SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12514

Length: 1762 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12514

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] sp\|C0LGJ1.1\|Y1743_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At1g74360; Flags: Precursor gb\|ACN59276.1\| leucine-rich repeat receptor-like	-	-	0.0	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Sma3	Putative leucine-rich repeat receptor-like kinase	-	-	1.329e-07	-

Source	Gene names
Sma3	AT1G74360; AT3G13380; AT4G39400; AT5G07280; At1g56720; At2g35620; At2g42960; At3g13380; At3g17420; At3g59110; At4g39400; At5g07280; BRI1; BRL3; CLL4A; CLL4B; CURL3; EMS1; ESP; EXS; F14J9.10; F17J16_160; F1M20.4; F23K16.30; F25P12.84; GSVIVT00000078001; GS

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	endosome membrane	GO:0010008	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	steroid binding	GO:0005496	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	microtubule bundle formation	GO:0001578	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	meiosis	GO:0007126	Biological Process	-
Sma3	megasporogenesis	GO:0009554	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	skotomorphogenesis	GO:0009647	Biological Process	-
Sma3	detection of brassinosteroid stimulus	GO:0009729	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3	tapetal cell fate specification	GO:0010234	Biological Process	-
Sma3	brassinosteroid homeostasis	GO:0010268	Biological Process	-
Sma3	tapetal layer development	GO:0048658	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM41

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon is far from subject stop. Distance to subject end: 30 aas, your sequence is shorter than subject: 477 - 613

Fln protein: YRANTKLIYQSE*AHKIQHFVQSIIDRNCSM*GQFSTFEEDSYIGDDQLCFQHLPNMRNGLNNSRSCGSLKGPAPGTTKQSVHVNSRRPRTILLVVSIMASVAILFCGLLTLYMRKKVSRSNPMEVEFIILKENNSGGFSPGIKTMHFFRGEQFTFTDILLATSNFSESHVIGNGGFGTVYKGKLRNGSTVAVKKLQQKGPEGEKEFLAEMQTLGNHEFHENLVPLLGCCLFGTEKILVYDFMSNGSLEDWLHEKHDGPRRLDWPTRYKIAVGTAKGLKFLHHDCSPVVIHRDMKASNILLDDSFNPRVTDFGLARCLDVEGSHVSTVVAGTVGYVPPEYSQSWRATTKGDVYSYGVVLLELITGKRPLSVSENSDGNLVEWVNMLISDGRAAEAIDPLLLLEQGEGSSQSSTLTYPSPCSSISSSPPSGPVSARYLQQNQLIHFLHLGHICTAESPNRRPNIKHVLTILQSMGDA*

Protein Length: 478

Fln nts: TTACAGGGCAAATACCAAGCTCATTTACCAATCTGAGTGAGCTCACAAAATTCAACATTTCGTTCAATCCATTATTGACAGGAATTGCTCCATGTGAGGGCAATTTAGCACGTTTGAAGAAGATTCTTACATTGGAGACGATCAACTCTGTTTTCAGCACCTTCCAAACATGAGAAATGGCTTAAACAATTCACGGTCATGTGGATCATTAAAGGGTCCAGCTCCTGGAACTACCAAGCAATCAGTCCATGTTAATTCGCGGAGGCCGAGGACCATTTTGTTGGTTGTATCCATTATGGCCAGTGTCGCTATTCTGTTTTGTGGACTTCTCACCTTGTATATGAGGAAGAAGGTCTCCAGAAGTAACCCAATGGAAGTGGAATTTATTATCCTGAAAGAAAATAACAGTGGCGGGTTCTCTCCAGGCATCAAAACAATGCATTTCTTCAGAGGCGAGCAGTTTACCTTCACAGACATTCTCTTAGCAACATCAAATTTCTCTGAATCTCATGTTATCGGTAATGGAGGTTTTGGAACGGTTTACAAAGGTAAACTAAGAAATGGATCAACAGTGGCCGTCAAAAAGTTGCAGCAAAAGGGACCCGAAGGCGAGAAAGAGTTTTTAGCAGAAATGCAGACTTTAGGAAATCATGAATTTCACGAGAACCTGGTTCCTCTGCTCGGTTGCTGTTTATTTGGGACAGAGAAAATTCTTGTATATGATTTCATGTCCAACGGTAGCTTGGAGGATTGGCTCCATGAAAAACATGATGGACCCAGACGATTAGACTGGCCTACAAGGTATAAAATTGCTGTGGGAACTGCAAAGGGGCTCAAGTTTCTGCATCACGATTGTTCTCCTGTAGTCATACATAGAGATATGAAGGCAAGCAATATCCTTTTGGACGACAGCTTTAATCCCCGTGTCACGGATTTTGGCCTTGCCCGATGTTTGGATGTTGAGGGAAGCCATGTCAGCACAGTGGTTGCAGGGACTGTTGGATATGTTCCACCGGAGTATTCACAGTCTTGGAGAGCCACCACCAAGGGGGATGTTTACAGTTATGGGGTGGTTTTGCTTGAGCTGATCACTGGGAAAAGGCCACTCTCTGTGAGTGAGAACAGTGATGGTAATCTGGTTGAATGGGTAAATATGCTGATTTCAGATGGCCGGGCAGCCGAGGCTATCGATCCACTTTTGCTTCTCGAGCAAGGTGAAGGGAGCAGTCAATCATCAACATTAACGTATCCATCTCCATGTTCATCTATAAGTTCGTCCCCTCCTTCTGGGCCCGTTTCTGCCAGGTATCTCCAGCAAAATCAGCTCATACACTTTCTTCATTTGGGCCACATATGTACAGCTGAATCACCAAACCGGAGACCCAACATAAAACATGTTCTAACCATACTTCAGTCCATGGGGGATGCATAG___TTTTTTTTCCGTACAAATTTGTTTCGCCATTTCATCACCAATCCCCAATTTTATAGTGTACATGGCAGTTGTTCTCTCCCTCTTTACTTTGGCTTGGCATTAGCTTCTTGAGCTGAATATTAAAAGAGGTTTAATTTGGCATTCCAATATAGCTGGTCCAAATAATGAATGGCGGATATCACACATCATCTATTCATATCCTGGGTCAAAAAAAGTGGTTCTAACAAATTCGTTTACAGGCTTTCATAAGCGAACAGAGAGAATATTTTTATTTTAATCTTGGGTTGCCTGAAAACACTGAAACGCGTCAATCAAGATTTTAAGCAACCT

Fln Alignment:

Contig12514___TDILLATSNFSESHVIGNGGFGTVYKGKLRNGSTVAVKKLQQKGPEGEKEFLAEMQTLGNHEFHENLVPLLGCCLFGTEKILVYDFMSNGSLEDWLHEKHDGPRRLDWPTRYKIAVGTAKGLKFLHHDCSPVVIHRDMKASNILLDDSFNPRVTDFGLARCLDVEGSHVSTVV---AGTVGYVPPEYSQSWRATTKGDVYSYGVVLLELITGKRPLSVSENSD---GNLVEWVNMLISDGRAAEAIDPLLLLEQGEGSSQSSTLTYXXXXXXXXXXXXXXXXXARYLQQNQLIHFLHLGHICTAESPNRRPNIKHVLTILQSMGD
B8LM41_______________SDLMAATNDFSPENIIGSGRTGTVYRATLTDGSVMAIKRLRDSA-QSEKQFKAEMNTLARLR-HRNLVPLLGYCIAGQEKLLVYKHMANGSLWDCLQSKENPANNLDWTARLKIGIGGARGMAWLHHSCNPRVIHRNISSNSILLDDEYEPRITDFGLARLMNPVDTHLSTFINGDFGDLGYVAPEYMRTLVATLKGDVYSFGVVLLELVTGQKPINVENGEDGFKGNLVDWITKLSNDGRISEAIDKSLI---GRG------------------------------QEDELLQFMRVACACVLSGAKERPSMYEVYHLLRAIGE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1422	85			14	0.993533
1512	25			75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain