SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12525

Length: 2239 nt

UniGene Fasta

>sp_v3.0_unigene12525
ATGGGGCTGCCTGTTGAATGCAATTGCCGTGCGTTTCTTCATCGCATAGCCGAAAAAGAGGAAAATAGGTAGCTGGAAGTGCCCCTGGGCAGAGAATCTCTTGTCCCAGACGAGCAACCAATAAAGCAATTGCTTTGCCGGTGCTTGAATCAGTTCGGCCTTTCGAGGTATTTATTAGGCAAATTTGATCTTGAATTCAAGATTTGCAGGTGTTTTATGGCATCCAGGGTGCTTCCATTCGTGAGCCGAAGAACCTGCAGAATTTGGTCCTCAGCAAGGTCTCATGAATTCCGTTACACTAGTTCCCGTAACTTGAATTCCTCTTCGAAAACCCTGCAATATTCTTCGGTGGCTGCAGCCACGGCTCCTCAAGTTCGCGCAGATTCCGTCAATGGAGCCATTAATGCTCCTGCTGCCGTTCACGATTTCGAAGATGCAGAGGGATTGTTCTCGGGCTTAACGACGAGGGAGCTTATTACTTCGCTTTTCAATCTCCTTCTTGTTTCCTGCGAGCCTGTCGCGGATCTGGGCATGAAAGCGCTGAAATCACCTCTGATGGATTACGCGCCTTACAGAGTACCGCTTCTCAAAGCCGTGAAGCAGACCGCGTTTTCTCATTTCTGCGCTGGGGAGAGCGTCGCAGAGGCCTCGGATACTTTGAATAGAATGTGGGCGTTGGGTTTGAAGGGAATTCTTGATTACAGCTTAGAAGATGCTGTGGATAACGCTGCCTGTGATGCCAATCTCCGCCAGTTTCTCACCACCGTCCAGTCGACGCCTCTGCTTCCACCTGGATCGGTAAGTTTTGCCTGTGTGAAAATCACGGCCATCTGTCCTCTTGCTCTTTTGGAAAGAATCAGCCACTTGCTAAGATGGCAGCACCGCCATCCAACCTTCAGCCTGCCCTGGAAGGCAGAGGCTTTGCCTGTTCTTGCTCCGTCAAGCCCTACTTACCACACATGCTCTGCGCCTGAGCCATTGAGCCCCACCGAGGAAAATGATCTAATTTCAGCGGAGCAAAGGCTATTTCAGCTCTGCCGAGCCTGCGAGGCCATTTCGCTTCCTTTGCTGGTAGATGCAGAATACACAGCCGTTCAGCCTGCCATTGATTACTTTATTTACAGAGCATTTTCCGAATACAACAAAGGCCGCGAGCCTCTGGTGTATGGGACTATACAAGCTTACTTGAAAGACGCTTTGCCTCGTCTAATTGAGGCATCCGAAGCAGCTAAAAAGCAGGGCATTTCAATGGCTCTGAAACTTGTGCGGGGTGCCTACATCACAAGAGAAAGTGCCGAGGCAAAATCATTTGGCGCCCCTTCCCCTGTACATTCTCTGATTACGGACACACACAGCTGTTACAACGCCTGCACTTCGTTGATGCTAGAGAAGGTTTCTGAGGGCGAAGCATCACTGCTACTAGCTACACACAATTTCGAGTCTGCAAAATTGGCCGCTGGTAAGGCTGAAGAATTGGGAATTATGAAAAGAGGGCAGAGTGGGTTACAGTTCGCTCAATTGAAGGGCATGTCGGACAGTCTATCTCTGGGTTTGGTCAAAGCGGGATTCGAGGTGAGCAAATATCTTCCATTTGGACCAGTGGAGAGTGTGATGCCGTATCTCATCAGGAGAGCCGAAGAAAACCGCGGGATGCTTGCTGCAACCTTTCTGGATATTGAGCGTCTCCGGTCGGAGTTGAAACGGAGGATTTTACCATTTTGACAGCCAGATAAACAACCAAATTGCAGCAGCAGCGGCAGCTTTATCCATGGCGTTATGGGGAAATGTTTTCTTGTACATTGTGTATTCAATACGAATGCCAATGACAGTACATACTGTGGTGCCATCTTTTTTCTCGCCAACCGATGGATGCTCAATTGTAGTGACAATGATGAAACCTGTAATTCTCTGCTGGAGCGATTTGGTGTTCAATCTGTAATGCTTTTCTGGTAATCCGAAAGTGAAAGGAGAAGATGAAACTTGTAATGCTCTGCTGGGGGGATTTGGTGTTCAATCTGTAATGCTTTTCTGGTAATCTGAAAGTGAAAGAAGAAGATGAAACCTGTAATGTAATGCTCTGCTGGGGGGGGGATTTGGTGTTCAATCTGTAATGCTTTTCTGGTAATCTGAAAGTGAAAGAAGAATTTGATGTCCAATCTGTAATGCATTATCATGTGCAAGTGGAGAAGAATTTGATGTTGCATCTCTAATGCTCATTTCCTAATGTCAAACAAAGAAT

Ace file of the UniGene sp_v3.0_unigene12525

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	proline dehydrogenase [Glycine max]	-	-	0.0	49%
FL-Next	sp=Proline dehydrogenase 1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	47%
Sma3	Proline dehydrogenase	-	-	3.042e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Proline dehydrogenase.	EC:1.5.99.8	-	5.987e-17	-

Source	KEGGs	Term	e value	Identity
Sma3	Arginine and proline metabolism	00330	5.987e-17	%
Sma3	Metabolic pathways	01100	5.987e-17	%
Sma3	Biosynthesis of secondary metabolites	01110	5.987e-17	%

Source	Gene names
Sma3	At3g30775; At5g38710; ERD5; GSVIVT00038134001; LOC_Os10g40360; MIF6.19; OSJNBa0015J15.31; Os10g0550900; OsI_34579; OsJ_32385; PDH; PHYPADRAFT_118856; PHYPADRAFT_146384; PHYPADRAFT_210667; POPTRDRAFT_266077; POPTRDRAFT_859200; POX; PRO1; PROX1; PROX2; ProD

Source	GOs	Term	Type	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	proline dehydrogenase activity	GO:0004657	Molecular Function	-
Sma3	glutamate biosynthetic process	GO:0006537	Biological Process	-
Sma3	proline catabolic process	GO:0006562	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proline dehydrogenase	IPR002872	-	0.0	-
Sma3	Proline oxidase	IPR015659	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G30775.1	ERD5, PRODH, AT-POX, ATPOX, ATPDH, PRO1 Methylenetetrahydrofolate reductase family protein chr3:12448880-12451126 REVERSE LENGTH=499	47%
RefSeq	Arabidopsis thaliana	NP_189701.3	proline dehydrogenase 1 [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002305291.1	predicted protein, partial [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P92983

Fln msg:

Fln protein: MASRVLPFVSRRTCRIWSSARSHEFRYTSSRNLNSSSKTLQYSSVAAATAPQVRADSVNGAINAPAAVHDFEDAEGLFSGLTTRELITSLFNLLLVSCEPVADLGMKALKSPLMDYAPYRVPLLKAVKQTAFSHFCAGESVAEASDTLNRMWALGLKGILDYSLEDAVDNAACDANLRQFLTTVQSTPLLPPGSVSFACVKITAICPLALLERISHLLRWQHRHPTFSLPWKAEALPVLAPSSPTYHTCSAPEPLSPTEENDLISAEQRLFQLCRACEAISLPLLVDAEYTAVQPAIDYFIYRAFSEYNKGREPLVYGTIQAYLKDALPRLIEASEAAKKQGISMALKLVRGAYITRESAEAKSFGAPSPVHSLITDTHSCYNACTSLMLEKVSEGEASLLLATHNFESAKLAAGKAEELGIMKRGQSGLQFAQLKGMSDSLSLGLVKAGFEVSKYLPFGPVESVMPYLIRRAEENRGMLAATFLDIERLRSELKRRILPF*

Protein Length: 503

Fln nts: ATGGGGCTGCCTGTTGAATGCAATTGCCGTGCGTTTCTTCATCGCATAGCCGAAAAAGAGGAAAATAGGTAGCTGGAAGTGCCCCTGGGCAGAGAATCTCTTGTCCCAGACGAGCAACCAATAAAGCAATTGCTTTGCCGGTGCTTGAATCAGTTCGGCCTTTCGAGGTATTTATTAGGCAAATTTGATCTTGAATTCAAGATTTGCAGGTGTTTT_-_ATGGCATCCAGGGTGCTTCCATTCGTGAGCCGAAGAACCTGCAGAATTTGGTCCTCAGCAAGGTCTCATGAATTCCGTTACACTAGTTCCCGTAACTTGAATTCCTCTTCGAAAACCCTGCAATATTCTTCGGTGGCTGCAGCCACGGCTCCTCAAGTTCGCGCAGATTCCGTCAATGGAGCCATTAATGCTCCTGCTGCCGTTCACGATTTCGAAGATGCAGAGGGATTGTTCTCGGGCTTAACGACGAGGGAGCTTATTACTTCGCTTTTCAATCTCCTTCTTGTTTCCTGCGAGCCTGTCGCGGATCTGGGCATGAAAGCGCTGAAATCACCTCTGATGGATTACGCGCCTTACAGAGTACCGCTTCTCAAAGCCGTGAAGCAGACCGCGTTTTCTCATTTCTGCGCTGGGGAGAGCGTCGCAGAGGCCTCGGATACTTTGAATAGAATGTGGGCGTTGGGTTTGAAGGGAATTCTTGATTACAGCTTAGAAGATGCTGTGGATAACGCTGCCTGTGATGCCAATCTCCGCCAGTTTCTCACCACCGTCCAGTCGACGCCTCTGCTTCCACCTGGATCGGTAAGTTTTGCCTGTGTGAAAATCACGGCCATCTGTCCTCTTGCTCTTTTGGAAAGAATCAGCCACTTGCTAAGATGGCAGCACCGCCATCCAACCTTCAGCCTGCCCTGGAAGGCAGAGGCTTTGCCTGTTCTTGCTCCGTCAAGCCCTACTTACCACACATGCTCTGCGCCTGAGCCATTGAGCCCCACCGAGGAAAATGATCTAATTTCAGCGGAGCAAAGGCTATTTCAGCTCTGCCGAGCCTGCGAGGCCATTTCGCTTCCTTTGCTGGTAGATGCAGAATACACAGCCGTTCAGCCTGCCATTGATTACTTTATTTACAGAGCATTTTCCGAATACAACAAAGGCCGCGAGCCTCTGGTGTATGGGACTATACAAGCTTACTTGAAAGACGCTTTGCCTCGTCTAATTGAGGCATCCGAAGCAGCTAAAAAGCAGGGCATTTCAATGGCTCTGAAACTTGTGCGGGGTGCCTACATCACAAGAGAAAGTGCCGAGGCAAAATCATTTGGCGCCCCTTCCCCTGTACATTCTCTGATTACGGACACACACAGCTGTTACAACGCCTGCACTTCGTTGATGCTAGAGAAGGTTTCTGAGGGCGAAGCATCACTGCTACTAGCTACACACAATTTCGAGTCTGCAAAATTGGCCGCTGGTAAGGCTGAAGAATTGGGAATTATGAAAAGAGGGCAGAGTGGGTTACAGTTCGCTCAATTGAAGGGCATGTCGGACAGTCTATCTCTGGGTTTGGTCAAAGCGGGATTCGAGGTGAGCAAATATCTTCCATTTGGACCAGTGGAGAGTGTGATGCCGTATCTCATCAGGAGAGCCGAAGAAAACCGCGGGATGCTTGCTGCAACCTTTCTGGATATTGAGCGTCTCCGGTCGGAGTTGAAACGGAGGATTTTACCATTTTGA___CAGCCAGATAAACAACCAAATTGCAGCAGCAGCGGCAGCTTTATCCATGGCGTTATGGGGAAATGTTTTCTTGTACATTGTGTATTCAATACGAATGCCAATGACAGTACATACTGTGGTGCCATCTTTTTTCTCGCCAACCGATGGATGCTCAATTGTAGTGACAATGATGAAACCTGTAATTCTCTGCTGGAGCGATTTGGTGTTCAATCTGTAATGCTTTTCTGGTAATCCGAAAGTGAAAGGAGAAGATGAAACTTGTAATGCTCTGCTGGGGGGATTTGGTGTTCAATCTGTAATGCTTTTCTGGTAATCTGAAAGTGAAAGAAGAAGATGAAACCTGTAATGTAATGCTCTGCTGGGGGGGGGATTTGGTGTTCAATCTGTAATGCTTTTCTGGTAATCTGAAAGTGAAAGAAGAATTTGATGTCCAATCTGTAATGCATTATCATGTGCAAGTGGAGAAGAATTTGATGTTGCATCTCTAATGCTCATTTCCTAATGTCAAACAAAGAAT

Fln Alignment:

Contig12525___DFEDAEGLFSGLTTRELITSLFNLLLVSCEPVADLGMKALKSPLMDYAPYRVPLLKAVKQTAFSHFCAGESVAEASDTLNRMW-ALGLKGILDYSLEDAVDNAACDANLRQFLTTVQSTPLLPPGSVSFACVKITAICPLALLERISHLLRWQHRHPTFSLPWKAEALPVLAPSSPTYHTCSAPEPLSPTEENDLISAEQRLFQLCRACEAISLPLLVDAEYTAVQPAIDYFIYRAFSEYNKGRE-PLVYGTIQAYLKDALPRLIEASEAAKKQGISMALKLVRGAYITRESAEAKSFGAPSPVHSLITDTHSCYNACTSLMLEKVSEGEA-SLLLATHNFESAKLAAGKAEELGIMKRGQSGLQFAQLKGMSDSLSLGLVKAGFEVSKYLPFGPVESVMPYLIRRAEENRGMLAATFLDIERLRSELKRRIL
P92983_______________DLSDQARLFSSIPTSDLLRSTAVLHAAAIGPMVDLGTWVMSSKLMDASVTRGMVLGLVKSTFYDHFCAGEDADAAAERVRSVYEATGLKGMLVYGVEHADDAVSCDDNMQQFIRTIEAAKSLPTSHFSSVVVKITAICPISLLKRVSDLLRWEYKSPNFKLSWKLKSFPVFSESSPLYHTNSEPEPLTAEEERELEAAHGRIQEICRKCQESNVPLLIDAEDTILQPAIDYMAYSSAIMFNADKDRPIVYNTIQAYLRDAGERLHLAVQNAEKENVPMGFKLVRGAYMSSEASLADSLGCKSPVHDTIQDTHSCYNDCMTFLMEKASNGSGFGVVLATHNADSGRLASRKASDLGIDKQ-NGKIEFAQLYGMSDALSFGLKRAGFNVSKYMPFGPVATAIPYLLRRAYENRGMMATGAHDRQLMRMELKRRLI

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
116	80		20		0.995493
134	16			83	0.994512
136		14		85	0.993533
138		85		14	0.993533
142	14			85	0.993533
143		14	85		0.993533
148	85			14	0.993533
149	85		14		0.993533
153		14	85		0.993533
155		14		85	0.993533
156	14	85			0.993533
433	11		88		0.923564
437		88		11	0.923564
474		11		88	0.923564
475	88		11		0.923564
477			11	88	0.923564
482		88	11		0.923564
487		11		88	0.923564
621		80		20	0.995493
630		20	80		0.995493
718	20		80		0.995493
719		20		80	0.995493
723		20		80	0.995493
724	80		20		0.995493
786	11			88	0.923564
787	11	88			0.923564
788		88		11	0.923564
789	88		11		0.923564
790		88		11	0.923564
1879	7			92	0.999664

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain