SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12785

Length: 914 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12785

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FGGY family of carbohydrate kinase [Arabidopsis thaliana] gb\|AEE85751.1\| FGGY family of carbohydrate kinase [Arabidopsis thaliana]	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%

Source	Gene names
Sma3	AT4G30310; AT4g30310; At4g30310; GSVIVT00031422001; Os02g0177900; OsJ_05603; P0504A05.27-1; POPTRDRAFT_262325; POPTRDRAFT_262327; POPTRDRAFT_585167;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate kinase, FGGY	IPR000577	-	-
Sma3	Carbohydrate kinase, FGGY-related	IPR006003	-	-
Sma3	Carbohydrate kinase, FGGY, N-terminal	IPR018484	-	-
Sma3	Carbohydrate kinase, FGGY, C-terminal	IPR018485	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G30310.2	-	74%
RefSeq	Arabidopsis thaliana	NP_849474.1	FGGY family of carbohydrate kinase [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002324483.1	predicted protein, partial [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LK74

Fln msg: your sequence is shorter than subject: 252 - 575

Fln protein: FHSRCLGAFLVAMVPELWLTEGGQSATGALLDHMVENHAAAPILANRAASQNVSLYELLNRTLKTMAHDLQAPFIASLSKDLHVLPDFHGNRSPVADPKAKGMICGLTLDTSDKSLAILYLSTVQSIAYGTRHIIEHCNSHGHKIDTLFACGGLSKNSLYVQEHADIIGFPVILPREKESVLLGAAILGAVAAKKYATLHDAMKALNAPGQVFQPCQDPEVKKYHDAKYRIFRALYEQQLSYRAIISDALG*

Protein Length: 253

Fln nts: TTTCATTCCAGGTGTCTGGGGGCCTTTTTGGTGGCAATGGTACCAGAGTTATGGCTTACTGAAGGTGGACAGAGTGCAACTGGGGCTTTATTGGATCATATGGTTGAAAATCATGCTGCGGCTCCTATTCTGGCAAACCGTGCAGCATCACAAAATGTCTCACTATATGAGCTACTAAATAGAACTTTAAAAACAATGGCACATGATTTACAAGCCCCATTTATTGCCTCTTTGTCAAAGGATTTACATGTGCTTCCAGACTTCCACGGCAACAGATCTCCAGTTGCAGATCCGAAAGCAAAAGGGATGATTTGTGGCCTGACACTTGATACCAGTGACAAATCATTGGCTATTTTGTATCTTTCCACAGTACAAAGCATTGCATATGGCACACGTCACATCATTGAACATTGCAATTCTCATGGTCATAAGATTGATACACTTTTTGCATGTGGAGGACTCTCCAAAAATTCTTTGTATGTTCAAGAGCATGCAGACATCATTGGTTTCCCTGTGATATTGCCAAGAGAGAAAGAGTCAGTTCTCCTAGGTGCAGCTATATTGGGTGCAGTTGCTGCTAAGAAGTATGCCACTCTTCATGATGCAATGAAAGCACTTAATGCACCAGGCCAGGTGTTCCAGCCATGCCAAGACCCCGAGGTGAAGAAATACCATGATGCAAAATACCGTATATTTCGTGCACTATATGAACAACAACTCTCTTATCGAGCAATTATAAGTGATGCTCTTGGTTAA___ATTAAACATTATGTTGTATCATGGACACAACTCTCAAGTGTAATACTCATTTGATAGCATCATCTCATATTTGTTTTAATACGGGAATATGATGGCTTTCTGTTCACTGTAAGTGGTCAGGAACGTTCCAAATCATGGATTAACTGTAACATTAGTCA

Fln Alignment:

Contig12785___GAFLVAMVPELWLTEGGQSATGALLDHMVENHAAAPILANRAASQNVSLYELLNRTLKTMAHDLQAPFIASLSKDLHVLPDFHGNRSPVADPKAKGMICGLTLDTSDKSLAILYLSTVQSIAYGTRHIIEHCNSHGHKIDTLFACGGLSKNSLYVQEHADIIGFPVILPREKESXXXXXXXXXXXXXKKYATLHDAMKALNAPGQVFQPCQDPEVKKYHDAKYRIFRALYEQQLSYRAIISDAL
B8LK74_______________GPFWSAMVPELWLTEGGQSATGALLDHMVENHAAAPILANRAASQNVSLYELLNRTLETMAHDLQVPFVASLSKDLHVLPDFHGNRSPVADPKAKGTISGLTLDTNDKSLAILYLATVQSIAYGTRHIIEHCNSHGHKIDTLFACGGLSKNSLYVQEHADIIGCPVILPREKESVLLGAAILGAVSAKKYATLHDAMKALNAPGQVFQPSQDPKVKKYHDAKYRIFRALYEQQLSYRAIISDAL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
214		66	33		0.997452
255	20		80		0.995493
302		85	14		0.993533
303	85			14	0.993533
812		37	62		1.0
897		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain