACGGTTTATTGGTCTAAAGAAAGTCCACTAGAAACCATATGGTCAGCTTTTCCAAATGCTGGAATCAAGCAAAGCTTCGTGTGACATAAAGGGAAAAGGACGGGCAAGCCTTCAAGATTCCTATGATTTAGGCAAAAAGTCAGTGGGACTGGCAGATTAAGCAGGCCTTTGTGCTTACAGTTACTTGTTTGGCTGAGCATGTTATCATGAAGTGCTGGCTTTTTTATGTTTGTCTTTGAGGTATTTTGGAGTGCTTGTGCCATTTCCCAATGGCAATGTAAACAAGGGTTTTATTCTCTGCTTTGTTAACTTATAGGGTATCATAGTATGGAGACATCTTTGTTGATATTATCTCTGACAAGTTCTTAGTCACAGCACATATGTTATACAGCTATAGCTTTGAACCTCTATGCTCATAAAGATGGTACAAAGGTTTTGGTCATGTTGTATTTTGTGTACCTCTAGGAGACCAGGTGTAGAAGAACGCAGTTGGTCCAGTTTCAAACTTGACGTTATAATAATTATTTTTATTTTTCTTCTGACACTTTAGTGGCCATAACTTGTATCTTTTTTCACAGAGTTGATTATGAATATTCTTGGCATGCTTTAG

Fln Alignment:

Contig12814___LNAQLSKKTSIFGMK---LWVLIGLAVGTFIFLILFMLSLWLGSRRKSRRILEKLPINQIPKVSKEIKEVKVDRKGINNP-PQGDAISFTNQGNSSKKNSDKVFVPVGVKGFSDAKKSSPGGSSLXXXXXXXXXXXXXXXEAHSIYRGSSSFATN-------TASPMSGMPEVSYLGWGYWFTLRDLEIATGYFAKENVLGEGGYGIVYKGQLANGTIVAVKNLFNNLGQAEKEFRVEVEAIGRVRHKNLVRLLGYCVEGTHRILVYEYVNNGNLEQWLHGAMRQWGFLTWEARMKIIFGTAKALAYLHEALEPKVVHRDIKSSNILIDHEFNAKVSDFGLAKLLGSGKSHVTTRVMGTFGYVAPEYANTGMLNERSDVYSFGVLLLEAITGREPVDYGRPAGEVNLVDWLKMMVGNRRSEEVLDPNMEVKPSTRXXXXXXXXXXRCVDPDAEKRPKMGQVVHMHEADELPLRENRRVRAYRATHIE-AGTQDRTYRFPKGS
Q9SJG2_______________LNAEMSKKISFFGLKGLKLWVWVCLVVGVFIVMILCILSLWITFRRKSRRSSSKFPFNQIPHVSKDIR---VDRAGFQNPHPESLYIEMNDKSTGKTMMSH-----LGRTKSSDNDTLSQCSS---------VNHHERACSSHSGEEGGFGSAGRQYGGGPVTASPLVGLPEISHLGWGHWFTLRDLELATNRFAPVNVLGEGGYGVVYRGKLVNGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNSGNLEQWLHGAMRQHGNLTWEARMKIITGTAQALAYLHEAIEPKVVHRDIKASNILIDDEFNAKLSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKMMVGTRRAEEVVDPRLEPRPSKSALKRALLVSLRCVDPEAEKRPRMSQVARMLESDEHPFHKERRNKRSKTAGMEIVETKDESLG-PSGS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
83		33	66		0.997452
2518	86		13		0.999973
2571	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain