SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12616

Length: 1760 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene12616 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Iron-sulfur assembly-like protein [Arabidopsis thaliana] sp\|Q8GW20.2\|Y5390_ARATH RecName: Full=Uncharacterized protein At5g03900, chloroplastic; Flags: Precursor gb\|AED90669.1\| Iron-sulfur assembly-like protein [Arabidopsis thaliana]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	FeS cluster biogenesis	IPR000361	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G03900.2	Iron-sulphur cluster biosynthesis family protein chr5:1048338-1051869 FORWARD LENGTH=523	61%
RefSeq	Arabidopsis thaliana	NP_568129.1	Iron-sulfur assembly-like protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002305197.1	predicted protein, partial [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPE9

Fln msg:

Fln protein: MRFEPVLEKSKAVAEYLIRVSFGTALLASIVIVYTAIIAILSGKSEEDNRGRRGRSYDPGLGRSFDPGFNIFISPSDLFWYWDPYYYRRRRRKTEGGMNFFESVFSFVFGDGDPNQEIEEERWKLIGEYITSHGGVVTAEELAPYLDVPPIDGNKEDESYVLPVLLRFDGRPEVNSEGNILYRFPSLQRTASTWFGNRKEYVGKKWKTWVGEATQFLQEKRWDFSKAGGKEKSLVIALGGLNLAGVILLGSMLKDIATIRGGFLSFVTDVFPLLQIYAASFFAIPLSRWFLIRKKNVEIDERNRARKQRALALEMPDPTVRQKIESARAMAERTVIGADRIIYSSEKDFAEQDYDAKEWEREYRELERSD*

Protein Length: 372

Fln nts: TGATGCAGTCAAATTAACCAATGGCGCGGCTCTCGGTTTGCCTTTAATATGCAGAGCGGGTCTTAGAAGCTCCATAACGGAATTCAAGCCAGGAAGCCGCGTGGAAACGGATAAATTGCCGTCTGCTGTAAGAGATAGAACGATTAAAGCCGTGGATACACTAGGAAGACGGGTAACTATCGGTGACGTGGCCGGTAAGGCCGGTCTGAAGCTCAATGAAGCAGAGAAGGCGCTGCAGGCTCTTGCAGCTGACGCAGGGGGCTTTTTAGAGGTTTCAGATGAAGGAGATGTGCTGTATGTTTTCCCGAGGGATTATCGAGCCAAACTTGCTGCTAAATCTTTTAGG_-_ATGAGATTTGAACCTGTACTGGAGAAATCAAAGGCTGTGGCAGAGTATTTAATCAGGGTTTCATTTGGAACAGCACTTCTTGCCTCCATTGTTATTGTTTATACAGCAATCATTGCTATTTTGTCTGGCAAAAGTGAGGAAGACAATCGTGGAAGACGTGGAAGATCATATGATCCAGGATTAGGCAGATCGTTTGATCCAGGATTCAATATTTTCATTAGCCCCTCTGACTTATTCTGGTACTGGGATCCATACTATTACAGGAGACGAAGAAGAAAGACAGAAGGCGGAATGAATTTTTTTGAATCTGTGTTCTCCTTCGTTTTTGGGGATGGTGATCCCAATCAAGAGATTGAAGAAGAGAGATGGAAATTGATTGGAGAGTACATTACTTCACATGGTGGGGTTGTCACAGCTGAAGAGCTTGCTCCATATTTAGATGTTCCTCCAATTGATGGAAACAAGGAGGATGAATCGTATGTTTTACCTGTGTTGCTACGGTTTGATGGACGTCCTGAGGTAAACAGTGAGGGTAATATTCTTTATCGATTTCCTTCCCTCCAGCGTACAGCCTCAACCTGGTTTGGCAATAGGAAGGAATATGTAGGCAAAAAATGGAAAACGTGGGTGGGAGAGGCCACACAATTTCTTCAGGAAAAGCGATGGGATTTCAGCAAAGCAGGCGGAAAGGAGAAATCACTGGTGATTGCTTTGGGAGGCCTCAACCTAGCTGGAGTTATTCTTTTGGGTAGCATGCTGAAGGACATTGCAACTATTCGCGGAGGGTTTCTTTCATTTGTCACAGACGTATTTCCACTGCTTCAGATTTATGCAGCATCATTTTTTGCAATTCCATTATCACGTTGGTTCCTTATTCGTAAGAAAAACGTGGAGATTGATGAAAGGAACCGTGCAAGGAAACAACGAGCTCTTGCACTTGAGATGCCAGACCCAACTGTTAGGCAGAAGATTGAAAGTGCTCGAGCTATGGCTGAACGGACAGTCATTGGGGCAGATCGCATCATATATAGTTCTGAGAAAGATTTTGCAGAACAAGACTATGATGCTAAAGAGTGGGAACGCGAATATAGAGAGCTCGAAAGATCAGATTAA___CTATGCATTTGTATGCTAATGTTCTTTAGCTGTACCATTTTGTTACTCTGTTGTTTCAGCTTATCTATTTCTTCATGTATCAAATCAACTGGTAATTATTTTTGTATTTTATTCTTCTTTATATCCTTTATTTTCTCTGTTGAGATAGATTTCTGCAACTGAGATTTCAATATTCTTATCCTTATTCTCTATATGTTCTATTCAAATGAACAATCTGAGGCCATGTTCATGGCTCCTAGTATATTCTGAATTTGTGGTAGAGCTTATTATTCAATGAAATAAACTTTACAAGAAGATTGTT

Fln Alignment:

Contig12616___MRFEPVLEKSKAVAEYLIRVSFGTALLASIVIVYTAIIAILSGKSEEDNRGRRGRSYDPGLGRSFDPGFNIFISPSDLFWYWDPXXXXXXXRKTEGGMNFFESVFSFVFGDGDPNQEIEEERWKLIGEYITSHGGVVTAEELAPYLDVPPIDGNKEDESYVLPVLLRFDGRPEVNSEGNILYRFPSLQRTASTWFGNRKEYVGKKWKTWVGEATQFLQEKRWDFSKAGGKEKSLVIALGGLNLAGVILLGSMLKDIATIRGGFLSFVTDVFPLLQIYAASFFAIPLSRWFLIRKKNVEIDERNRARKQRALALEMPDPTVRQKIESARAMAERTVIGADRIIYSSEKDFAEQDYDAKEWEREYRELERSD
B8LPE9_______________MRFEPVLDKLKAVAEYLIRVSFGTTLLASIVIVYTAIIVILSGRSEEDNRGRRGRSYDPG--------FNIFISPSDLFWYWDPYYYRRRRRKTEGEMNFFESVFSFVFGDGDPNQEIEEERWKLIGEYITSHGGVVTAEEVAPYLDVPPIDGNKEDESYVLPVLLRFDGRPEVNSKGDILYRFPSLQRTASTWIGSRKEYVGKRWKTFVGEATKFLQEKQWDFSKAGRKEKSLVIALGGLNLVGVIFLGSMLKDIATIRGGFLSFVTDIFPLLQIYAASFFAIPLSRWFLIRKKNMEIDERNRARKQRALALEMPDPTVRQKIESARAMAERTVIGADRIIYSSEKDFGEQDYDAKEWERRFRELERSD

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
612		75		25	0.996473
694	71		28		1.0
769	88		11		0.923564
1470	88		11		0.923564
1475	88		11		0.923564
1502	83		16		0.994512
1513	30		69		1.0
1647	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain