SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12517

Length: 1180 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12517

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-galactosidase n=1 Tax=Picea sitchensis RepID=A9NUR2_PICSI	-	-	73%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Sma3	Beta-galactosidase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-galactosidase.	EC:3.2.1.23	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Galactose metabolism	00052	%
Sma3	Other glycan degradation	00511	%
Sma3	Glycosaminoglycan degradation	00531	%
Sma3	Sphingolipid metabolism	00600	%
Sma3	Glycosphingolipid biosynthesis - ganglio series	00604	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	AT3G13750; AT4G35010; AT5G56870; At1g31740; At1g45130; At1g77410; At2g04060; At2g16730; At2g28470; At2g32810; At3g13750; At3g52840; At4g26140; At4g35010; At4g36360; At4g38590; At5g20710; At5g56870; At5g63800; At5g63810; BG1; BGAL1; BGAL10; BGAL11; BGAL12;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	beta-galactosidase complex	GO:0009341	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	beta-galactosidase activity	GO:0004565	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	plant-type cell wall modification	GO:0009827	Biological Process	-
Sma3	coenzyme A metabolic process	GO:0015936	Biological Process	-
Sma3	mucilage biosynthetic process involved in seed coat development	GO:0048354	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycoside hydrolase, family 35	IPR001944	-	-
Sma3	Glycoside hydrolase, family 2, N-terminal	IPR006104	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G13750.1	BGAL1 beta galactosidase 1 chr3:4511192-4515756 FORWARD LENGTH=847	66%
RefSeq	Arabidopsis thaliana	NP_187988.1	beta galactosidase 1 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002314274.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUR2

Fln msg: Overlapping hits, possible frame ERROR between 228 and 227, and possible frame ERROR between 562 and 570, Distance to subject end: 450 aas, your sequence is shorter than subject: 394 - 861

Fln protein: TFHCKVDAITTVSYDGRALLINGQRRVLISGSIHYPRSTPEMWPDLIAKSKDGEIDVIETYVFWNGHEPEKRQYKxxEGRFDLVRFLKTVQQAGLYAHLRIGPYACAEWNYGGFPLWLHAIPGIELRTDNEPFKYEMETFTTKIVKMMKQDKLFAWQGGPIILTQIENEYQQVEQYYGEKGKSYVNWxxxKMALSLNTSIPWVMCKQTDAPDPIINTCNDFYCDYFQPNSPKKPKMWTENWAGWFQTFGGRTPHRPTEDIAFAVARFFQRGGTFQNYYMYHGGTNFGRTSGGPYITTSYDYDAPIDEYGNIRQPKWGHLKELHKAIKQCEPALVYGDMSTISVGKNLEATVYAINSSGVCAAFLSNVDSKQDASVQFNGASHNLPAWSISVLPD

Protein Length: 395

Fln nts: ACATTTCACTGTAAAGTGGATGCCATTACCACGGTTAGCTATGATGGTAGAGCTTTGCTGATCAATGGACAGCGCCGGGTTTTAATCTCTGGATCCATACATTACCCACGAAGCACGCCAGAGATGTGGCCAGATCTTATTGCCAAGTCTAAGGATGGGGAAATCGATGTCATTGAGACTTATGTCTTTTGGAATGGGCATGAGCCTGAGAAACGCCAGTATAAAxxxxxxGAGGGAAGATTCGACTTGGTTAGATTTTTGAAGACAGTACAACAAGCCGGCCTTTATGCTCACCTCAGAATAGGACCTTATGCTTGTGCAGAGTGGAATTATGGAGGTTTCCCTCTTTGGTTGCATGCCATACCAGGAATCGAGCTGAGAACAGACAATGAACCATTTAAGTATGAGATGGAAACTTTTACAACAAAGATAGTGAAGATGATGAAACAGGATAAGCTATTTGCATGGCAAGGTGGACCTATTATCTTGACACAGATAGAAAATGAATACCAACAAGTAGAACAATATTATGGAGAGAAGGGTAAGTCATATGTGAACTGGxxxxxxxxxAAAATGGCCTTATCATTAAATACAAGTATTCCATGGGTGATGTGCAAACAAACTGATGCTCCAGACCCAATTATCAATACCTGCAACGATTTCTACTGTGACTATTTCCAACCTAATTCTCCAAAAAAGCCAAAGATGTGGACTGAGAACTGGGCTGGATGGTTTCAGACATTCGGAGGGAGGACCCCTCATAGGCCTACTGAGGATATTGCGTTCGCAGTAGCGCGATTTTTCCAGAGAGGAGGAACATTTCAGAACTATTACATGTACCATGGAGGCACAAATTTTGGCCGGACAAGCGGAGGTCCATACATTACCACCAGTTACGACTATGATGCGCCCATTGACGAATATGGGAATATAAGACAGCCAAAGTGGGGGCATCTGAAAGAGTTGCACAAAGCTATAAAACAATGTGAACCTGCTCTAGTCTATGGAGACATGAGTACCATTTCAGTGGGGAAAAACCTTGAGGCAACAGTATATGCTATAAATAGTTCTGGCGTCTGTGCCGCCTTTCTTAGCAACGTAGACAGTAAACAGGATGCATCCGTGCAATTCAATGGGGCATCTCACAATCTACCTGCTTGGTCTATCAGTGTCTTGCCCGACTG

Fln Alignment:

Contig12517___FHCKVDAITTVSYDGRALLINGQRRVLISGSIHYPRSTPEMWPDLIAKSKDGEIDVIETYVFWNGHEPEKRQYKxEGRFDLVRFLKTVQQAGLYAHLRIGPYACAEWNYGGFPLWLHAIPGIELRTDNEPFKYEMETFTTKIVKMMKQDKLFAWQGGPIILTQIENEYQQVEQYYGEKGKSYVNWAxxxMALSLNTSIPWVMCKQTDAPDPIINTCNDFYCDYFQPNSPKKPKMWTENWAGWFQTFGGRTPHRPTEDIAFAVARFFQRGGTFQNYYMYHGGTNFGRTSGGPYITTSYDYDAPIDEYGNIRQPKWGHLKELHKAIKQCEPALVYGDMSTISVGKNLEATVYAINSSGVCAAFLSNVDSKQDASVQFNGASHNLPAWSISVLPD
A9NUR2_______________YYWKHVSAANVTYDHRSLLIDGQRRVLISGSIHYPRSTPEMWPDIIQKAKDGGLDVIESYVFWNMHEPKQNEYYxEDRFDLVKFVKIVQQAGLLVHLRIGPYACAEWNYGGFPVWLHLIPGIHFRTDNEPFKNEMQRFTAKIVDMMKQEKLFASQGGPIILAQIENEYGNIDGPYGAAGKSYVKWAxxxMAVGLNTGVPWVMCQQADAPDPIINTCNGFYCDAFTPNSPNKPKMWTENWSGWFLSFGGRLPFRPTEDLAFSVARFFQRGGTFQNYYMYHGGTNFGRTTGGPFIATSYDYDAPIDEYGIVRQPKWGHLKELHKAIKLCEAALVNAESNYTSLGSGLEAHVYS-PGSGTCAAFLANSNTQSDATVKFNGNSYHLPAWSVSILPD

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
419		33		66	0.997452
553	80			20	0.995493
579		66		33	0.997452
702		75		25	0.996473
941	12		87		0.992554
944	87		12		0.992554
1059	33		66		0.997452
1061	33			66	0.997452
1062	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain