SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12700

Length: 806 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene12700 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9RTG0_RICCO	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	LysM receptor-like kinase	-	-	2.797e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Receptor protein-tyrosine kinase.	EC:2.7.10.1	-	7.363e-09	-

Source	Gene names
Sma3	AT4g02010; At2g23770; At2g33580; At2g33580/F4P9.35; At4g02010; CERK1; CM0545.460.nc; CM0545.470.nc; GSVIVT00002969001; GSVIVT00006887001; GSVIVT00006888001; GSVIVT00014691001; GSVIVT00020114001; GSVIVT00025016001; GSVIVT00025017001; GSVIVT00025018001; GSV

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	phosphotransferase activity, for other substituted phosphate groups	GO:0016780	Molecular Function	-
Sma3	malonyl-CoA decarboxylase activity	GO:0050080	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	phospholipid biosynthetic process	GO:0008654	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	CDP-alcohol phosphatidyltransferase	IPR000462	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Aliphatic acid kinase, short-chain	IPR000890	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Adenovirus E3 region protein CR2	IPR003470	-	-
Sma3	Immunoglobulin-like	IPR007110	-	-
Sma3	Malonyl-CoA decarboxylase	IPR007956	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G33580.1	Protein kinase superfamily protein chr2:14219848-14221842 REVERSE LENGTH=664	48%
RefSeq	Arabidopsis thaliana	NP_180916.1	protein kinase family protein [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002311653.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ73

Fln msg: Distance to subject end: 87 aas, your sequence is shorter than subject: 268 - 536

Fln protein: IRKARAYKQTSISEDPRPPFNGRVVNTKSKLMTGISDCIENPFMYSIEDLQVATQNFSPSCNIEGSVYKGTLDGRDYAIKLMKGDISQELKILQKVNHTNLVKLEGFCISSEGQSYLVYEYVENSSLNTWLHDPESVENMSPIGWSSPSLPWKTRLQIALDVANGLQYIHEHTTPTVVHKDIKSSNILLDGNFRGKIANFGMAKSGINALTKHIMGTQGYMAPEYLADGFVSPKLDVFAFGVVLLEMISNKEAIVRERGVPLAGKAGL

Protein Length: 269

Fln nts: TTATTAGGAAGGCACGGGCGTATAAACAAACTAGCATCTCTGAAGATCCGAGACCGCCCTTTAATGGAAGAGTAGTAAATACGAAGAGTAAGCTTATGACTGGCATTTCAGACTGCATTGAGAACCCATTCATGTATTCTATTGAAGATCTCCAGGTAGCCACTCAGAATTTCAGCCCTTCGTGTAATATAGAGGGCTCTGTTTACAAAGGTACTCTAGATGGTAGGGATTATGCTATAAAGCTCATGAAAGGAGATATATCCCAAGAGTTGAAGATATTGCAGAAGGTCAACCACACTAATTTGGTTAAGCTAGAGGGATTTTGTATCAGTTCAGAGGGCCAGTCTTACTTGGTTTATGAGTATGTAGAAAATAGTTCTTTGAATACCTGGCTTCATGATCCAGAATCTGTTGAGAACATGAGTCCCATTGGTTGGAGCTCTCCCTCCCTTCCGTGGAAAACTAGATTGCAAATTGCTCTGGATGTTGCTAATGGGCTTCAATATATTCATGAGCACACAACCCCTACTGTTGTGCACAAGGATATCAAGAGTAGCAATATTCTTCTGGATGGCAACTTCAGGGGTAAAATTGCAAATTTTGGCATGGCTAAATCTGGTATTAATGCTCTCACAAAGCATATCATGGGCACACAAGGATACATGGCTCCGGAGTACCTGGCCGATGGATTTGTGTCCCCAAAGCTGGATGTGTTTGCATTTGGAGTTGTGCTTCTAGAGATGATTTCTAACAAGGAAGCCATAGTTCGAGAAAGGGGAGTGCCATTAGCTGGAAAGGCGGGCCTA

Fln Alignment:

Contig12700___IRKARAYKQTSISEDPRPPFNGRVVNTKSKLMTGISDCIENPFMYSIEDLQVATQNFSPSCNIEGSVYKGTLDGRDYAIKLMKGDISQELKILQKVNHTNLVKLEGFCISSEGQSYLVYEYVENSSLNTWLHDPESVENMSPIGWSSPSLPWKTRLQIALDVANGLQYIHEHTTPTVVHKDIKSSNILLDGNFRGKIANFGMAKSGINALTKHIMGTQGYMAPEYLADGFVSPKLDVFAFGVVLLEMISNKEAIVRERGVPLAGKAGL
B8LQ73_______________IRKRRSYKQTSISEDQRPPSDVGVGKTKSKLMTGISDCVENPFMYSIEDLDKATQNFSPLCNIEGSVYKGTLDGRDYAIKLMKGDISQELKILQKVNHTNLVKLEGVCISSEGQSYLVYEYIENSSLNTWLHDPESVENMSPIGWSSSSLPWKTRLQVALDVANGLQYIHEHTTPSVVHKDIKSSNILLDGNFRAKIANFGMAKSGINALTKHIMGTQGYMAPEYLADGFVSPKLDVFAFGVVLLEMISGKEAIVRERGVPLAGKAGL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
408			10	90	0.90298
487	77	22			0.999999
627	20		80		0.999996
654		12		87	0.992554
668	87			12	0.992554
737	20			80	0.995493
738		80		20	0.995493
752		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain