SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12583

Length: 1494 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12583

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ZIP metal ion transporter [Arabidopsis thaliana] sp\|Q940Q3.1\|ZTP29_ARATH RecName: Full=Zinc transporter ZTP29; AltName: Full=Zinc transporter 29 gb\|AAL06850.1\| AT3g20870/MOE17_16 [Arabidopsis thaliana] gb\|AAP21150.1\| At3g20870/MOE17_16 [Arabidopsis thalia	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc/iron permease	IPR003689	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G20870.1	ZTP29 ZIP metal ion transporter family chr3:7309499-7312476 REVERSE LENGTH=276	81%
RefSeq	Arabidopsis thaliana	NP_566669.1	ZIP metal ion transporter [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002299235.1	ZIP transporter [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0Y4

Fln msg:

Fln protein: MDSQVTVALMLSLVGGASTSLGALFVVINPTPKLKVLGLLQGFAAGLMLSISFLDLVHNAINSIGFLKANLWFFGGVVVFAFIINFIPEPTLVPSQNQADKSEKNHYDGGKDLMKKHRRQVFFSGIITAIGISLHNFPEGMAVFLGSIKGLRVGLNLALAIALHNIPEGIAVALPVYFATESKWQAFKLASLSGLAEPLGVVLVAYLFPSSLSPEILEGLLGAVGGVMAFLTLHEMLPLAFDYAGQKQAIKAVFIGMAVMSTSLYFLEISLPKEMSL*

Protein Length: 279

Fln nts: TCAATTTCCTATTTATGTGTCTGTTCAGAACCGCCTCATTTGCTAATAATCTATTGCTAACTTATCCACCTGCTTTAGGACTTTTTCTTACAAAATTTCTGCAGTGTGAAGGGTTCCTAAGGCAGGGGGGAA_-_ATGGATTCTCAAGTCACGGTTGCCCTCATGCTCTCTTTGGTAGGAGGAGCAAGTACATCACTTGGTGCTCTTTTTGTGGTTATCAACCCTACTCCTAAGTTGAAAGTGCTTGGACTTCTTCAGGGTTTTGCTGCAGGTCTTATGCTCAGCATCTCTTTCTTAGATTTGGTCCATAATGCTATCAACTCGATTGGCTTTTTAAAAGCGAATCTGTGGTTTTTTGGAGGTGTTGTAGTATTTGCTTTCATCATCAATTTTATTCCAGAGCCAACTCTGGTTCCCTCTCAAAATCAGGCAGATAAAAGTGAAAAGAATCACTATGATGGAGGGAAGGATCTGATGAAAAAGCATCGGAGGCAAGTCTTTTTCAGTGGCATCATAACTGCAATTGGTATCAGTCTGCATAATTTTCCAGAAGGAATGGCTGTTTTCCTGGGATCAATCAAGGGACTCCGTGTTGGTTTGAACTTAGCACTGGCCATTGCCTTGCATAATATCCCAGAGGGAATAGCCGTTGCACTGCCTGTATACTTTGCTACTGAAAGCAAGTGGCAGGCTTTTAAGTTAGCTTCTTTGTCTGGTCTTGCAGAACCCTTGGGGGTTGTTCTTGTAGCTTATCTATTTCCAAGCAGCTTATCCCCAGAAATTTTGGAAGGTCTACTTGGGGCTGTTGGAGGTGTGATGGCTTTCCTCACCCTTCATGAAATGTTACCACTAGCATTTGATTATGCAGGGCAGAAGCAAGCCATCAAAGCTGTTTTTATAGGCATGGCTGTAATGTCCACCAGCTTATATTTCTTGGAGATCAGCTTACCCAAGGAGATGAGTTTATAA___TGTTTGACGTCGGACTTGGTTCTCTCAATTACTTTTTTATGCTCATCCTGGATACCATAGCTATTCCGTTGATGGCAAGGAGCGAATTCCACAAGTGAAGGCTACTAGCCTCTATGAATCAAGTACAAACTAAAAGCAAGCATTTGAGATTGCCCAGAAATTCAGTTCTCCACTGAAATTCAATGACTGACCAAATGGAAAAGTATGATTGCGTCTGTGTATGCTAGTGTCATTTACACAAGTGGTGAGGTAGAGAAACATTGAAGAGTCAAATTCTAGTCGTTACTTTTATGTGTCATGATCTTCATTGTCGATTGAATTGGCTGATAAAAATATTGCAAGACTTTTCGCTTGCTTTGTCCAGTTTACAATATTGAATATAATCATTTAATTATTTATCAAATGCCAGATTTCCTTCCTGTTCTAGCTCTCAAGAAACATGATAAGGCTTACTTTGTGTCACTGGAATATAAAGGAGCAAAGCTATCAAGATTTTTTCATGGTGAATAATGATAGACATTTTTATCT

Fln Alignment:

Contig12583___MDSQVTVALMLSLVGGASTSLGALFVVINPTPKLKVLGLLQGFAAGLMLSISFLDLVHNAINSIGFLKANLWXXXXXXXXXXXXXXXPEPTLVPSQNQADKSEKNHYDGGKDLMKKHRRQVFFSGIITAIGISLHNFPEGMAVFLGSIKGLRVGXXXXXXXXXXXXPEGIAVALPVYFATESKWQAFKLASLSGLAEPLGVVLVAYLFPSSLSPEILEGLLGAVGGVMAFLTLHEMLPLAFDYAGQKQAIKAVFIGMAVMSTSLYFLEISLPKEMSL
A9P0Y4_______________MDSQVMVALMLSLVGGASTSLGALFVVINPAPKLKVLGLLQGFAAGLMLSISFLDLAHNAINSIGFLKANLWFFGGVVVFAFIVNFIPEPTLVPSQNQADTSEK--YDGGKDLMKKHRRQVFYSGIITAIGISLHNFPEGMAVFLGSIKGLRVGLNLALAIALHNIPEGIAVALPVYFATESKWQAFKLASLSGLAEPLGVVLVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAIKAVFIGMAVMSTSLYFLEISLPKEMSL

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
84	25			75	0.996473
86			25	75	0.996473
87		75	25		0.996473
88			25	75	0.996473
89			25	75	0.996473
458	20		80		0.995493
535	14	85			0.999981
538	84			15	0.999986
709	11			88	0.923564
712			88	11	0.923564
724	20	80			0.995493
725		80		20	0.995493
726		80	20		0.995493
729	20		80		0.995493
730		20	80		0.995493
731		20	80		0.995493
732	20		80		0.995493
733		20	80		0.995493
735	20			80	0.995493
737		20		80	0.995493
738	20			80	0.995493
739		80		20	0.995493
745		20	80		0.995493
746	20	80			0.995493
969	16			83	0.994512
971			16	83	0.994512
973	83		16		0.994512
999	20			80	0.995493
1001			20	80	0.995493
1002			20	80	0.995493
1003			20	80	0.995493
1227		11		88	0.923564
1386	10			90	0.90298
1387	10		90		0.90298
1388	10			90	0.90298
1389	10			90	0.90298
1390	10	90			0.90298
1391	10			90	0.90298
1486	20			80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain