SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12701

Length: 2586 nt

UniGene Fasta

>sp_v3.0_unigene12701
ATGGGGGTACACAAAAGAGACTCGGCGAAAAGCGTGCAGCTGACATTTTAAACCTTATGAGGACATACCCATCTTTACGCGTGGCCTACATTGATCAAGTAGATGAGAGAGAGAAGGATAAAACTCTCAGGGTTTATTACTCTATCCTCGTCAAAGCATATAATGGCCTTGATCAGGTAATATACCGTATCAAGCTGCCTGGTGATCCTATTCTTGGTGAAGGGAAGCCAGAAAATCAGAATCATGCCATTATTTTCACTCGTGGAGAAGGTCTTCAAACAATCGATATGAACCAGGACAACTATCTAGAAGAAGCTTTCAAAATGCGAAACTTGCTACAAGAATTTCTTAAGAAACATGGTGTACGATGTCCAACAATACTTGGCCTTAGAGAACATATCTTTACGGGCAGTGTTTCATCACTTGCTTGGTTCATGTCAAATCAAGAAACTAGTTTTGTTACCATTGGACAGCGTCTGCTAGCAAACCCGCTTAAGGTGCGCTTTCACTATGGGCATCCTGATGTATTTGATAGATTGTTTCACCTCACAAGAGGTGGGATAAGTAAAGCTTCAAAAGGTATCAACCTAAGTGAGGACATTTTTGCAGGATTCAATTCTACACTACGGAAAGGAAATGTAACTCATCATGAATACATGCAAGTTGGTAAAGGTCGTGATGTGGGTCTCAATCAAATATCACAATTTGAGGCGAAGGTTGCAAATGGGAATGGTGAACAGACATTGAGTCGTGATATTTATCGGCTTGGACACCGGTTTGACTTTTTCCGGATGCTGTCTTGCTACTTCACTACTGTTGGGTTTTATTTCAGTTCTCTGGTGACAGTGCTAACAGTGTATATTTTTCTGTATGGTCGATTGTATCTGGTTTTGAGTGGACTTGAAAAAGCAATGTTACATGAAGCTGCTGTACAACATAATAGTTCTCTGGAAGCAGCCCTGGCTTCACAAGCATTTGTCCAGCTTGGTTTGTTAATGGCCTTACCTATGGTGATGGAAATTGGCCTAGAACGAGGATTCCGCACAGCCTTGAGTGATTTTGTGATCATGCAGCTGCAGCTGGCCTCAGTTTTCTTTACTTTCTCTCTTGGGACAAAGACACATTATTATGGCCGGACGTTACTCCATGGTGGAGCAAAATACAGAGCTACTGGGCGGGGTTTTGTTGTCTTTCATGCCAAGTTTGCAGAGAACTACCGCTTTTACTCACGCAGTCACTTTGTCAAAGGACTTGAGTTGATGTTGCTATTGATTGTGTACCATGTCTATGGCAAATCATATCGTAATACTATTGCCTATCTCTTAATCACTTTTTCCATGTGGTTTATGGTCGGGACGTGGCTATTTGCACCTTTCCTGTTTAATCCTTCAGGATTTGAGTGGCAAAAAATTGTAGATGACTGGACAGATTGGAACAAGTGGATCAACAGCCATGGAGGTATTGGTGTGCCACAGGACAAGAGTTGGGAATCCTGGTGGGATGATGAACAGGAGCATCTCAAGTATTCAGGCTTGCGGGGACGGATTTGGGAAATCTTGTTATCACTTAGATTTTTCCTCTACCAATATGGAATTGTGTATCACCTAAACATCACACATGACAGCAAAAGTGTTCTGGTATATGGACTATCTTGGTTTGTCATTGCAATTGTTTTAGGGGTATTGAAGACTGTTGCGATGGGGAGGCAGAAGTTCAGTGCAGATTATCAGCTCATGTTCCGGCTTCTGAAGGGGCTTCTATTCATTGGTTTCATTTCTGTTCTCATTATTCTCATTGTTGTCTGCGGCTTAACTGTAGCAGACTTGTTTGCATGTTTCCTTGCATTCATGCCTACTGGATGGGCCTTGCTGCAGATTGCACAAGCATGCAGGCCTCTATACAAACGCACTGGATTTTTGGAGTCTGTTCGTTCCCTTGCTCGTGGTTATGAATTTATAATGGGACTCCTACTTTTTACACCAGTTGCTATATTGGCTTGGTTTCCATTTGTATCTGAGTTCCAGACCCGTTTGCTCTTCAATCAGGCCTTCAGTAGAGGCCTGCAAATTTCACGTATTCTTGCTGGTAGGAAAAAAGATTGGTCTTCCACAAGCACAGAATAATATGCTGCACTATCGTGTTATGTTCATCTGATAAGATGCCGGGTCTTACATGAATTTGTTTTCATGGCCCGCTTGTCTACCTAAGTTGAGAAATCTATAGATAGTCAAATGCAATATTCTTCCTATTGAAGGAATGCACTATCTTCACAACATTTGTGGATTCCTTCTTTGATAACAATCATGACAATGTATTACCTAATATTGCAGTCTTTGTGATCTCAAGAATGGTGGATGAGCAAGATGATGTTCAACTCATTTTCTATCCGATATTTGGATAAAATATCAGTATCTCTGTGAAGTTGACATTATTGCAGATGTATGCTTCGTAGAATGGAGGTAACACTGAAGTCATTTTCTCATGTAAAGTAAGGAGTTAGCAATTAAGATGTAATATCATTGGTCTTAAACATTATGTTTTAACTTGTAAATATCGGAACTGGAAACAGCTTTATTCGTCCATTGT

Ace file of the UniGene sp_v3.0_unigene12701

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam02364, Glucan_synthase, 1,3-beta-glucan synthase component	-	-	0.0	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	1,3-beta-glucan synthase	-	-	2.387e-37	-

Source	ECs	Term	Type	e value	Identity
Sma3	1,3-beta-glucan synthase.	EC:2.4.1.34	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	At1g05570; At1g06490; At2g13680; At2g31960; At2g36850; At3g07160; At3g14570; At3g59100; At4g03550; At4g04970; At5g13000; At5g36870; BGS1; CALS1; CALS10; CALS11; CALS12; CALS2; CALS3; CALS4; CALS5; CALS6; CALS7; CALS8; CALS9; CFL1; CHLREDRAFT_123118; CalS3

Source	GOs	Term	Type	Identity
Sma3	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	-
Sma3	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	regulation of cell shape	GO:0008360	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	-
Sma3	defense response signaling pathway, resistance gene-dependent	GO:0009870	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	pollen wall assembly	GO:0010208	Biological Process	-
Sma3	developmental growth	GO:0048589	Biological Process	-
Sma3	defense response by callose deposition	GO:0052542	Biological Process	-
Sma3	callose deposition in cell wall	GO:0052543	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycosyl transferase, family 48	IPR003440	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13000.1	ATGSL12, gsl12 glucan synthase-like 12 chr5:4110445-4121202 REVERSE LENGTH=1955	77%
RefSeq	Arabidopsis thaliana	NP_196804.6	callose synthase [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002299147.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A848

Fln msg: your sequence is longer than subject: 689 - 248

Fln protein: MRTYPSLRVAYIDQVDEREKDKTLRVYYSILVKAYNGLDQVIYRIKLPGDPILGEGKPENQNHAIIFTRGEGLQTIDMNQDNYLEEAFKMRNLLQEFLKKHGVRCPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRLLANPLKVRFHYGHPDVFDRLFHLTRGGISKASKGINLSEDIFAGFNSTLRKGNVTHHEYMQVGKGRDVGLNQISQFEAKVANGNGEQTLSRDIYRLGHRFDFFRMLSCYFTTVGFYFSSLVTVLTVYIFLYGRLYLVLSGLEKAMLHEAAVQHNSSLEAALASQAFVQLGLLMALPMVMEIGLERGFRTALSDFVIMQLQLASVFFTFSLGTKTHYYGRTLLHGGAKYRATGRGFVVFHAKFAENYRFYSRSHFVKGLELMLLLIVYHVYGKSYRNTIAYLLITFSMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWNKWINSHGGIGVPQDKSWESWWDDEQEHLKYSGLRGRIWEILLSLRFFLYQYGIVYHLNITHDSKSVLVYGLSWFVIAIVLGVLKTVAMGRQKFSADYQLMFRLLKGLLFIGFISVLIILIVVCGLTVADLFACFLAFMPTGWALLQIAQACRPLYKRTGFLESVRSLARGYEFIMGLLLFTPVAILAWFPFVSEFQTRLLFNQAFSRGLQISRILAGRKKDWSSTSTE*

Protein Length: 690

Fln nts: ATGGGGGTACACAAAAGAGACTCGGCGAAAAGCGTGCAGCTGACATTTTAAACCTT_-_ATGAGGACATACCCATCTTTACGCGTGGCCTACATTGATCAAGTAGATGAGAGAGAGAAGGATAAAACTCTCAGGGTTTATTACTCTATCCTCGTCAAAGCATATAATGGCCTTGATCAGGTAATATACCGTATCAAGCTGCCTGGTGATCCTATTCTTGGTGAAGGGAAGCCAGAAAATCAGAATCATGCCATTATTTTCACTCGTGGAGAAGGTCTTCAAACAATCGATATGAACCAGGACAACTATCTAGAAGAAGCTTTCAAAATGCGAAACTTGCTACAAGAATTTCTTAAGAAACATGGTGTACGATGTCCAACAATACTTGGCCTTAGAGAACATATCTTTACGGGCAGTGTTTCATCACTTGCTTGGTTCATGTCAAATCAAGAAACTAGTTTTGTTACCATTGGACAGCGTCTGCTAGCAAACCCGCTTAAGGTGCGCTTTCACTATGGGCATCCTGATGTATTTGATAGATTGTTTCACCTCACAAGAGGTGGGATAAGTAAAGCTTCAAAAGGTATCAACCTAAGTGAGGACATTTTTGCAGGATTCAATTCTACACTACGGAAAGGAAATGTAACTCATCATGAATACATGCAAGTTGGTAAAGGTCGTGATGTGGGTCTCAATCAAATATCACAATTTGAGGCGAAGGTTGCAAATGGGAATGGTGAACAGACATTGAGTCGTGATATTTATCGGCTTGGACACCGGTTTGACTTTTTCCGGATGCTGTCTTGCTACTTCACTACTGTTGGGTTTTATTTCAGTTCTCTGGTGACAGTGCTAACAGTGTATATTTTTCTGTATGGTCGATTGTATCTGGTTTTGAGTGGACTTGAAAAAGCAATGTTACATGAAGCTGCTGTACAACATAATAGTTCTCTGGAAGCAGCCCTGGCTTCACAAGCATTTGTCCAGCTTGGTTTGTTAATGGCCTTACCTATGGTGATGGAAATTGGCCTAGAACGAGGATTCCGCACAGCCTTGAGTGATTTTGTGATCATGCAGCTGCAGCTGGCCTCAGTTTTCTTTACTTTCTCTCTTGGGACAAAGACACATTATTATGGCCGGACGTTACTCCATGGTGGAGCAAAATACAGAGCTACTGGGCGGGGTTTTGTTGTCTTTCATGCCAAGTTTGCAGAGAACTACCGCTTTTACTCACGCAGTCACTTTGTCAAAGGACTTGAGTTGATGTTGCTATTGATTGTGTACCATGTCTATGGCAAATCATATCGTAATACTATTGCCTATCTCTTAATCACTTTTTCCATGTGGTTTATGGTCGGGACGTGGCTATTTGCACCTTTCCTGTTTAATCCTTCAGGATTTGAGTGGCAAAAAATTGTAGATGACTGGACAGATTGGAACAAGTGGATCAACAGCCATGGAGGTATTGGTGTGCCACAGGACAAGAGTTGGGAATCCTGGTGGGATGATGAACAGGAGCATCTCAAGTATTCAGGCTTGCGGGGACGGATTTGGGAAATCTTGTTATCACTTAGATTTTTCCTCTACCAATATGGAATTGTGTATCACCTAAACATCACACATGACAGCAAAAGTGTTCTGGTATATGGACTATCTTGGTTTGTCATTGCAATTGTTTTAGGGGTATTGAAGACTGTTGCGATGGGGAGGCAGAAGTTCAGTGCAGATTATCAGCTCATGTTCCGGCTTCTGAAGGGGCTTCTATTCATTGGTTTCATTTCTGTTCTCATTATTCTCATTGTTGTCTGCGGCTTAACTGTAGCAGACTTGTTTGCATGTTTCCTTGCATTCATGCCTACTGGATGGGCCTTGCTGCAGATTGCACAAGCATGCAGGCCTCTATACAAACGCACTGGATTTTTGGAGTCTGTTCGTTCCCTTGCTCGTGGTTATGAATTTATAATGGGACTCCTACTTTTTACACCAGTTGCTATATTGGCTTGGTTTCCATTTGTATCTGAGTTCCAGACCCGTTTGCTCTTCAATCAGGCCTTCAGTAGAGGCCTGCAAATTTCACGTATTCTTGCTGGTAGGAAAAAAGATTGGTCTTCCACAAGCACAGAATAA___TATGCTGCACTATCGTGTTATGTTCATCTGATAAGATGCCGGGTCTTACATGAATTTGTTTTCATGGCCCGCTTGTCTACCTAAGTTGAGAAATCTATAGATAGTCAAATGCAATATTCTTCCTATTGAAGGAATGCACTATCTTCACAACATTTGTGGATTCCTTCTTTGATAACAATCATGACAATGTATTACCTAATATTGCAGTCTTTGTGATCTCAAGAATGGTGGATGAGCAAGATGATGTTCAACTCATTTTCTATCCGATATTTGGATAAAATATCAGTATCTCTGTGAAGTTGACATTATTGCAGATGTATGCTTCGTAGAATGGAGGTAACACTGAAGTCATTTTCTCATGTAAAGTAAGGAGTTAGCAATTAAGATGTAATATCATTGGTCTTAAACATTATGTTTTAACTTGTAAATATCGGAACTGGAAACAGCTTTATTCGTCCATTGT

Fln Alignment:

Contig12701___APFLFNPSGFEWQKIVDDWTDWNKWINSHGGIGVPQDKSWESWWDDEQEHLKYSGLRGRIWEILLSLRFFLYQYGIVYHLNITHDSKSVLVYGLSWFVIAIVLGVLKTVAMGRQKFSADYQLMFRLLKGLLFIGFISVLIILIVVCGLTVADLFACFLAFMPTGWALLQIAQACRPLYKRTGFLESVRSLARGYEFIMGLLLFTPVAILAWFPFVSEFQTRLLFNQAFSRGLQISRILAGRKKD
D5A848_______________APFLFNPSGFDWLKTVDDFDDFMNWIWYRGGILTKSEQCWEVWWTEEHDHLRNTGLWGIVLEILLDLRFFFFQYGIVYQLGISGGSKSIVVYLLSWIYVVVVLAIYIVILYAHDKYAAKQHIYYRAIQALVISCTILAILLLLQLTKLKLVDLVTSLLAFVPTGWGLILIAQVLKPFLQSSIVWEMVIAVARLYEVTFGIIVMIPMAILSWLPGFQSMQTRILFNEAFSRGLQISRILAGKKSN

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
65	66		33		0.997452
67			66	33	0.997452
70	66		33		0.997452
80		66		33	0.997452
85		33		66	0.997452
101		33	66		0.997452
109	66			33	0.997452
115	33		66		0.997452
116	66		33		0.997452
128	33	66			0.997452
132	66			33	0.997452
135	66		33		0.997452
139		66		33	0.997452
145		33		66	0.997452
164			66	33	0.997452
165	33			66	0.997452
167	33		66		0.997452
173		50		50	1.0
178		50		50	1.0
182	28		71		1.0
209	28		71		1.0
226	76		23		1.0
276		21	78		1.0
283	78		21		1.0
289		75		25	1.0
322	20			80	1.0
343	81		18		0.999994
344		81	18		0.999994
374		11		88	0.923564
376		11		88	0.923564
391		87		12	0.992554
412	16		83		0.994512
415	20	80			0.995493
514		25		75	0.996473
520	25		75		0.996473
571		50		50	1.0
577			40	60	1.0
584		40	60		1.0
585			60	40	1.0
593		75		25	0.996473
1959	33			66	0.997452
1961	66		33		0.997452
1962			33	66	0.997452
1963	66		33		0.997452
2032	25	75			0.996473
2033		75		25	0.996473
2035			25	75	0.996473
2036			25	75	0.996473
2039	20	80			0.995493
2041		80	20		0.995493
2042			20	80	0.995493
2043			20	80	0.995493
2048		85	14		0.993533
2049	85		14		0.993533
2090	14		85		0.993533
2352	93		6		0.999153
2419		6		93	0.999364
2420		93	6		0.999364
2560		71		28	1.0
2561		33	66		0.997452
2562			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain