SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12740

Length: 2361 nt

UniGene Fasta

>sp_v3.0_unigene12740
CGTCGTGACCTTGGCTGTCACTCAATTTTTTTCCTGGTGGTTGTATGGCTGGGACTGATATGATTTGTGGATTACTATGAAATAAAATAACTTTGGGCTGTTATTGGATTCCTGGTCTGGACCTTCAACGGATTTGGTTTAGTTGTTTTTCCTATAAATATGCCGAAGTGGGCATAATTCAAAATGAGTTTTTGGGATTGAGCTGGCTCAGCTTTTCATAAAGGGCACATAGGCTGAGGTGGACATCATAGAAGTTGTATTTTTGGGATTGGTTGCGTTGATTTTTTTCCAAAAAAGGGCAGAAGACCAAGGTGGGCGTCATTAAATTTGTATTTCTGGGATTGGGTTGACTGAATTTTTGATAGAAGAGCATACAGGCCGGGGTGGGCATAATTCAAATTGTATTTTTGAGACTGGGATGGCTGGAATTCTGATAAAAGGGCATACAGGCTGAGAGGCGGGCATCATTCCAGGTAAAATGTTTATAAAAGGGCAAACTAGCTGAGGTGTGCAGGGTTCACTATAGTTTCTCAAGGTTGTTGGTAGTGTTTCGTCTGCAAAAGAGACAAGAGCTGACCTGGGAACATTCTGTGTAGCGATGTTTGAACATGGTGCAGCTTCCTCTTCAATGGAGATGAGCCACTGCAAATTCCCCCCCATCTCAGTTTTACCATGCCCCAAGAGTGGTCTTTTAAATGCATCCAGAAACTATGAACACAGTTCCACCTGCACACAGGGAGTTGAGAGGAAGGGGGGTTTTCGGCTTTTCCGCCGGCCTGTTTTTCGCACATTCTTAAAATTGAAGTTGGGACCAAATCGCACGGTTCCATTTTTTAGATTGGGTAACGGTACTAGTATAATTTGTGCATCAGAGAGAAGATTAAACAAGGAGACTGCCAGTGGTTGGCCTCTCTGCAATGCTGTTGGCACCGAGGCAAAACAACTGAATGAAGACCATTCTCAAGAGGATCCTGGAGAGAATGGTCAAAGCAAAGCGAGCAAGGAGCCAGAGGGCATACAGAGTGATGAACTTGAACAGCAACGTCAAAAGAGCCAATTGCAAAAGCGGATTGTTTTTGGTTTGGCCATTGGTATTGGTGTTGGTGGAGTCGTATCGGCGGGACCTTGGATGTCACTAAAGTTGCAGTAGCTTTGTCAACCCTAGTTGGTACACGAGAGTATTTTGAGTTAGTTAGAAGTCGTGGAATAGCTGCAGGCATGACTCCTCCTCCTAGATATGTATCAAGAGTTTGTTCTGCAGTTTGTGCACTCATGCCTTTGATGACACTGTACTTTGGAGGTCGCATGGGAGTTGCTGTGACATCATTTGCTTTCTTTCTAGCAATTGTTCTATTGCTTCAAAGAGGAAGTCCTCGCTTTGCCCAGCTGAGCAGTGCAATATTTGGGCTATTTTACTGTGGGTATCTTCCATGTTTCTGGGTTAAACTCCGATGTGGTCTTTCAGCTCCTGCATTGAATACGACAATAGGAGCATCATGGCCAGTATTGCTAGGTGGTCGAGCACAATGGACTGTGGGTCTTGTGGCAACTTTGATTTCCTTTAGCAGTATTATTGCAGCAGACACAGGCGCATTCCTAGGAGGAAAGACCTTTGGTAGAACTCCTTTAACTGTTGTTAGCCCCAAGAAGACGTTGGAAGGGGCATTTGCTGGCTTTAGTGCTTCTGTCGCAGTTACAATTGTACTTTCCAAAGTTTTCAATTGGCCTACATCGTTCTTAAGTGCATCAGCATTTGGAGTTCTCACTTTTATGGGATCTCTTTTTGGGGACCTGGTTGAGTCAATGATCAAGCGTGACGCAGGTGTCAAGGATTCTGGAAAGCTCATCCCTGGACATGGTGGCTTGCTAGACCGAGTTGATAGCTACATGTTCACTGGTGCTCTTGTTTATTCATTTGTAAAAACTGGCTTGCCCCTTTATGGTGTTTGATATTAGTTGATCCCCAGTAATGCCATGAAAATGGCAGCCAAATTGTAAATGAAGTTTTTGCAATCACTCAATAAGCCTGTCTTATGGAGTTAAAGATTGCTCTGAAATCAAAACATTTTCCTTGGCATGGCCCTGAACAGGTAATTATCCTTCGAGCACAGAAACTATACTTGGATCAAATATTTTTATTCTAGCAACATTTGTGACTTAATTCTTTCGTAGCGTAAAATTGATCAGAAGGAGAAGATATATGTGAAATAATGTTTATACAATTTAGAGCGAAATTGATTTATTCAGATGTATCAGCAGCACAGTACAAAAGGCCATTTTTCCTTGTGGTGGCACTTTTGTTTCTCAATGGTTGTCAGAGGCAATTAACATAGTTGCATGTATTGATTTTACTCTTTATAA

Ace file of the UniGene sp_v3.0_unigene12740

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative phosphatidate cytidylyltransferase [Arabidopsis thaliana]	-	-	0.0	73%
FL-Next	sp=Phosphatidate cytidylyltransferase; Ricinus communis (Castor bean).	-	-	0.0	74%
Sma3	Phosphatidate cytidylyltransferase	-	-	1.671e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphatidate cytidylyltransferase.	EC:2.7.7.41	-	1.064e-29	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycerophospholipid metabolism	00564	1.064e-29	%
Sma3	Metabolic pathways	01100	1.064e-29	%
Sma3	Phosphatidylinositol signaling system	04070	1.064e-29	%

Source	Gene names
Sma3	AT2G45150; At2g45150; At3g60620; CHLREDRAFT_188754; GSVIVT00026419001; OSTLU_37424; Os02g0126900; OsI_05683; OsJ_05216; Ot04g03680; P0482F12.20; PCT2; PHYPADRAFT_132160; PHYPADRAFT_134556; RCOM_1610540; T4C21_30; VITISV_000886;

Source	GOs	Term	Type	Identity
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	phosphatidate cytidylyltransferase activity	GO:0004605	Molecular Function	-
Sma3	transferase activity, transferring phosphorus-containing groups	GO:0016772	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphatidate cytidylyltransferase	IPR000374	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G45150.1	CDS4 cytidinediphosphate diacylglycerol synthase 4 chr2:18613402-18615347 FORWARD LENGTH=430	0.0	73%
RefSeq	Arabidopsis thaliana	NP_973692.1	cytidinediphosphate diacylglycerol synthase 4 [Arabidopsis thaliana]	0.0	73%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9RD70

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 305 - 404

Fln protein: TATSKEPIAKADCFWFGHWYWCWWSRIGGTLDVTKVAVALSTLVGTREYFELVRSRGIAAGMTPPPRYVSRVCSAVCALMPLMTLYFGGRMGVAVTSFAFFLAIVLLLQRGSPRFAQLSSAIFGLFYCGYLPCFWVKLRCGLSAPALNTTIGASWPVLLGGRAQWTVGLVATLISFSSIIAADTGAFLGGKTFGRTPLTVVSPKKTLEGAFAGFSASVAVTIVLSKVFNWPTSFLSASAFGVLTFMGSLFGDLVESMIKRDAGVKDSGKLIPGHGGLLDRVDSYMFTGALVYSFVKTGLPLYGV*

Protein Length: 306

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTTCCTGGTGGTTGTATGGCTGGGACTGATATGATTTGTGGATTACTATGAAATAAAATAACTTTGGGCTGTTATTGGATTCCTGGTCTGGACCTTCAACGGATTTGGTTTAGTTGTTTTTCCTATAAATATGCCGAAGTGGGCATAATTCAAAATGAGTTTTTGGGATTGAGCTGGCTCAGCTTTTCATAAAGGGCACATAGGCTGAGGTGGACATCATAGAAGTTGTATTTTTGGGATTGGTTGCGTTGATTTTTTTCCAAAAAAGGGCAGAAGACCAAGGTGGGCGTCATTAAATTTGTATTTCTGGGATTGGGTTGACTGAATTTTTGATAGAAGAGCATACAGGCCGGGGTGGGCATAATTCAAATTGTATTTTTGAGACTGGGATGGCTGGAATTCTGATAAAAGGGCATACAGGCTGAGAGGCGGGCATCATTCCAGGTAAAATGTTTATAAAAGGGCAAACTAGCTGAGGTGTGCAGGGTTCACTATAGTTTCTCAAGGTTGTTGGTAGTGTTTCGTCTGCAAAAGAGACAAGAGCTGACCTGGGAACATTCTGTGTAGCGATGTTTGAACATGGTGCAGCTTCCTCTTCAATGGAGATGAGCCACTGCAAATTCCCCCCCATCTCAGTTTTACCATGCCCCAAGAGTGGTCTTTTAAATGCATCCAGAAACTATGAACACAGTTCCACCTGCACACAGGGAGTTGAGAGGAAGGGGGGTTTTCGGCTTTTCCGCCGGCCTGTTTTTCGCACATTCTTAAAATTGAAGTTGGGACCAAATCGCACGGTTCCATTTTTTAGATTGGGTAACGGTACTAGTATAATTTGTGCATCAGAGAGAAGATTAAACAAGGAGACTGCCAGTGGTTGGCCTCTCTGCAATGCTGTTGGCACCGAGGCAAAACAACTGAATGAAGACCATTCTCAAGAGGATCCTGGAGAGAATGGTCAAAGCAAAGCGAGCAAGGAGCCAGAGGGCATACAGAGTGATGAACTTGAACAGCAACGTCAAAAGAGCCAATTGCAAAAGCGGATTGTTTTTGGTTTGGCCATTGGTATTGGTGTTGGTGGAGTCGTATCGGCGGGACCTTGGATGTCACTAAAGTTGCAGTAGCTTTGTCAACCCTAGTTGGTACACGAGAGTATTTTGAGTTAGTTAGAAGTCGTGGAATAGCTGCAGGCATGACTCCTCCTCCTAGATATGTATCAAGAGTTTGTTCTGCAGTTTGTGCACTCATGCCTTTGATGACACTGTACTTTGGAGGTCGCATGGGAGTTGCTGTGACATCATTTGCTTTCTTTCTAGCAATTGTTCTATTGCTTCAAAGAGGAAGTCCTCGCTTTGCCCAGCTGAGCAGTGCAATATTTGGGCTATTTTACTGTGGGTATCTTCCATGTTTCTGGGTTAAACTCCGATGTGGTCTTTCAGCTCCTGCATTGAATACGACAATAGGAGCATCATGGCCAGTATTGCTAGGTGGTCGAGCACAATGGACTGTGGGTCTTGTGGCAACTTTGATTTCCTTTAGCAGTATTATTGCAGCAGACACAGGCGCATTCCTAGGAGGAAAGACCTTTGGTAGAACTCCTTTAACTGTTGTTAGCCCCAAGAAGACGTTGGAAGGGGCATTTGCTGGCTTTAGTGCTTCTGTCGCAGTTACAATTGTACTTTCCAAAGTTTTCAATTGGCCTACATCGTTCTTAAGTGCATCAGCATTTGGAGTTCTCACTTTTATGGGATCTCTTTTTGGGGACCTGGTTGAGTCAATGATCAAGCGTGACGCAGGTGTCAAGGATTCTGGAAAGCTCATCCCTGGACATGGTGGCTTGCTAGACCGAGTTGATAGCTACATGTTCACTGGTGCTCTTGTTTATTCATTTGTAAAAACTGGCTTGCCCCTTTATGGTGTTTGA___TATTAGTTGATCCCCAGTAATGCCATGAAAATGGCAGCCAAATTGTAAATGAAGTTTTTGCAATCACTCAATAAGCCTGTCTTATGGAGTTAAAGATTGCTCTGAAATCAAAACATTTTCCTTGGCATGGCCCTGAACAGGTAATTATCCTTCGAGCACAGAAACTATACTTGGATCAAATATTTTTATTCTAGCAACATTTGTGACTTAATTCTTTCGTAGCGTAAAATTGATCAGAAGGAGAAGATATATGTGAAATAATGTTTATACAATTTAGAGCGAAATTGATTTATTCAGATGTATCAGCAGCACAGTACAAAAGGCCATTTTTCCTTGTGGTGGCACTTTTGTTTCTCAATGGTTGTCAGAGGCAATTAACATAGTTGCATGTATTGATTTTACTCTTTATAA

Fln Alignment:

Contig12740___VTKVAVALSTLVGTREYFELVRSRGIAAGMTPPPRYVSRVCSAVCALMPLMTLYFGGRMGVAVTSFAFFLAIVLLLQRGSPRFAQLSSAIFGLFYCGYLPCFWVKLRCGLSAPALNTTIGASWPVLLGGRAQWTVGLVATLISFSSIIAADTGAFLGGKTFGRTPLTVVSPKKTLEGAFAGFSASVAVTIVLSKVFNWPTSFLSASAFGVLTFMGSLFGDLVESMIKRDAGVKDSGKLIPGHGGLLDRVDSYMFTGALVYSFVKTGLPLYGV
B9RD70_______________VFTVALAAAVFVGSREYFELVRSRGITARMTPPPRYVSRVCSVICALMPLLTLY-NGQIDIPVTFAAFVVAMALLLQRGNPRFAQLSSTMFGLFYCGYLPCFWVKLRCGLAVPALNTRIGATWPVLFGGQAHWTVGLVATLISMSSIIAADTYAFMGGKAFGRTPLTSISPKKTWEGTIVGLGGCIATSVILSRIFCWPTSLLSAIAFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDSYMFTGALAYSFVKTFLPLYGV

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
71	55			44	1.0
277	28	71			1.0
304			80	20	0.995493
305	80			20	0.995493
306	80	20			0.995493
593		12		87	0.992554
1322		20	80		0.995493
1324	20		80		0.995493
1325	80			20	0.995493
1371	16		83		0.994512
1431		12		87	0.992554
1446		12		87	0.992554
1620		12	87		0.992554
1622	87		12		0.992554
1623			87	12	0.992554
1624	87	12			0.992554
1686	18	81			0.999994
1687		18		81	0.999994
1693		81	18		0.999994
1696	81			18	0.999994
1699		18		81	0.999994
1702	80			20	0.999996
2207		15	84		0.999986
2214	81		18		0.999994
2219			11	88	0.923564
2220	11			88	0.923564
2222			11	88	0.923564
2223	88		11		0.923564
2225	88	11			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain