SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12578

Length: 3097 nt

UniGene Fasta

>sp_v3.0_unigene12578
CGTCGTGACCTTGGCTGTCACTCAGCTTTTTATTTTTATTTTTCGAATCAGCCGTATTTTGTTCGGAAATATGATTCGACTCCCCGTCTTCAAAATTTCGGCGGTTTTTGAGCTCGGAATGGATTGAAACCACGGTCTATAGCGTTTGTTTTGGTTTTGCTCCTCTGTAATGCATGATTTATCTTGATTCGACTACAGCTTTAGGGATTTGTGTTGTGTCTGTCTATTTTCGAAAATAATTGTGCTCTCTTTATTCTTTTTCCTCTGTGCTGTGGTGCTGCTTTAATGTTTTTTTGGGGTTATAGAAGATTCGAGGTTTTCCGCATTTGTTAAATAGTTTGTATCGCGGCCTTTTGTATCACGGCTGTTTTCTTGAAAGTTGTGATGATTTTACTGGCTCGGTGTTGTGCATTTTTCTTTTATTTTTGGACTGGTTTGATCATGGCTTCGGAGATTTATTGATTGTACGGTTGAAGATTGTTTTAAAACTGCGGTTCGAAGCGATCCGCGATAAAGATTTGCCTCCAATTCGACTGGTTTTGGTTTTAAAGGCTTACATGATAATGAATTGAAGATTTTAAAGTGGGTTTCTAATTACAACCGTTGTTGATGTCATCTAGGCTTTAACGGCTGCATTACTTGCAACTTTGAAGGATGTCGATAGAGCCGTAAGCCATTTCTTCAATTTTGGTTTGCCTAAGGTTTTCCTTCTTAAAGTTTTGGAAGGTCTTGTTACGTCTGAAGCTTTTCGTGCGGCATGGCTTGTTGCGTTTCCTTTAATATGTGGCAAATTTGGGACTGGTTATTATATGTTGTGTGAATGGCGGGATGGAGATTTTGAATCCACGTTTCGCAGCAGTTCCCCAAAACTGGTCCATTTGCGCTCACTAAACCCTACTTTGAAGCATTGCATCCTTTCCGTTTCTGCCGGTGAGTGTTTTACGTTTAGTTAGTGGTGTATAAAGGAGTGCCATTTAAGCACATGCAGTGAAGCCTTATTTTTGAAGTTTTATTGCCATTCCCCCAATTACCTTTCCCAATCATTTGCATTTTTTTTTCATGAGCTTTTCACCGTTTACAGTATTATGTTAGGTTTTTGTATTTCGAGAACTTTGTCTCTCCGAATCCCGTGATTGTTGCTTAATCGATATTTAAAGGATGCTGCTTACAAGATAATCGCAAAAACTTTGTCCGGTTAAGGACTAAGTGTGTGTATTCGTAGGTTTAGGGTGCGGAATTAGTGTAATTTCTTCACCCTGCAAGATAAATACAACAGTGATTGGACGAGGATGACATTGGTCCCATGTCCTCGAACGATCCCAGGATTGAATGAGGTCATAAGTTGCTTGAATCCTGAAGTGTATGGAGGGATGAGAAAGTGTGATTTTATTCTGTAAAGAAAGCTGTTCAGACTTGATGGATCCTAGAGCTTTTGTAAGAGTATCAGTGGGAGCGCTTGGATTAAGAATACCCGTTGCATCAACAGACACTAGGAGCGGTGTGGAAGCGTTGCCCTCTCCTTGTCTCTGCGAAGTTCGGCTTAGAGGATTTCCTGCGCAAACAGCATCAGTTCCCTTGGTTACACCTTCTGCCGGTGGCCCCGATCTTCACAGTATTGCTGCAAGATTCTATTTAGAAGAAGCTGATTTGTGCAAGTTGTCAAGTCCCGCCTGTTTCCAGTCATCCCAAGCGTATTTGGAATTAGTGATCTTTACAGGAAAACATGGATGTCACGTAGGGAGTAGTAGTAGTAAGCAGATTGGGACCTTCAGATTGCAGGTAGGACCAGAATGGGGAGAGGGAAAGGCAGTGCAGCTTTACAATGGATGGACTAGCATAGGCAAAAGCAAGGCGAAGGGTGGAGGCCCCGGGGCAGAGCTCCATGTGAGAATTAGGATTGAGCCTGATCCCCGATACATCTTTCAGTTTGAAGACGAAACTGCATCTAGCCCCCAGATTGTGCAGCTGCAAGGCAATGTGAGGCAACCGATTTTCAGTTGTAAATTCAGCCGAGACAGAGGATGCCGTTCACGTTTCACTCAACTTGATAGTACTGCAAATGGTTGGTGTATTCCTCAAAACGGTGAAAAGGATAGTGAAAGAAGGGAGCGGAAAGGATGGTTGGTTATGATTCATGATCTTTCTGGATCTGCTGTAGCTGCTGCGTCTATGGTAACCCCCTTTGTGCCTTCAACGGGTTCTGATTGTGTTTCTCGATCTAATCCTGGGGCATGGTTGATTTTGCGGCCAGACTCTTCTGGTGTTGATACCTGGCACCCTTGGGGTAGGCTGGAAGCATGGAGAGAGCAAGGTGGGAAGGATTATATCGGATGCAGGTTTCAGCTAGTTGCAGAAGGTGGTGCTCTGGCAGGAGTAAGTAATGGAATTGTTGTTTCCGAGACCCGTATTAATGCTCACAAGGGTGGAGAATTCCTAATTGACACATCAAAAGTGACACTTTCAGAATCTCCAATTCCAAGTCCTCATAGCAGTGGCGATTTTGCATTCAATTTTGGTCTGCAACTTTTAGGAGGTTTTGTAATGAACTGTCATGTACAAGGTGAAGGTAGGAGCAGCAAGCCTACTGTTCAACTGGCTATGAGGCATATAACTTGCGTAGAGGATGCTGCAGTTTTCATGGCACTAACTGCAGCCGTTGACTTGAGCATTGAAGCCTGCAAGCCTTTCAGTAGGAAACTGAAGAGGGGTATCCGAAATTGAAACAAGAATGACTTCACAACTTGCTTTCGCAATTCCCTCCATTTTTGATGTCTTTTAGATACCGAGTCTTTTCTTCAAACAGAACACCATATAATGGTGAGCCTGGATGACATATTCAGATGGTAACTTCTTTACCATGGTCTGTCTATATACTAGCAATTTTGCCAGTAGCTGCTTATTTCTCATTCTGGGTATATCATTGTATATACATCCTGTGTTGGCATCTTACTGTACATTTTCGAGGGTTATCTTGTTTCCGTTGATTGCGGATCTTGATGTTCATATGTATAATGCGTTTTCTGTGAAAGCAAAGCGGTAGTTTTTGAAATTAATAAGGCAAAGTATAAATGACGGCTTATGCTTTTATGCTTAGTTC

Ace file of the UniGene sp_v3.0_unigene12578

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1005 domain containing protein	-	-	0.0	44%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%

Source	Gene names
Sma3	At1g10020; At4g29310; At5g17640; GSVIVT00015022001; GSVIVT00016640001; GSVIVT00022959001; GSVIVT00038592001; K10A8_120; LOC_Os03g56220; OJ1118_D07.19; OJ1449_C01.2; OJ9990_A01.119; OSJNBb0094O03.10; Os01g0740400; Os03g0773000; Os07g0133500; Os08g0163500;

Source	GOs	Term	Type	e value	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1005	IPR010410	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G17640.1	Protein of unknown function (DUF1005) chr5:5811047-5812429 REVERSE LENGTH=432	57%
RefSeq	Arabidopsis thaliana	NP_197266.1	uncharacterized protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002319218.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6I5F9

Fln msg:

Fln protein: MDPRAFVRVSVGALGLRIPVASTDTRSGVEALPSPCLCEVRLRGFPAQTASVPLVTPSAGGPDLHSIAARFYLEEADLCKLSSPACFQSSQAYLELVIFTGKHGCHVGSSSSKQIGTFRLQVGPEWGEGKAVQLYNGWTSIGKSKAKGGGPGAELHVRIRIEPDPRYIFQFEDETASSPQIVQLQGNVRQPIFSCKFSRDRGCRSRFTQLDSTANGWCIPQNGEKDSERRERKGWLVMIHDLSGSAVAAASMVTPFVPSTGSDCVSRSNPGAWLILRPDSSGVDTWHPWGRLEAWREQGGKDYIGCRFQLVAEGGALAGVSNGIVVSETRINAHKGGEFLIDTSKVTLSESPIPSPHSSGDFAFNFGLQLLGGFVMNCHVQGEGRSSKPTVQLAMRHITCVEDAAVFMALTAAVDLSIEACKPFSRKLKRGIRN*

Protein Length: 436

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTTTTATTTTTATTTTTCGAATCAGCCGTATTTTGTTCGGAAATATGATTCGACTCCCCGTCTTCAAAATTTCGGCGGTTTTTGAGCTCGGAATGGATTGAAACCACGGTCTATAGCGTTTGTTTTGGTTTTGCTCCTCTGTAATGCATGATTTATCTTGATTCGACTACAGCTTTAGGGATTTGTGTTGTGTCTGTCTATTTTCGAAAATAATTGTGCTCTCTTTATTCTTTTTCCTCTGTGCTGTGGTGCTGCTTTAATGTTTTTTTGGGGTTATAGAAGATTCGAGGTTTTCCGCATTTGTTAAATAGTTTGTATCGCGGCCTTTTGTATCACGGCTGTTTTCTTGAAAGTTGTGATGATTTTACTGGCTCGGTGTTGTGCATTTTTCTTTTATTTTTGGACTGGTTTGATCATGGCTTCGGAGATTTATTGATTGTACGGTTGAAGATTGTTTTAAAACTGCGGTTCGAAGCGATCCGCGATAAAGATTTGCCTCCAATTCGACTGGTTTTGGTTTTAAAGGCTTACATGATAATGAATTGAAGATTTTAAAGTGGGTTTCTAATTACAACCGTTGTTGATGTCATCTAGGCTTTAACGGCTGCATTACTTGCAACTTTGAAGGATGTCGATAGAGCCGTAAGCCATTTCTTCAATTTTGGTTTGCCTAAGGTTTTCCTTCTTAAAGTTTTGGAAGGTCTTGTTACGTCTGAAGCTTTTCGTGCGGCATGGCTTGTTGCGTTTCCTTTAATATGTGGCAAATTTGGGACTGGTTATTATATGTTGTGTGAATGGCGGGATGGAGATTTTGAATCCACGTTTCGCAGCAGTTCCCCAAAACTGGTCCATTTGCGCTCACTAAACCCTACTTTGAAGCATTGCATCCTTTCCGTTTCTGCCGGTGAGTGTTTTACGTTTAGTTAGTGGTGTATAAAGGAGTGCCATTTAAGCACATGCAGTGAAGCCTTATTTTTGAAGTTTTATTGCCATTCCCCCAATTACCTTTCCCAATCATTTGCATTTTTTTTTCATGAGCTTTTCACCGTTTACAGTATTATGTTAGGTTTTTGTATTTCGAGAACTTTGTCTCTCCGAATCCCGTGATTGTTGCTTAATCGATATTTAAAGGATGCTGCTTACAAGATAATCGCAAAAACTTTGTCCGGTTAAGGACTAAGTGTGTGTATTCGTAGGTTTAGGGTGCGGAATTAGTGTAATTTCTTCACCCTGCAAGATAAATACAACAGTGATTGGACGAGGATGACATTGGTCCCATGTCCTCGAACGATCCCAGGATTGAATGAGGTCATAAGTTGCTTGAATCCTGAAGTGTATGGAGGGATGAGAAAGTGTGATTTTATTCTGTAAAGAAAGCTGTTCAGACTTG_-_ATGGATCCTAGAGCTTTTGTAAGAGTATCAGTGGGAGCGCTTGGATTAAGAATACCCGTTGCATCAACAGACACTAGGAGCGGTGTGGAAGCGTTGCCCTCTCCTTGTCTCTGCGAAGTTCGGCTTAGAGGATTTCCTGCGCAAACAGCATCAGTTCCCTTGGTTACACCTTCTGCCGGTGGCCCCGATCTTCACAGTATTGCTGCAAGATTCTATTTAGAAGAAGCTGATTTGTGCAAGTTGTCAAGTCCCGCCTGTTTCCAGTCATCCCAAGCGTATTTGGAATTAGTGATCTTTACAGGAAAACATGGATGTCACGTAGGGAGTAGTAGTAGTAAGCAGATTGGGACCTTCAGATTGCAGGTAGGACCAGAATGGGGAGAGGGAAAGGCAGTGCAGCTTTACAATGGATGGACTAGCATAGGCAAAAGCAAGGCGAAGGGTGGAGGCCCCGGGGCAGAGCTCCATGTGAGAATTAGGATTGAGCCTGATCCCCGATACATCTTTCAGTTTGAAGACGAAACTGCATCTAGCCCCCAGATTGTGCAGCTGCAAGGCAATGTGAGGCAACCGATTTTCAGTTGTAAATTCAGCCGAGACAGAGGATGCCGTTCACGTTTCACTCAACTTGATAGTACTGCAAATGGTTGGTGTATTCCTCAAAACGGTGAAAAGGATAGTGAAAGAAGGGAGCGGAAAGGATGGTTGGTTATGATTCATGATCTTTCTGGATCTGCTGTAGCTGCTGCGTCTATGGTAACCCCCTTTGTGCCTTCAACGGGTTCTGATTGTGTTTCTCGATCTAATCCTGGGGCATGGTTGATTTTGCGGCCAGACTCTTCTGGTGTTGATACCTGGCACCCTTGGGGTAGGCTGGAAGCATGGAGAGAGCAAGGTGGGAAGGATTATATCGGATGCAGGTTTCAGCTAGTTGCAGAAGGTGGTGCTCTGGCAGGAGTAAGTAATGGAATTGTTGTTTCCGAGACCCGTATTAATGCTCACAAGGGTGGAGAATTCCTAATTGACACATCAAAAGTGACACTTTCAGAATCTCCAATTCCAAGTCCTCATAGCAGTGGCGATTTTGCATTCAATTTTGGTCTGCAACTTTTAGGAGGTTTTGTAATGAACTGTCATGTACAAGGTGAAGGTAGGAGCAGCAAGCCTACTGTTCAACTGGCTATGAGGCATATAACTTGCGTAGAGGATGCTGCAGTTTTCATGGCACTAACTGCAGCCGTTGACTTGAGCATTGAAGCCTGCAAGCCTTTCAGTAGGAAACTGAAGAGGGGTATCCGAAATTGA___AACAAGAATGACTTCACAACTTGCTTTCGCAATTCCCTCCATTTTTGATGTCTTTTAGATACCGAGTCTTTTCTTCAAACAGAACACCATATAATGGTGAGCCTGGATGACATATTCAGATGGTAACTTCTTTACCATGGTCTGTCTATATACTAGCAATTTTGCCAGTAGCTGCTTATTTCTCATTCTGGGTATATCATTGTATATACATCCTGTGTTGGCATCTTACTGTACATTTTCGAGGGTTATCTTGTTTCCGTTGATTGCGGATCTTGATGTTCATATGTATAATGCGTTTTCTGTGAAAGCAAAGCGGTAGTTTTTGAAATTAATAAGGCAAAGTATAAATGACGGCTTATGCTTTTATGCTTAGTTC

Fln Alignment:

Contig12578___MDPRAFVRVSVGALGLRIP-VASTDTRSGVEALPSPCLCEVRLRGFPAQTASVPLVTPSAGGPDLHSIAARFYLEEADLCKLSSPACFQSSQAYLELVIFTGKHGCHVGSSSSKQ-IGTFRLQVGPEWGEGKAVQLYNGWTSIXXXXXXXXXXXXELHVRIRIEPDPRYIFQFEDETASSPQIVQLQGNVRQPIFSCKFSRDRGCRSRFTQLDSTANGWC-IPQNGEKDSERRERKGWLVMIHDLSGSAVAAASMVTPFVPSTGSDCVSRSNPGAWLILRPDSSGVDTWHPWGRLEAWREQGGKDYIGCRFQLVAEGGALAGVSNGIVVSETRINAHKGGEFLIDTSKV--TLSESPIPSPHSSGDFAFNFGLQLLGGFVMNCHVQGEGRSSKPTVQLAMRHITCVEDAAVFMALTAAVDLSIEACKPFSRKLKRG
F6I5F9_______________MDPQAFIRLSIGSLGLRIPGPALNAAKSGIHAVPSPCSCEIRLRGFPVQTSSVPLVSSPEATPDSHSIASSFYLEESDLKALLAPGCFYAPHACLEIVVFTGRKGSHCGVGIKRQQIGTFKLEVGPEWGEKKPVILFHGWIGIGKNKQESGKPGAELHLRVKLDPDPRYVFQFEDVATSSPQIVQLQGTIKQPIFSCKFSRDR-----VSQVDPLSTYWSGSADSSEQETERRERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRPESWQPWGKLEAWRERGIRDSICCRFHLLSEGQD----GGELLMSEIFINAEKGGEFFIDTDRQVRAAATTPIPSPQSSGDFAAL--APAVGGFVMSCRVQGEGKSSKPLVQLAIRHITCVEDAAIFMALAAAVDLSIEACRPFRRKFRRG

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
465		20	80		0.995493
466	80		20		0.995493
468		20		80	0.995493
473		20	80		0.995493
474			80	20	0.995493
476			20	80	0.995493
478	80	20			0.995493
479	80			20	0.995493
481	80			20	0.995493
482		20		80	0.995493
483	20			80	0.995493
484		20	80		0.995493
486	20			80	0.995493
525			80	20	0.995493
1012		37		62	1.0
1023	12			87	0.992554
1665			14	85	0.993533
1667			14	85	0.993533
1727	83		16		0.994512
1792	87		12		0.992554
2045	81			18	0.999994
2101			14	85	0.993533
2104			14	85	0.993533
2203	16		83		0.994512
2226		75		25	0.996473
2378			75	25	0.996473
2562			14	85	0.993533
2563	85		14		0.993533
2746	90		10		0.90298
2747	90			10	0.90298
2749			10	90	0.90298
2753		10		90	0.90298
2756		90	10		0.90298
2759	90			10	0.90298
2760	90		10		0.90298
2764	10	90			0.90298
2786			90	10	0.90298
2926	18	81			0.999994
2940		81		18	0.999994
2945			81	18	0.999994
3009		87		12	0.992554
3040	50		50		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1741	1753	AGT AGT AGT AGT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain