SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12554

Length: 3799 nt

UniGene Fasta

>sp_v3.0_unigene12554
CTCCTGACATGCTGCCTCTGCCATATAACGCATTTTTCCAAGCCGTTATGAGATGTCTGTCTTCCATATTCTATTTATGAGACCTGCGCTCCATTTAAAAGCGCTGCACCACCTGCGATGTACCTTTATTCCCTGACACGGTATCTCTGCGATGCACATGTTATTTTTAGCACTGGCCTGGAGAATCCTCTGAATCGCTGAGTAGAATGCCCTTGAGATCAGCTGGACAACCTGCAATTTGACCATCTGGACTGTAGTAAGATTCTGAAAGCGTTGTGCCATGCATTAAACGTTGTTTTGGTACGCTGCCCCTATTCGTTTACCGTCCCATATTCTGCCATAATGCCTGACATGGTTATCGCCTAGCATGGAGATGCTGCCGGAAGGGAAGAACAAAGCGAAGAACACCTGAAGGAAGGAGAGCAGACCCTCAGCCATACATTGTGTCGGTTCGTGCGTCAAAACATTTGGCCGGTCATCGATCGGCCGACTCCGAGGTTGCTGCAGATCAACGGAGGAGCTCGAGGCCTTCAATTTGAGCCTTTAATTGACTGTTGCCGTTGCAGATTTTCCATTTTTTTGTTTTGTTTTCTGAAGAGGAGGTCGATATTGCTGGCACTCAATTGCGCCTTTGGTAGCTGGATTTTAATGCATATTTTTATGTCCAGGACTCATTTCATATTCGGCTGAGCTTTCACGTTTTCCAGGGTTTATTGAACAGGATTCGATCTTTAAGCCGATAAAAGGCTTGAATGTAACAGAGAATTGTCTTCTTGGATTGGCTTTAACGGGAAGCCCGCTATAAGTTCGTTTTAAAAGTTTTATTCGAAGCCCTAGATGAGAATTATCAGGTCAGGGCCGCCATCTATGCTGCGAGTTTTGTTAATGCTGTACTAGAACCGAAGCTAAGGCTGGACAGTCAGGCAAAGCGCAGGAGATATACAATTCAAGGAGAATAATAATACGCAGCAGTTGGAAGGAATATGATACCTTGAAACTTGGATTTTTATTTGCATCATTAATTTATCATTTCCAGGGTGGGCCTTGGAGTGCTGTAGCACTACATTCTTTTTGTTGAGGATTTGTTTCGGGGCCCTGAGTTCTTTTCTCTATGCCTCTCTTCAAGAGGAAACCGTTTCCTCTTGCTGAACCTCCGGAAGACATTAAGCCCAATGAGCAGGTGTTTCAAATTCGATTTACGAAAGAAATCTTCAGGGATTATCAAGAATATTTGGAACGAATAAATCTTTACCGCCAGAGGGTATGGATATGTAAAGTGTCAGGAAAGACAAATCTAACCTACGAAGAGGCTCTTGTCTCTGAGCGTCGTGCAACAGAGAAGGTTCAGCACTTTCCGAAGGAGTTAATTGGACCAGTTTTGCGTATGGTCCAGTTCAAGACACTTAGAGTTAAGGAGCTTGTTAGTAAAATATCAAACAGCATCAAGGACTTTTATCTGGTAGGTGAAGAAGTCACAGGTCGGAAGAAAGATTCAGTAATCCCCTGTAAGATTCTGAAGGTCATCCAGGAGATTGATGATGAGGATGGATCCTTTAAGTATGAAGTTGGTTGGCTTGACAAAAATAAGAAAGTGACTGATACATCCATCGAGAATGCGGAAGCTCTGGTTCGAAAGAAGCCTCTTGTTACACAAGATGTCTTAAAGTCCTTTATCAGAGAATCAACTTCGTCCAATACGCCTTGGGTAATTCATGACGAATTGGCACGGAAGTACAGGATCTCCACTGACCCCCCTGAGGATCTCAAGGACAAAATAATTAAGCAGGAGAAACAACACAATCTGCCAAGTGATGTAAACAAAAGCTCTGCACAAAACGTGGAAAATGGGGATCCAAAAAGCAAAAAGCGTAAAACTAAGGAGACAGAAGAGTTGGAGGAAGCACCTAAACCAAAGAAAAAGAAGGAGAAAGTTGAAGAGCAGCCAAAAGTGGAACCTATTAAGTATCCCATAGAGGATTCCTTGGTGCAGCCTGGTCCAGACGATCCTGCTTTTACAGAGCGGCCATGTGAAGCAACAGATTTTCTTACACCAATGGATTGTGTAGGAGATATTCTGATGGTCTGGGACTTCTGCACTTCTTTTGGGAAGGCACTTCATCTGTGGCCTTTCTCCCTTGAGGATTTTGAAAAGGCTATCGAGTACACTGAAGGTGATGTGACGCTCTTGGCAGAGACACATTATGCTCTTCTCCGGATTGTTGCAAAAGATTCCAGTGCCTACCAGGATTTAATTCAGAAGAGAAAATCTAAGCTATCAATACAAAATTGGCAGGACCATCTCTGTTATTTTTTGGAAGCAGAAGAAGTGGGAAAGCTTTTGGGTCATCTGGAAACAATTAAGGGTGGTGTTTACAGCGAGCTAGATCCACGTTCAAAGTTAGACATTTTGCATGAGTTAGTTAACAGAGCTATTACTTCTGATGTTATCAGAGGTCAGCTAGATGAATACATTGAAGAACGGCATGCCCTTGCAGCTAGAAAACGTGAGGAGCAAATAGAGGAATCTAGGAGGAAAAAAGAACATCTTAAACAGCTAAATGGCCAAGGTAAGGATGATCCAGATGAAAATGCTACTAAAGAAATTGGAGATAATGATGGCGCTATGGATGCTTCAGATACAGAAGTGCAAAAATGTGCCCCTGGAGAAAATGGATTGGTCGCAGATGATGCTGTAAGGGAAGGTTCAAATGAAAATGGTGTTAAAGATATACCAGAAATTCATTATGAAAATGGTGATGGCAATCATTCTCAGACAACATTGAGACAAGCTGCTTTAAAGCAAAAATTGGATGCAAAAGCTGCGGAAGAAAGAGAGAAAGAAATGGCCAGAACCGAAGAACAAAAGAAAATGCAAGAGAAAAGAAAGGCAAAAGCTGAGATAATGAAGGAGCAGAAGCTTCGGGAGCAGAGGGCATTAGAGATGCAGAAGAGACAAGAACAACTTGATCGGGAAATAGAAAAACGTTTCATTCGGACAAATTCATTAGGGAGGGATAAGGCTTACAGCAGGTATTGGTTTTTCCGTAGAGAGGGGCGAATTTTTGTTGAAAAGCAAGATTCTACTTGGTGGGGCTACTACAGTGCAAAGGAAGAGCTTGATGCGTTAATTGGCTCCCTGAATCCAAAGGGTGAGAGAGAGAGGGCTTTACAAAGGCAGTTAGAAAAGCATTACTTAAAGATTAGTACTGCAATGCAGAGGAGGTCGAAGGACATTGCACAGAAGTTTGCAATAGAAGAAGCAGCTTTACGGCGTTCCACTCGTGTTCGCTCACAACCAAAGGCAGCAGCTACAGGATTTTTGGCATATGTCAATAAACATAGAGGCTAATGGTCTAGCTCTTGAGGCTGCCTGAATGACATATTTTCCATATTTTGAGAATTGATGCTAGTAGCGCGTTACTGGTCAAAACTCACAGCCAGATATGAAGTGTGGAATCGGATAAGAAGTCAGAGAAGATGGCTTACCATCAAAATTTTGATAAGCTTTTCTGTAAAACACTTGAAGTTATTTTTGTAAAGTATTCTAAAACTCAAATTTATTCTGCCCAACATCATTCCTAAATTGTGGCCCATTTTGCTGTCTCTGTAAAAGCTACTGTTTAGATTCTGATGATGCAACTAAGAGATTTAGTAATCTTCTGTTGTTTGAAAAGAAATGATAAATCTCTTTAAATGGTGATTAAATCCTCCTCTGGTTAGACAGATTAGAGTTGGTGTAGTGGTTCTGGTTGCACCAACGAGTTGTCATTTCTTTGTGAACTTTTTCAATTTCATTTTA

Ace file of the UniGene sp_v3.0_unigene12554

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DDT domain-containing protein [Arabidopsis thaliana] gb\|AED91331.1\| DDT domain-containing protein [Arabidopsis thaliana]	-	-	0.0	39%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	47%
Sma3	ATP-dependent chromatin assembly factor	-	-	1.318e-09	-

Source	Gene names
Sma3	At5g08630; GSVIVT00019226001; H0525C06.6; NFE1501; NFE1502; NFE901; NFE902; OJ000114_01.10; OJ1008_F08.22; Os02g0556900; OsI_07656; OsI_16003; OsJ_07138; OsJ_14909; OsJ_14910; PHYPADRAFT_177158; PHYPADRAFT_60779; POPTRDRAFT_247688; POPTRDRAFT_269261; RCOM

Source	InterPros	Term	Type	Identity
Sma3	DDT domain	IPR004022	-	-
Sma3	WSTF/Acf1/Cbp146	IPR013136	-	-
Sma3	DDT domain, subgroup	IPR018500	-	-
Sma3	DDT domain superfamily	IPR018501	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002325278.1	nucleosome/chromatin assembly factor group, partial [Populus trichocarpa]	0.0	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SWL0

Fln msg: your sequence is longer than subject: 746 - 697

Fln protein: MPLFKRKPFPLAEPPEDIKPNEQVFQIRFTKEIFRDYQEYLERINLYRQRVWICKVSGKTNLTYEEALVSERRATEKVQHFPKELIGPVLRMVQFKTLRVKELVSKISNSIKDFYLVGEEVTGRKKDSVIPCKILKVIQEIDDEDGSFKYEVGWLDKNKKVTDTSIENAEALVRKKPLVTQDVLKSFIRESTSSNTPWVIHDELARKYRISTDPPEDLKDKIIKQEKQHNLPSDVNKSSAQNVENGDPKSKKRKTKETEELEEAPKPKKKKEKVEEQPKVEPIKYPIEDSLVQPGPDDPAFTERPCEATDFLTPMDCVGDILMVWDFCTSFGKALHLWPFSLEDFEKAIEYTEGDVTLLAETHYALLRIVAKDSSAYQDLIQKRKSKLSIQNWQDHLCYFLEAEEVGKLLGHLETIKGGVYSELDPRSKLDILHELVNRAITSDVIRGQLDEYIEERHALAARKREEQIEESRRKKEHLKQLNGQGKDDPDENATKEIGDNDGAMDASDTEVQKCAPGENGLVADDAVREGSNENGVKDIPEIHYENGDGNHSQTTLRQAALKQKLDAKAAEEREKEMARTEEQKKMQEKRKAKAEIMKEQKLREQRALEMQKRQEQLDREIEKRFIRTNSLGRDKAYSRYWFFRREGRIFVEKQDSTWWGYYSAKEELDALIGSLNPKGERERALQRQLEKHYLKISTAMQRRSKDIAQKFAIEEAALRRSTRVRSQPKAAATGFLAYVNKHRG*

Protein Length: 747

Fln nts: CTCCTGACATGCTGCCTCTGCCATATAACGCATTTTTCCAAGCCGTTATGAGATGTCTGTCTTCCATATTCTATTTATGAGACCTGCGCTCCATTTAAAAGCGCTGCACCACCTGCGATGTACCTTTATTCCCTGACACGGTATCTCTGCGATGCACATGTTATTTTTAGCACTGGCCTGGAGAATCCTCTGAATCGCTGAGTAGAATGCCCTTGAGATCAGCTGGACAACCTGCAATTTGACCATCTGGACTGTAGTAAGATTCTGAAAGCGTTGTGCCATGCATTAAACGTTGTTTTGGTACGCTGCCCCTATTCGTTTACCGTCCCATATTCTGCCATAATGCCTGACATGGTTATCGCCTAGCATGGAGATGCTGCCGGAAGGGAAGAACAAAGCGAAGAACACCTGAAGGAAGGAGAGCAGACCCTCAGCCATACATTGTGTCGGTTCGTGCGTCAAAACATTTGGCCGGTCATCGATCGGCCGACTCCGAGGTTGCTGCAGATCAACGGAGGAGCTCGAGGCCTTCAATTTGAGCCTTTAATTGACTGTTGCCGTTGCAGATTTTCCATTTTTTTGTTTTGTTTTCTGAAGAGGAGGTCGATATTGCTGGCACTCAATTGCGCCTTTGGTAGCTGGATTTTAATGCATATTTTTATGTCCAGGACTCATTTCATATTCGGCTGAGCTTTCACGTTTTCCAGGGTTTATTGAACAGGATTCGATCTTTAAGCCGATAAAAGGCTTGAATGTAACAGAGAATTGTCTTCTTGGATTGGCTTTAACGGGAAGCCCGCTATAAGTTCGTTTTAAAAGTTTTATTCGAAGCCCTAGATGAGAATTATCAGGTCAGGGCCGCCATCTATGCTGCGAGTTTTGTTAATGCTGTACTAGAACCGAAGCTAAGGCTGGACAGTCAGGCAAAGCGCAGGAGATATACAATTCAAGGAGAATAATAATACGCAGCAGTTGGAAGGAATATGATACCTTGAAACTTGGATTTTTATTTGCATCATTAATTTATCATTTCCAGGGTGGGCCTTGGAGTGCTGTAGCACTACATTCTTTTTGTTGAGGATTTGTTTCGGGGCCCTGAGTTCTTTTCTCT_-_ATGCCTCTCTTCAAGAGGAAACCGTTTCCTCTTGCTGAACCTCCGGAAGACATTAAGCCCAATGAGCAGGTGTTTCAAATTCGATTTACGAAAGAAATCTTCAGGGATTATCAAGAATATTTGGAACGAATAAATCTTTACCGCCAGAGGGTATGGATATGTAAAGTGTCAGGAAAGACAAATCTAACCTACGAAGAGGCTCTTGTCTCTGAGCGTCGTGCAACAGAGAAGGTTCAGCACTTTCCGAAGGAGTTAATTGGACCAGTTTTGCGTATGGTCCAGTTCAAGACACTTAGAGTTAAGGAGCTTGTTAGTAAAATATCAAACAGCATCAAGGACTTTTATCTGGTAGGTGAAGAAGTCACAGGTCGGAAGAAAGATTCAGTAATCCCCTGTAAGATTCTGAAGGTCATCCAGGAGATTGATGATGAGGATGGATCCTTTAAGTATGAAGTTGGTTGGCTTGACAAAAATAAGAAAGTGACTGATACATCCATCGAGAATGCGGAAGCTCTGGTTCGAAAGAAGCCTCTTGTTACACAAGATGTCTTAAAGTCCTTTATCAGAGAATCAACTTCGTCCAATACGCCTTGGGTAATTCATGACGAATTGGCACGGAAGTACAGGATCTCCACTGACCCCCCTGAGGATCTCAAGGACAAAATAATTAAGCAGGAGAAACAACACAATCTGCCAAGTGATGTAAACAAAAGCTCTGCACAAAACGTGGAAAATGGGGATCCAAAAAGCAAAAAGCGTAAAACTAAGGAGACAGAAGAGTTGGAGGAAGCACCTAAACCAAAGAAAAAGAAGGAGAAAGTTGAAGAGCAGCCAAAAGTGGAACCTATTAAGTATCCCATAGAGGATTCCTTGGTGCAGCCTGGTCCAGACGATCCTGCTTTTACAGAGCGGCCATGTGAAGCAACAGATTTTCTTACACCAATGGATTGTGTAGGAGATATTCTGATGGTCTGGGACTTCTGCACTTCTTTTGGGAAGGCACTTCATCTGTGGCCTTTCTCCCTTGAGGATTTTGAAAAGGCTATCGAGTACACTGAAGGTGATGTGACGCTCTTGGCAGAGACACATTATGCTCTTCTCCGGATTGTTGCAAAAGATTCCAGTGCCTACCAGGATTTAATTCAGAAGAGAAAATCTAAGCTATCAATACAAAATTGGCAGGACCATCTCTGTTATTTTTTGGAAGCAGAAGAAGTGGGAAAGCTTTTGGGTCATCTGGAAACAATTAAGGGTGGTGTTTACAGCGAGCTAGATCCACGTTCAAAGTTAGACATTTTGCATGAGTTAGTTAACAGAGCTATTACTTCTGATGTTATCAGAGGTCAGCTAGATGAATACATTGAAGAACGGCATGCCCTTGCAGCTAGAAAACGTGAGGAGCAAATAGAGGAATCTAGGAGGAAAAAAGAACATCTTAAACAGCTAAATGGCCAAGGTAAGGATGATCCAGATGAAAATGCTACTAAAGAAATTGGAGATAATGATGGCGCTATGGATGCTTCAGATACAGAAGTGCAAAAATGTGCCCCTGGAGAAAATGGATTGGTCGCAGATGATGCTGTAAGGGAAGGTTCAAATGAAAATGGTGTTAAAGATATACCAGAAATTCATTATGAAAATGGTGATGGCAATCATTCTCAGACAACATTGAGACAAGCTGCTTTAAAGCAAAAATTGGATGCAAAAGCTGCGGAAGAAAGAGAGAAAGAAATGGCCAGAACCGAAGAACAAAAGAAAATGCAAGAGAAAAGAAAGGCAAAAGCTGAGATAATGAAGGAGCAGAAGCTTCGGGAGCAGAGGGCATTAGAGATGCAGAAGAGACAAGAACAACTTGATCGGGAAATAGAAAAACGTTTCATTCGGACAAATTCATTAGGGAGGGATAAGGCTTACAGCAGGTATTGGTTTTTCCGTAGAGAGGGGCGAATTTTTGTTGAAAAGCAAGATTCTACTTGGTGGGGCTACTACAGTGCAAAGGAAGAGCTTGATGCGTTAATTGGCTCCCTGAATCCAAAGGGTGAGAGAGAGAGGGCTTTACAAAGGCAGTTAGAAAAGCATTACTTAAAGATTAGTACTGCAATGCAGAGGAGGTCGAAGGACATTGCACAGAAGTTTGCAATAGAAGAAGCAGCTTTACGGCGTTCCACTCGTGTTCGCTCACAACCAAAGGCAGCAGCTACAGGATTTTTGGCATATGTCAATAAACATAGAGGCTAA___TGGTCTAGCTCTTGAGGCTGCCTGAATGACATATTTTCCATATTTTGAGAATTGATGCTAGTAGCGCGTTACTGGTCAAAACTCACAGCCAGATATGAAGTGTGGAATCGGATAAGAAGTCAGAGAAGATGGCTTACCATCAAAATTTTGATAAGCTTTTCTGTAAAACACTTGAAGTTATTTTTGTAAAGTATTCTAAAACTCAAATTTATTCTGCCCAACATCATTCCTAAATTGTGGCCCATTTTGCTGTCTCTGTAAAAGCTACTGTTTAGATTCTGATGATGCAACTAAGAGATTTAGTAATCTTCTGTTGTTTGAAAAGAAATGATAAATCTCTTTAAATGGTGATTAAATCCTCCTCTGGTTAGACAGATTAGAGTTGGTGTAGTGGTTCTGGTTGCACCAACGAGTTGTCATTTCTTTGTGAACTTTTTCAATTTCATTTTA

Fln Alignment:

Contig12554___MPLFKRKPFPLAEPPEDIKPNEQVFQIRFTKEIFRDYQEYLERINLYRQRVWICKVSGKTNLTYEEALVSERRATEKVQHFPKELIGPVLRMVQFKTLRVKELVSKISNSIKDFYLVGEEVTGRKKDSVIPCKILKVIQEIDDEDGSFKYEVGWLDKNKKVTDTSIENAEALVRKKPLVTQDVLKSFIRESTSSNTPWVIHDELARKYRISTDPPEDLKDK--------IIKQEKQHNLPSDVNKSSAQNVENGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPIEDSLVQPGPDDPAFTERPCEATDFLTPMDCVGDILMVWDFCTSFGKALHLWPFSLEDFEKAIEYTEGDVTLLAETHYALLRIVAKDSSAYQDLIQ--KRKSKLSIQNWQDHLCYFLEAEEVGKLLGHLETIKGGVYSELDPRSKLDILHELVNRAITSDVIRGQLDEYIEERHALAARKREEQIEESRRKKEHLKQLNGQGKDDPDENATKEIGDNDGAMDASDTEVQKCAPGENGLVADDAVREGSNENGVKDIPEIHYENGDGNHSQTTLRXXXXXXXXXXXXXXXXXXXXXXXXXQKKMQEKRKAKAEIMKEQKLREQRALEMQKRQEQLDREIEKRFIRTNSLGRDKAYSRYWFFRREGRIFVEKQDSTWWGYYSAKEELDALIGSLNPKGERERALQRQLEKHYLKISTAMQRRSKDIAQKFAIEEAALRRSTRVRSQPK-AAATGFLAYVNK
D7SWL0_______________MPLLKRKPYVLSEPPTDLKPRQHVYQIRFTREIFRDYDEYLTKINLYRQRVWTCKVTAKTNLTYEEALVSELNATEKIQKFPYELIPSVLQTVQFSMLSLKDLVNTITVKLQYHLLVGEELYGKRDDCVSLCQIIKVLEEGDNKT---RYEVAWLDKDKKRIGTAVVNAEDLIRKKLPFTREVLKSFIRESTYRNVPWVLHDKWAQEHAISTDPPEEIRSKYFFKDGHLVINKKKRKTEDDKQNITETRNGQVG-----KSKNKLEREKSEGLVMERSAEKEDFEPKEEPINYPIDDLLVRPGPDDPVFTDRPSPSRDFTVPMDCVGDLLMVWDFVSSFGRLLHLFPFSLQDFENAICHKDSNLIIIVETHSALLRLLVKDDGQYFTAIQEKKRKPKITIITWTEYLCDFLEMVEMPELSSCIPTIKRGHYGLLETHAKLGIFRELIAQTLATDLVRKKLDEYIEERQTLAATKRGEAIEEGRKKREEKERLKA-------ESAAVQEANGHGL--------------ENNNTSDDAL---GNSDGKKSSKKQKVDVKDQPES----------------------------GKDPSKKEANKMTLQQPKADKKETTEKKSIEQRREYLQREIDKRFIRTEPLGKDKDYNRYWFFRRDGRIFVESWDSKQWGYYSTKEELDAFKGSLNRKGVRERALQSQLEKSNNKICFELQKRSKDVAQKIAMEEAVLRRSTRVRAPPRDNPAVAFLKYVNK

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
399	16	83			0.994512
400			83	16	0.994512
401	83		16		0.994512
402	83		16		0.994512
404	83		16		0.994512
990		66		33	0.997452
991		66	33		0.997452
992			33	66	0.997452
993			33	66	0.997452
1101	20		80		0.995493
1102	20			80	0.995493
1104		80	20		0.995493
1264		12		87	0.992554
1351	77			22	0.999999
1359	87		12		0.992554
1391		85	14		0.993533
1581	57	14			1.0
1613			90	10	0.90298
1614	90			10	0.90298
1678		12	87		0.992554
1680			87	12	0.992554
1681	87			12	0.992554
1738			83	16	0.994512
1739			83	16	0.994512
2395			50	50	1.0
2423		25		75	0.996473
2556	33		66		1.0
3279	16		83		0.994512
3280		83		16	0.994512
3282			16	83	0.994512
3283			16	83	0.994512
3606			12	87	0.992554
3607			85	14	0.993533
3708			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain