SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12647

Length: 1792 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12647

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Response_reg multi-domain protein	-	-	3.0e-08	21%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	Type-b response regulator	-	-	2.708e-09	-

Source	Gene names
Sma3	ARP5; ARR1; ARR18; ARR2; AT3G16857; At2g03500; At2g20570; At2g20570/F23N11.11; At3g16857; At4g16110; At5g58080; FCAALL.297; GLK1; GSVIVT00015824001; GSVIVT00015881001; GSVIVT00018643001; GSVIVT00032706001; GSVIVT00033093001; Glk1; Glk2; K20I9.9; K21L19.7;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	two-component response regulator activity	GO:0000156	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	chloroplast organization	GO:0009658	Biological Process	-
Sma3	cytokinin mediated signaling pathway	GO:0009736	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	negative regulation of flower development	GO:0009910	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3	regulation of chlorophyll biosynthetic process	GO:0010380	Biological Process	-
Sma3	regulation of anthocyanin metabolic process	GO:0031537	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3		GO:0045941	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-
Sma3	primary root development	GO:0080022	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Response regulator, plant B-type	IPR017053	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRL2

Fln msg:

Fln protein: MVSVAEWKDFPKGLRVLVLDEDSEAAAETKSRLEGFEYVVSTFSNETEALAVLANETNSFHVALVEVSTGNSCGGFRFLQTACNIPTVMMSNRSCLSTTMKCIALGASEFLQKPISEDKLKNIWQHVVHKVEWTMDLHRRFVQAVEQLGVDQAIPSRILDLMKVDGLTRHNVASHLQKYRSHRRHILPRDDELASRRYWQHFDPAWTRTTQDESWSRTGNPASGPILAYSPVQLHSTPQGTPVGPPLHVWGHPTIDQSGSHMWQQLQVGTPTTWQAQDGSFWKHPGVYADAWGCPTVGMPFYPQPMMKLPSNHGHRSTPKPNSTIQGVSVQYPATLDPLNESLLWEKSINEHPPKEVIDEAFKEALNNPWTPLPLGLKPPSMESVMAELQRQGINKIPPPAS*

Protein Length: 404

Fln nts: TTTAATGTTTAAGC_-_ATGGTAAGTGTTGCAGAGTGGAAGGATTTTCCTAAAGGCCTCAGGGTTCTGGTGTTGGATGAGGACTCTGAGGCAGCTGCTGAAACTAAGTCCAGACTGGAAGGCTTTGAATACGTTGTTTCCACCTTCTCCAACGAAACAGAGGCATTGGCAGTGCTTGCAAATGAGACGAATTCATTCCATGTTGCTTTGGTTGAGGTGAGCACAGGTAACAGCTGTGGCGGTTTTAGGTTCCTACAGACTGCCTGCAATATACCAACCGTTATGATGTCAAACAGGAGCTGCCTGAGCACAACGATGAAGTGCATAGCACTGGGAGCATCAGAGTTCCTACAGAAACCAATATCTGAGGACAAGCTCAAAAATATTTGGCAACATGTGGTTCACAAGGTAGAATGGACAATGGACCTGCATCGGCGTTTTGTGCAAGCAGTGGAGCAACTTGGAGTTGATCAGGCAATCCCTTCAAGAATTTTGGACCTTATGAAAGTGGATGGCTTAACTCGGCATAATGTTGCTAGCCACTTACAGAAATATCGTTCTCACAGAAGGCACATTTTGCCAAGGGATGATGAACTTGCAAGCAGGCGATATTGGCAGCATTTTGACCCTGCCTGGACTAGAACTACGCAAGATGAATCTTGGAGTCGTACAGGGAATCCTGCTTCTGGACCAATTCTTGCATATTCACCAGTTCAGTTACATTCTACACCACAAGGGACTCCTGTGGGCCCACCTCTTCATGTTTGGGGACATCCCACTATAGATCAATCAGGTAGTCACATGTGGCAGCAACTTCAAGTGGGGACTCCTACTACATGGCAAGCACAAGATGGTTCTTTCTGGAAACATCCAGGGGTATATGCTGATGCTTGGGGTTGCCCCACAGTTGGGATGCCATTCTACCCCCAACCCATGATGAAGCTACCTTCCAATCATGGTCACAGATCAACCCCAAAGCCAAATTCAACAATACAGGGTGTTTCTGTCCAATATCCTGCAACTCTTGATCCACTTAATGAATCTCTTTTATGGGAAAAATCCATTAACGAGCACCCGCCAAAGGAGGTAATTGATGAAGCTTTTAAAGAGGCTTTAAATAACCCTTGGACACCTCTTCCTCTGGGCCTTAAACCTCCATCAATGGAGAGTGTTATGGCAGAGCTCCAGAGGCAAGGCATTAATAAAATTCCACCGCCTGCTTCATAA___GCAGTCATTAGCATGCAGATGGAAAGTCAAACAGTTTGGAATGAAATGGGAATATAACCAATAACAAGTCTCCCCTGTCAGATCAGAATTGATCCTTTGCTACGTGCTTGTATATTTCTGCATTTCAATGCTACAGAATTTCCCCTTGCTTCTCTGCAAAAAGTGCTAATTTTTGCTGAGAGAGATTATATGCACCTTACATGGTCCAACCTTTTATCAAGGCAGTCATTGAGGAATGCATCAAGTGAAGAAAAAACAAGCTCTGCAAAGGAAACATTTGTAAGATCTCGGCCTAAGCACTCCCTGCAATATCATGTTAGAGGCCTCTGAAGCCACTGGTTGAGAGTATCATGTTAGGCTATAGAGGTGTTTAGAGCTACCTGGTTAAGAGTGAGCTTCTTGGCATTGATCATTTAACCAGTGTGCTTTTTGCATGGCCCATTTCTCCAAGTGTAGCATTTTGAATTTTATTTTCCAAACTTTCGTTGAATAGTTTATACCGGGCAAGCCTACAAAGCCCACTATTTCAGTGATTTGCAATGTAGGGCCAAAATATTAATATTCAACCT

Fln Alignment:

Contig12647___KVEWTMDLHRRFVQAVEQLGVDQAIPSRILDLMKVDGLTRHNVASHLQKYRSHRRHILPRDDELASRRYWQHFDPAWTRT-TQDESW-SRTGNP--ASGPILAYSPVQLHSTPQGTPVGPPLHVWGHPTIDQSGSHMWQQLQVGTPTTWQAQDGSFWKHPGVYADAW--GCPTVGMPFYPQPMMKLP----SNHGHRSTP-------KP-NSTIQGVSVQYPATLDPLNESLLWEKSINEHPPKEVIDEAFKEALNNPWTPLPLGLKPPSMESVMAELQRQGINKIPPPAS
C0PRL2_______________KVDWTQDLHRRFVQAVEQLGVEKAVPSRILELMGVNCLTRHNIASHLQKYRSHRKHLLAREAEAAT---WNHRRQLYATTGTRARPWIGQNGNPLIQPRPSIGFPPM----APASHAPFRPLHVWGHPTVDHSSVHMWQKHSMPAPAPWPSPDGYFWQQTTACTNPWDHNAPASGTPLYPQPLMRLPLAPVTGVPHFMPPVYNGEYYKPDNSAIHPVNIDVPAHL----------KSSSFHPSKEKVDAAINEVLSNPWTPLPLGLKSPSLESVMAELQRQGIRDVPPASA

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
243	83		16		0.994512
409	66			33	0.997452
410		33	66		0.997452
412	66		33		0.997452
788	25		75		0.996473
977			57	42	1.0
1012	87		12		0.992554
1013			12	87	0.992554
1015	12	87			0.992554
1017		12	87		0.992554
1019	42			57	1.0
1022		14		85	0.993533
1123	11	88			0.923564
1223	80		20		0.995493
1256	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain