SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12582

Length: 1131 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene12582 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	4-coumarate--CoA ligase-like 5 n=3 Tax=Arabidopsis RepID=4CLL5_ARATH	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Acyl:coa ligase	-	-	6.218e-36	-

Source	ECs	Term	Type	e value	Identity
Sma3	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing).	EC:1.13.12.7	-	2.413e-20	-
Sma3	Ligases, Forming carbon-sulfur bonds, Acid--thiol ligases.	EC:6.2.1.-	-	9.506e-34	-

Source	KEGGs	Term	e value	Identity
Sma3	Geraniol degradation	00281	9.506e-34	%
Sma3	Tyrosine metabolism	00350	9.506e-34	%
Sma3	Benzoate degradation	00362	9.506e-34	%
Sma3	Fluorobenzoate degradation	00364	9.506e-34	%
Sma3	alpha-Linolenic acid metabolism	00592	9.506e-34	%
Sma3	Aminobenzoate degradation	00627	9.506e-34	%
Sma3	Propanoate metabolism	00640	9.506e-34	%
Sma3	Ethylbenzene degradation	00642	9.506e-34	%
Sma3	Carbon fixation pathways in prokaryotes	00720	9.506e-34	%
Sma3	Limonene and pinene degradation	00903	9.506e-34	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	9.506e-34	%
Sma3	Biosynthesis of plant hormones	01070	9.506e-34	%
Sma3	Metabolic pathways	01100	9.506e-34	%
Sma3	Biosynthesis of secondary metabolites	01110	9.506e-34	%

Source	Gene names
Sma3	4CLL2; 4CLL3; 4CLL4; 4CLL5; 4CLL6; 4CLL7; 4CLL8; 4CLL9; ACLL13; ACLL15; ACLL16; ACLL20; ACLL21; At1g20480; At1g20490; At1g20500; At1g20510; At4g05160; At5g38120; At5g63380; B1065G12.10; B1065G12.9; C17L7.80; F5M15.17; F5M15.18; F5M15.29; F5M15.30; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	fatty-acyl-CoA synthase activity	GO:0004321	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G20510.1	OPCL1 OPC-8:0 CoA ligase1 chr1:7103645-7105856 REVERSE LENGTH=546	48%
RefSeq	Arabidopsis thaliana	NP_973872.1	OPC-8:0 CoA ligase1 [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002300662.1	acyl:coa ligase [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP93

Fln msg: Overlapping hits, possible frame ERROR between 232 and 232, Distance to subject end: 133 aas, your sequence is shorter than subject: 377 - 548

Fln protein: ANYIFSHHHHTQQVASIDASSGLSLSYPALRQNVRALAAGLHGLGIRKGDVVLVISPNTIALPCIYLAILSIGAILxxANPLSTEAEIKKQAEDSKPVMVFTLPNLIKKVRATGLPFILIEGTTEEGLDSGCISTLNLLLQSDISGFPSVDIKQEDTATLLYSSGTTGKSKGVISTHRNLIAMISGVRNGRDDVEGGENICLCFIPLFHVFGFFYTLACIAAGSTMVFMPKFDLAEMLSAIQKYRVNSVPASPPILVALSKSPLVAKYVLTSLSSINCGGAPLGKDVIDNFTARFPTVQVLQGYGLTESSGAVAMTMTDEENGHYGTAGLLSANVEAKVVDTASGKAMPPNHKGELWLRGPTIMKGYLGNDEATTYI

Protein Length: 378

Fln nts: CGCCAACTATATTTTTTCCCATCACCACCACACGCAGCAGGTCGCCTCCATCGATGCCTCCAGTGGCCTCTCGCTCTCTTATCCCGCCCTCCGCCAAAATGTTAGAGCACTCGCTGCCGGACTGCATGGCCTGGGGATTCGAAAAGGCGACGTGGTATTGGTCATATCTCCCAATACCATCGCCCTTCCATGCATTTACCTCGCCATTCTCTCCATCGGAGCAATCCTGxxxxxxGCCAATCCGCTCAGCACAGAGGCCGAGATTAAGAAGCAGGCAGAGGATTCGAAACCGGTAATGGTCTTCACCCTACCAAATCTGATAAAAAAGGTCCGTGCAACCGGATTGCCATTCATTCTCATTGAGGGAACCACAGAGGAAGGCTTGGACTCGGGCTGTATTTCTACCTTAAACCTCCTCTTGCAGTCCGATATTAGCGGCTTCCCTTCAGTGGACATCAAGCAGGAGGACACTGCCACGCTTCTCTACTCGTCGGGGACAACGGGCAAGAGCAAGGGAGTCATCTCCACGCATAGAAATCTCATTGCCATGATATCAGGAGTTCGGAACGGTCGTGACGATGTGGAGGGAGGGGAGAATATATGTTTATGCTTCATCCCGCTGTTTCATGTTTTTGGGTTTTTCTATACACTTGCTTGCATTGCAGCTGGGAGTACCATGGTATTCATGCCCAAATTTGATTTGGCTGAAATGCTTTCGGCCATACAGAAGTACAGAGTGAACTCCGTGCCCGCTTCTCCACCCATTCTCGTCGCTTTAAGTAAGTCTCCTCTAGTTGCCAAGTACGTTTTGACTTCGCTAAGCTCGATAAACTGCGGTGGAGCTCCTCTTGGCAAAGACGTCATCGACAACTTCACTGCTCGATTTCCAACTGTTCAAGTTCTACAGGGTTATGGATTGACAGAGTCTAGCGGGGCCGTAGCCATGACTATGACGGATGAAGAAAACGGACATTATGGAACGGCAGGCTTGCTTTCAGCTAATGTAGAAGCCAAAGTGGTGGACACAGCCAGTGGCAAAGCTATGCCTCCCAACCATAAAGGCGAGCTCTGGTTGCGAGGACCTACAATCATGAAAGGTTATTTGGGTAATGATGAAGCAACTACATACATT

Fln Alignment:

Contig12582___YIFSHHHHTQQVASIDASSGLSLSYPALRQNVRALAAGLHGLGIRKGDVVLVISPNTIALPCIYLAILSIGAILTTANPLSTEAEIKKQAEDSKPVMVFTLPNLIKKVRATGLPFILIEGTTEEGLDSGCISTLNLLLQSDISGFPSVDIKQEDTATLLYSSGTTGKSKGVISTHRNLIAMISGVRNGRDDVEGGENICLCFIPLFHVFGFFYTLACIAAGSTMVFMPKFDLAEMLSAIQKYRVNSVPASPPILVALSKSPLVAKYVLTSLSSINCGGAPLGKDVIDNFTARFPTVQVLQGYGLTESSGAVAMTMTDEENGHYGTAGLLSANVEAKVVDTASGKAMPPNHKGELWLRGPTIMKGYLGNDEAT
B8LP93_______________YIFSLQHNMQQIAFIDGPSGTTLTYSALRLKVRALAAGLHGLGIRKGDVVLVISSNSIALPCIHLAILSIGAILTTANPLSTEREIVTQVKDSKPVIAFTLSHLIHKLRATQIPIILIQGT----LESRCVTTLHDLLQSDLKDMPSIDIKQDDTATLLYSSGTTGKSKGVVSTHGNYIATIAGNRV-RYETEGCK-MYICSMPLFHIYGLRFLVCTLAAGATIVVPPKFDMEEILRSIERYRVTLLPTVPSVLAALAKSTGAQKYDLGSLQQISLGGAPLGKDVTLTFNAKFPRIQIRQGYGLTETTGAIAYTNSDEENRRNGTVGLLSDVVEAKVVDPDSAKPLPPNQRGELWLRGPTVMKGYFGNEHAT

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
562		85	14		0.993533
568		14		85	0.993533
571	14	85			0.993533
622		12		87	0.992554
623		12		87	0.992554
624		12	87		0.992554
625	12	87			0.992554
707		83	16		0.994512
713	16		83		0.994512
716	83			16	0.994512
717			83	16	0.994512
723			80	20	0.995493
729	20		80		0.995493
739		80		20	0.995493
751	75	25			0.996473
752	75	25			0.996473
755	25	75			0.996473
977	66		33		0.997452
1016		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain