SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12703

Length: 1714 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12703

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase, putative n=1 Tax=Ricinus communis RepID=B9R6R5_RICCO	-	-	0.0	50%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	47%
Sma3	Receptor protein kinase CLAVATA1, putative	-	-	2.61e-29	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	2.426e-21	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	1.576e-20	-

Source	Gene names
Sma3	AT1G28440; AT1G34110; AT1G75820; AT3G49670; AT4G20270; AT4G28490; AT4G28650; AT4g20270; AT5G25930; AT5G49660; AT5G63930; AT5G65700; At1g09970; At1g09970/F21M12.36; At1g17230; At1g28440; At1g72180; At1g75820; At3g19700; At3g24240; At3g49670; At4g20270; At4

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	aminopeptidase activity	GO:0004177	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	epidermis development	GO:0008544	Biological Process	-
Sma3	embryo sac development	GO:0009553	Biological Process	-
Sma3	embryo development	GO:0009790	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	endosperm development	GO:0009960	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	microsporocyte differentiation	GO:0010480	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	interspecies interaction between organisms	GO:0044419	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	gametophyte development	GO:0048229	Biological Process	-
Sma3	floral organ development	GO:0048437	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Peptidase S33	IPR002410	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Proline iminopeptidase	IPR005944	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G49660.1	Leucine-rich repeat transmembrane protein kinase family protein chr5:20161401-20164534 REVERSE LENGTH=966	48%
RefSeq	Arabidopsis thaliana	NP_199777.1	putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002301126.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 17 aas, your sequence is shorter than subject: 403 - 998

Fln protein: CGNPGLCAKIFSRDETIGLCSASSHSQKESQRMKLAAGFIAGAAVLIFAVGLVLFRRYVHHEADRREKKENSSWKIAVFHNLSFNAEDLSSVLLLKEKANIIGSGASSKVYRADLPNNETVAVKHLWTTSKMDIDDISMDKHKEKNNGVENVYREHDHRLAKAEVETLGTIRHRNIVKLYCYLSNRHSNVLVYEYMPNGNLFEALHGNNNLDWPTRHKIALGTAYGLAYLHHDCSPAIIHRDVKSTNILLDQFYEAKIADFGVAKVLQACNRGRDSTTVFAGTHGYIAPEYAYSLKVTEKSDVYSFGVVLLELITGRGAIEPEFGENKNIVSWTSGKILESEDLIAVLDSKISKSFKDQMIQVLKIAMSCTHKLPALRPSMREVVQMLLDADPCKLQVKFNS*

Protein Length: 404

Fln nts: AATGTGGAAATCCAGGGCTTTGTGCTAAAATTTTCAGTAGGGATGAAACAATTGGACTGTGCTCGGCTTCTTCTCATTCTCAGAAGGAATCCCAGAGAATGAAATTGGCGGCCGGTTTCATTGCAGGTGCAGCAGTATTAATATTCGCCGTTGGACTGGTACTTTTCCGGAGGTATGTTCATCACGAAGCAGATAGGCGGGAGAAAAAGGAAAACTCATCATGGAAAATCGCAGTTTTCCATAATTTGAGCTTCAATGCGGAAGATCTTTCCAGTGTTTTACTACTGAAAGAAAAAGCCAATATAATTGGAAGCGGGGCATCCAGCAAGGTTTATCGCGCTGACCTACCCAACAATGAAACAGTGGCAGTGAAGCACCTATGGACGACCTCCAAAATGGATATAGATGATATTAGTATGGACAAACATAAGGAGAAGAATAACGGAGTGGAAAACGTTTACAGAGAGCATGACCATCGATTGGCCAAGGCAGAAGTTGAAACTTTGGGAACCATTCGCCACAGGAACATAGTGAAGCTTTATTGCTATCTGTCCAACAGGCACTCTAATGTGTTGGTCTATGAATACATGCCTAATGGGAACCTATTTGAAGCTTTGCATGGCAATAATAATTTGGATTGGCCGACACGACACAAGATTGCATTAGGGACAGCTTATGGATTAGCTTATCTTCACCATGATTGCTCTCCTGCAATTATCCATAGAGACGTCAAGTCTACCAATATCTTGCTGGATCAATTTTATGAGGCCAAGATTGCTGATTTTGGTGTTGCAAAAGTTCTTCAAGCTTGCAACAGAGGAAGGGATTCAACCACAGTTTTTGCAGGCACTCACGGTTACATTGCTCCTGAATATGCATACTCCTTGAAGGTTACCGAAAAGAGCGATGTTTACAGTTTTGGTGTGGTTCTGCTGGAGCTCATAACTGGCAGGGGGGCCATTGAACCAGAATTTGGGGAGAACAAGAATATTGTTTCTTGGACTTCAGGCAAAATCCTTGAGAGCGAAGATTTAATTGCTGTTCTCGACTCAAAAATTTCCAAGTCATTTAAGGATCAAATGATCCAGGTCTTGAAAATTGCAATGTCTTGCACACATAAACTGCCAGCTTTGCGGCCTTCCATGAGAGAAGTTGTGCAAATGTTGCTGGATGCAGATCCTTGTAAGTTGCAAGTGAAATTCAACTCCTAA___AGTGGTTATTGATAGACCTGTTCAGTCGTAAGGCCAATATCAGCTAACAAGAGCAGATTGTTGCTGATCAGAAGTGCATTTCATACAGTAACTACTATCAGTCTTCTTCTTTCTTCCTTAGTTGTGTTTATGCATCTTTTCACTTTCAGAAAATGAAAACACTCGTGTGTCTACCTCTATGGGTAATACTCCTGTAACTTCATGTTCCAACAAAATTTGGTCACTTCCTGTAACTTCATGGAGGTAAAAAGAGCAACAAAATCTGATAGTTGCAACTTCTATGTATATCTGTGTGCGATTCTTGATGGAGGATCTTCATTGTTTAATTGGACGTGATTACAAGATGATATCCTTTATGTTTGTTTACACCTGTCTAACAGGCTATCTGTCAGCTTTGAAATGGAAGAAAGTGTTCAGTCCACTTAGATAAGCTTGACACAGTTAACACTATTTGATCCTGTTACTGGTATTTGTTCTATTCCTTGATGATTTCTGTTTCTCCA

Fln Alignment:

Contig12703___GNPGLCAKIFSRDETIGLCSASSHSQKESQRMKL--AAGFIAGAAVLIFAVGLVLF-RRYVHH-EADRREKKENSSWKIAVFHNLSFNAEDLSSVLLLKEKANIIGSGASSKVYRADLPNNETVAVKHLWTTSKMDIDDISMDKHKEKNNGVENVYREHDHRLAKAEVETLGTIRHRNIVKLYCYLSNRHSNVLVYEYMPNGNLFEALHGNNN--LDWPTRHKIALGTAYGLAYLHHDCSPAIIHRDVKSTNILLDQFYEAKIADFGVAKVLQACNRGRDSTTVFAGTHGYIAPEYAYSLKVTEKSDVYSFGVVLLELITGRGAIEPEFGENKNIVSWTSGKILESEDLIAVLDSKISKSFKDQMIQVLKIAMSCTHKLPALRPSMREVVQMLLDADP
Q19AV8_______________GNPELC----SREAFNGTKSCSEERSERAKRQSWWWLLRCLFALSIIIFVLGLAWFYRRYRNFANAERKKSVDKSSWMLTSFHRLRFSEYEILDCL---DEDNVIVSDGASNVYKATLNNGELLAIKRLWSIYKTNASN---------DNGFQ------------AEVDTLGKIRHKNIVKLWCCCSKSDSNLLVYEYMPNGSLGDLLHGPKASVLDWPIRYKIALGAAQGLAYLHHGCVPAIVHRDVKSNNILLDEDYVAHVADFGVAKILQSCARGADSMSAIAGSYGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRRPVDPEFGENKDLVKWLCNKIEKKNGLHEVLDPKLVDCFKEEMTMVMRVGLLCTSVLPINRPSMRRVVEMLQEANP

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
181	83	16			0.994512
676		25		75	0.996473
740	20	80			0.995493
741		80		20	0.995493
742	80		20		0.995493
743	80	20			0.995493
744	20			80	0.995493
808			50	50	1.0
823	50		50		1.0
825		50	50		1.0
845		50		50	1.0
885		50		50	1.0
886			50	50	1.0
894		50		50	1.0
897	50	50			1.0
900	50		50		1.0
903	50		50		1.0
909		50		50	1.0
931		66		33	1.0
1127	16	83			0.994512
1239		66	33		0.997452
1263		33	66		0.997452
1698	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain