SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12670

Length: 2646 nt

UniGene Fasta

>sp_v3.0_unigene12670
CTAAATGTCTATCTGTCAAATTACCAGATGGCCCATAGATTCAGGCCTTCTTAGCTCTGTGTAAAGAGAAGAAAGTCGGATGATGGTGGGAGTGTTAGTACGACCTAGAGTTGTATGCGTCATCCACGCTGGCAAATGTTTTATTTATTTCCAAAATGCCTTGGAAAGCACATCCAATTTTCAGAACAGTGGCAGCAGTCAGCTCGTGTTGAAGGCAGTGAGTTCAGTGCTCAACTAGAAGTATCCATCGGTTTTCATTCAATCACCCCTTCTATACGCCATAAGTTTTAGCAGTCTCAGTCCATTTTCTAGGTTGGTGCGGTCCGTTTAACGGGGCATGCAACGTGCTGACCAGCTGGGGTTTTGGTTGTGCTGTGGACCTTAGTGTTAGTAATGGCCTGTGAAAGATTGCTGGGTCGATTGATTATTAATAGACAGAGCTAGAGCTAGGGCTAGAGATATTGGCGTTGTTTGCATTGGTGGTAGAAGTGGAAGAGGAAAAAATATGTCTGATCTAGAGCAGCCAATGTTAGTTCGGCCCAAGAGGAAGAAGGTTTGGGTGGATTACTTAGTGAACTTCAGATGGATATTAGTGATTTTTGTTGTTCTGCCCCTGTCATTCACATTCTATTTTATGACCTATTTGGGGGATGTTTGGTCTGAGAGCAAATCCTTCAAGCGTAGGCAGAAGGAGCACGACGAGAATGTGGAGAAGGTCATTAAACGTCTCAAGGAGAGAAACCCATCTAAAGATGGCCTCGTTTGCACTGCTAGAAAGCCTTATATTGCTGTGGGTATGCGCAATGTGGACTACAAGAGGGCCAGACACTTCGAGGTGGATCTGTCTGAATTCAGAAACATACTTGAAATTGACAAGGAGAAAATGATTGCGAGAGTAGAACCCCTGGTCAATATGGGTCAGATTACTAGGGTGACCGTGCCCATGAATCTGGCCCTGGCAGTGGTGGCCGAGCTGGATGATCTTACTGTTGGTGGGTTGATCAATGGGTATGGGATAGAAGGGAGTTCGCATATCTATGGGCTCTTTTCTGATACTGTTGTGGCATACGAGGTTGTGTTGGCCGATGGCCGATTAGTTAGGGCCACCAAGGATAACGAGTTTTCTGATCTTTTCTATGCAATCCCATGGTCCCAGGGTACACTTGGGCTTCTGGTAGCAGCAGAGATCAAGCTCATACCAATAAAGGAATACATGAGAGTAACCTATACGCCTGCTAGGGGTAACCTCAGGGAGTTAGCCCAGGCCTACATTGATTCCTTTGCACCCAGGGATGGAGATGAGTCCAAGGTCCCAGACTTTGTGGAGGGCATGATATATAACCCCACAGAAGCCGTGCACATGACAGGAAGATATGCCTCCAAGGAAGAAGCGAAGCAAAAGGGTAATGTTATCAACAGTGTTGGATGGTGGTTCAAGCCCTGGTTCTACCAGCACGCTCAGACTGCTCTTAAGAGAGGGGAGTTCGTTGAGTACATTCCCACTAGGGAGTACTACCACCGGCATACTCGGTGTCTCTATTGGGAGGGAAAGCTCATCTTGCCTTTCGCTGACCAATGGTGGTTCCGATGGACGTTGGGATGGCTCATGCCTCCAAAGGTCTCGTTTCTTAAGGCCACTCAGGGTGACGCTATAAGAAATTATTATCATGAAATGCATGTTATTCAGGATATGCTTGTTCCTCTGTACAAGGTCGCAGATGCGCTCGAGTTTCAGCACCGTGAGATGGAGGTATATCCTATTTGGCTGTGCCCTCATCGCCTCTTCCAACTTCCTGTGAAGACAACTGTCTACCCAGAGCCTGGTTTTGAGGAGGCGCAGAGGCAAGGTGACACAGAATATGCCCAGATGTACACAGATGTAGGCATCTATTATACTCCAGCTTGTGTCTTCCGTGGGGAGGCATTTGATGGAGCAGAAGCAGTGCGGAGAATGGAGAAATGGTTGATTGAAAATCATGGGTTTCAGCCACAATATGCTGTTTCAGAATTGAGTGAGAGAGACTTCTGGCGCATGTTTGATGGTTCACTCTACAACAGTTGCAGAGAAAAATACAGAGCCGTGGGAACTTTCATGAGTGTCTACTACAAAAGCAAGAAGGGAAGAAAGACTGAAAAGGAGGTTCAAGAGGAAGAGCAAAAGCAACTGGACAATGTATATGTCGAGTTGGACCAACCTGTGATGGAGTAACTACGAATGCTTGATTGAGGAGACCTTACAAATTTTATCGACAAATTCAGTTCATTTTGATTTCAAATTCTGATCTTTTTTTTTTCCTGTGCGTGTGGGTAAATTACCATTGGGAACAGTTAGTAGTACACAGAGCATTAGTCTCCAGGCATATTTTGAAGGTTATTTTGGGCTAGTCTGAAGCCTACTCACACAGTAGATCGCTTTAATTTTGAGAGACATTTTATCATATTTTTCCTTTGGCATGTTTGTTTGTGATTTACCAATGTATGTTTTTAATAACCTTTGGATCTTAGCCGTTCTCACAGTTGAATTTTGGCTATAGCTTTCAGTTCTTGATATCGAAAGTTAAATTTTTTTAAATACAAAGCACTGATCTGATGGAGATACATTTTCTCTGCTACAATGCACTTGTTTGATGGAATGCATTTTTGCTG

Ace file of the UniGene sp_v3.0_unigene12670

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cell elongation protein DIMINUTO [Arabidopsis thaliana] ref\|NP_850616.1\| cell elongation protein DIMINUTO [Arabidopsis thaliana] ref\|NP_001189937.1\| cell elongation protein DIMINUTO [Arabidopsis thaliana] sp\|Q39085.2\|DIM_ARATH RecName: Full=Delta(24)-ster	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Predicted protein	-	-	-

Source	Gene names
Sma3	POPTRDRAFT_564011; POPTRDRAFT_765722;

Source	InterPros	Term	Type	Identity
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G19820.1	DWF1, DIM, EVE1, DIM1, CBB1 cell elongation protein / DWARF1 / DIMINUTO (DIM) chr3:6879835-6881616 REVERSE LENGTH=561	81%
RefSeq	Arabidopsis thaliana	NP_001189937.1	cell elongation protein DIMINUTO [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002311294.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAF3

Fln msg: your sequence is longer than subject: 568 - 390

Fln protein: MSDLEQPMLVRPKRKKVWVDYLVNFRWILVIFVVLPLSFTFYFMTYLGDVWSESKSFKRRQKEHDENVEKVIKRLKERNPSKDGLVCTARKPYIAVGMRNVDYKRARHFEVDLSEFRNILEIDKEKMIARVEPLVNMGQITRVTVPMNLALAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEVVLADGRLVRATKDNEFSDLFYAIPWSQGTLGLLVAAEIKLIPIKEYMRVTYTPARGNLRELAQAYIDSFAPRDGDESKVPDFVEGMIYNPTEAVHMTGRYASKEEAKQKGNVINSVGWWFKPWFYQHAQTALKRGEFVEYIPTREYYHRHTRCLYWEGKLILPFADQWWFRWTLGWLMPPKVSFLKATQGDAIRNYYHEMHVIQDMLVPLYKVADALEFQHREMEVYPIWLCPHRLFQLPVKTTVYPEPGFEEAQRQGDTEYAQMYTDVGIYYTPACVFRGEAFDGAEAVRRMEKWLIENHGFQPQYAVSELSERDFWRMFDGSLYNSCREKYRAVGTFMSVYYKSKKGRKTEKEVQEEEQKQLDNVYVELDQPVME*

Protein Length: 569

Fln nts: CTAAATGTCTATCTGTCAAATTACCAGATGGCCCATAGATTCAGGCCTTCTTAGCTCTGTGTAAAGAGAAGAAAGTCGGATGATGGTGGGAGTGTTAGTACGACCTAGAGTTGTATGCGTCATCCACGCTGGCAAATGTTTTATTTATTTCCAAAATGCCTTGGAAAGCACATCCAATTTTCAGAACAGTGGCAGCAGTCAGCTCGTGTTGAAGGCAGTGAGTTCAGTGCTCAACTAGAAGTATCCATCGGTTTTCATTCAATCACCCCTTCTATACGCCATAAGTTTTAGCAGTCTCAGTCCATTTTCTAGGTTGGTGCGGTCCGTTTAACGGGGCATGCAACGTGCTGACCAGCTGGGGTTTTGGTTGTGCTGTGGACCTTAGTGTTAGTAATGGCCTGTGAAAGATTGCTGGGTCGATTGATTATTAATAGACAGAGCTAGAGCTAGGGCTAGAGATATTGGCGTTGTTTGCATTGGTGGTAGAAGTGGAAGAGGAAAAAAT_-_ATGTCTGATCTAGAGCAGCCAATGTTAGTTCGGCCCAAGAGGAAGAAGGTTTGGGTGGATTACTTAGTGAACTTCAGATGGATATTAGTGATTTTTGTTGTTCTGCCCCTGTCATTCACATTCTATTTTATGACCTATTTGGGGGATGTTTGGTCTGAGAGCAAATCCTTCAAGCGTAGGCAGAAGGAGCACGACGAGAATGTGGAGAAGGTCATTAAACGTCTCAAGGAGAGAAACCCATCTAAAGATGGCCTCGTTTGCACTGCTAGAAAGCCTTATATTGCTGTGGGTATGCGCAATGTGGACTACAAGAGGGCCAGACACTTCGAGGTGGATCTGTCTGAATTCAGAAACATACTTGAAATTGACAAGGAGAAAATGATTGCGAGAGTAGAACCCCTGGTCAATATGGGTCAGATTACTAGGGTGACCGTGCCCATGAATCTGGCCCTGGCAGTGGTGGCCGAGCTGGATGATCTTACTGTTGGTGGGTTGATCAATGGGTATGGGATAGAAGGGAGTTCGCATATCTATGGGCTCTTTTCTGATACTGTTGTGGCATACGAGGTTGTGTTGGCCGATGGCCGATTAGTTAGGGCCACCAAGGATAACGAGTTTTCTGATCTTTTCTATGCAATCCCATGGTCCCAGGGTACACTTGGGCTTCTGGTAGCAGCAGAGATCAAGCTCATACCAATAAAGGAATACATGAGAGTAACCTATACGCCTGCTAGGGGTAACCTCAGGGAGTTAGCCCAGGCCTACATTGATTCCTTTGCACCCAGGGATGGAGATGAGTCCAAGGTCCCAGACTTTGTGGAGGGCATGATATATAACCCCACAGAAGCCGTGCACATGACAGGAAGATATGCCTCCAAGGAAGAAGCGAAGCAAAAGGGTAATGTTATCAACAGTGTTGGATGGTGGTTCAAGCCCTGGTTCTACCAGCACGCTCAGACTGCTCTTAAGAGAGGGGAGTTCGTTGAGTACATTCCCACTAGGGAGTACTACCACCGGCATACTCGGTGTCTCTATTGGGAGGGAAAGCTCATCTTGCCTTTCGCTGACCAATGGTGGTTCCGATGGACGTTGGGATGGCTCATGCCTCCAAAGGTCTCGTTTCTTAAGGCCACTCAGGGTGACGCTATAAGAAATTATTATCATGAAATGCATGTTATTCAGGATATGCTTGTTCCTCTGTACAAGGTCGCAGATGCGCTCGAGTTTCAGCACCGTGAGATGGAGGTATATCCTATTTGGCTGTGCCCTCATCGCCTCTTCCAACTTCCTGTGAAGACAACTGTCTACCCAGAGCCTGGTTTTGAGGAGGCGCAGAGGCAAGGTGACACAGAATATGCCCAGATGTACACAGATGTAGGCATCTATTATACTCCAGCTTGTGTCTTCCGTGGGGAGGCATTTGATGGAGCAGAAGCAGTGCGGAGAATGGAGAAATGGTTGATTGAAAATCATGGGTTTCAGCCACAATATGCTGTTTCAGAATTGAGTGAGAGAGACTTCTGGCGCATGTTTGATGGTTCACTCTACAACAGTTGCAGAGAAAAATACAGAGCCGTGGGAACTTTCATGAGTGTCTACTACAAAAGCAAGAAGGGAAGAAAGACTGAAAAGGAGGTTCAAGAGGAAGAGCAAAAGCAACTGGACAATGTATATGTCGAGTTGGACCAACCTGTGATGGAGTAA___CTACGAATGCTTGATTGAGGAGACCTTACAAATTTTATCGACAAATTCAGTTCATTTTGATTTCAAATTCTGATCTTTTTTTTTTCCTGTGCGTGTGGGTAAATTACCATTGGGAACAGTTAGTAGTACACAGAGCATTAGTCTCCAGGCATATTTTGAAGGTTATTTTGGGCTAGTCTGAAGCCTACTCACACAGTAGATCGCTTTAATTTTGAGAGACATTTTATCATATTTTTCCTTTGGCATGTTTGTTTGTGATTTACCAATGTATGTTTTTAATAACCTTTGGATCTTAGCCGTTCTCACAGTTGAATTTTGGCTATAGCTTTCAGTTCTTGATATCGAAAGTTAAATTTTTTTAAATACAAAGCACTGATCTGATGGAGATACATTTTCTCTGCTACAATGCACTTGTTTGATGGAATGCATTTTTGCTG

Fln Alignment:

Contig12670___GLFSDTVVAYEVVLADGRLVRATKDNEFSDLFYAIPWSQGTLGLLVAAEIKLIPIKEYMRVTYTPARGNLRELAQAYIDSFAPRDGDESKVPDFVEGMIYNPTEAVHMTGRYASKEEAKQKGNVINSVGWWFKPWFYQHAQTALKRGEFVEYIPTREYYHRHTRCLYWEGKLILPFADQWWFRWTLGWLMPPKVSFLKATQGDAIRNYYHEMHVIQDMLVPLYKVADALEFQHREMEVYPIWLCPHRLFQLPVKTTVYPEPGFEEAQRQGDTEYAQMYTDVGIYYTPACVFRGEAFDGAEAVRRMEKWLIENHGFQPQYAVSELSERDFWRMFDGSLYNSCREKYRAVGTFMSVYYKSKKGRXXXXXXXXXXXXXLDNVYVELDQPVME
D5AAF3_______________GSFSDTVVAFEVVLADGRLVRATKDNEFSDLFYAIPWSQGTLGLLVAAEIKLIPIKEYMRLTYMPARGNLRELAQAYIDSFAPRDGDQSKVPDFVESMIYTPTEAVHMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAQTALKRGEFVEYIPTRQYYHRHTRCLYWEGKLILPFADQWWFRWTMGWLMPPKVSFLKATQGEAIRNYYHEMHVIQDMLVPLYKVADALEFQDREMEIYPIWLCPHRLFKLPVKTTVYPEPGFEEAHRQGDTEFAQMYTDVGIYYTPAPVFRGEAFDGAEAVRRMEKWLIENHGFQPQYAVSELNERDFWRMFDGSLYNSCREKYRAVGTFMSVYYKSKKGRKTEKEVREEEQKQLDNAYAELDQPVME

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
192	33		66		0.997452
195			66	33	0.997452
279			33	66	0.997452
287		85	14		0.993533
288		85	14		0.993533
289		71	14		0.984337
290			14	85	0.993533
404	90			10	0.90298
406		90	10		0.90298
510	83		16		0.999991
814	10		90		0.90298
816	10			90	0.90298
817			90	10	0.90298
823	90		10		0.90298
929	11	88			0.923564
931	11	88			0.923564
933			90	10	0.90298
1107	71		28		1.0
1275		88		11	0.923564
1277	11		88		0.923564
1433	72			27	1.0
1445			90	10	0.90298
1741			88	11	0.923564
2465		30		69	1.0
2582	90		9		0.999872

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain