SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12768

Length: 529 nt

UniGene Fasta

>sp_v3.0_unigene12768
TCACTGTTGTCAAGAAAGAACAAAAAAATCTAGATGTTGTGATTAATGGAATTGTTTTTGATATTTCAACTATGCCTATTCCTGTTTGCACTTGCACTGGAGTGGCTCAACAATGTTACAGGTGGGGGAATGGTGGTTGGCAGTCAGCTTGTTGCACGACTAGTATATCTATGTATCCCCTTCCGATGAATCCCAATAGGCGAGGTGCCCGTGTGGCTGGAAGGAAAATGAGTGGGGGTGCGTTCAGGAAATTGTTAGAGAGGCTTGGGGCTGAAGGTTTTAATCTAAATTACCCGATTGATTTGAAGAGTTACTGGGCAAAGCATGGTACAAATAAGTTTGTTACTATCAGGTAAATGAATTTCATTACAGAAATTGACTTTGTTTCAACGTCTTCACCTGTTACTTCTTGCTGGATTAAATCACATTCGCTCAACCACAGTATGTACATTATTAGAGGAAGGATTTTTGGTAGGATATAATTGGCAATTGTACTATCTTTTGTTACATAAGAACATGGAATTGGGTG

Ace file of the UniGene sp_v3.0_unigene12768

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam06217, GAGA_bind, GAGA binding protein-like family	-	-	0.0	73%
FL-Next	tr=GAGA-binding transcriptional activator; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Sma3	GAGA-binding transcriptional activator	-	-	4.2039e-45	-

Source	Gene names
Sma3	AT2G01930; AT2G21240; AT4g38910; At1g14685; At1g68120; At2g01930; At2g21240; At2g35550; At2g35550/T32F12.7; At4g38910; At5g42520; BBR; BBR/BPC1; BBR/BPC2; BBR/BPC3; BBR/BPC6; BPC1; BPC2; BPC3; BPC4; BPC6; F19H22.10; GSVIVT00017893001; GSVIVT00030652001; L

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	specific transcriptional repressor activity	GO:0016566	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	0.0	-
Sma3	GAGA binding-like	IPR010409	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G14685.3	-	69%
RefSeq	Arabidopsis thaliana	NP_849662.1	basic pentacysteine 2 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002314755.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: H1ZN64

Fln msg: your sequence is shorter than subject: 118 - 313

Fln protein: TVVKKEQKNLDVVINGIVFDISTMPIPVCTCTGVAQQCYRWGNGGWQSACCTTSISMYPLPMNPNRRGARVAGRKMSGGAFRKLLERLGAEGFNLNYPIDLKSYWAKHGTNKFVTIR*

Protein Length: 119

Fln nts: TCACTGTTGTCAAGAAAGAACAAAAAAATCTAGATGTTGTGATTAATGGAATTGTTTTTGATATTTCAACTATGCCTATTCCTGTTTGCACTTGCACTGGAGTGGCTCAACAATGTTACAGGTGGGGGAATGGTGGTTGGCAGTCAGCTTGTTGCACGACTAGTATATCTATGTATCCCCTTCCGATGAATCCCAATAGGCGAGGTGCCCGTGTGGCTGGAAGGAAAATGAGTGGGGGTGCGTTCAGGAAATTGTTAGAGAGGCTTGGGGCTGAAGGTTTTAATCTAAATTACCCGATTGATTTGAAGAGTTACTGGGCAAAGCATGGTACAAATAAGTTTGTTACTATCAGGTAA___ATGAATTTCATTACAGAAATTGACTTTGTTTCAACGTCTTCACCTGTTACTTCTTGCTGGATTAAATCACATTCGCTCAACCACAGTATGTACATTATTAGAGGAAGGATTTTTGGTAGGATATAATTGGCAATTGTACTATCTTTTGTTACATAAGAACATGGAATTGGGTG

Fln Alignment:

Contig12768___TVVKKEQKNLDVVINGIVFDISTMPIPVCTCTGVAQQCYRWGNGGWQSACCTTSISMYPLPMNPNRRGARVAGRKMSGGAFRKLLERLGAEGFNLNYPIDLKSYWAKHGTNKFVTIR
H1ZN64_______________TVVKKEQKNLDVVINGIVFDISAMPIPVCTCTGVAQQCYRWGNGGWQSACCTTSISMYPLPMNPNRRGARVAGRKMSGGAFRKLLERLGAEGYNLNYPIDLKSYWAKHGTNKFVTIR

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
216		25	75		0.996473
219			75	25	0.996473
221	75		25		0.996473
222	75	25			0.996473
223			75	25	0.996473
225	75			25	0.996473
226	75	25			0.996473
228	75	25			0.996473
230		25	75		0.996473
262			80	20	0.995493
263	20		80		0.995493
265	20			80	0.995493
299		16		83	0.994512
365		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain