SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12505

Length: 572 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene12505
AGGCTGCCAAGTGGGTTGCTAGAGTGCGTGGGTACATACCTGTAAATTGCTGTCAGCCTATTCTTCTGAAGACAAACATGCACTCGGGACATTTTTGAGAAGGTGGTCGGTATGAACATTGTAAAGATACTTCCTTCGAGTATGCATTTTTTATCAAAATGATGGGAACATAGATTTTTCCTGGTCAGTTTAGCGTACCTTTCATGTATTTGAGACATCAAGCCTCATGCTCTATTAATACTTCCAACTTTTTGTTGGTTGCGAAAAATAATATTTTAGGTACATAGAGGCTGATCCACTTTTCTACGAATGGGGATCTAACTGTGTCATAAGTCGTAGGTTGCAGGACTCCCTGAATGAGATACTTTGGCGTTTCAACAACTGACAGTTCCTTTAGAATCTTTTTGTGGGTTGTTGAATACTGAACTTAAAGGCCCAGTTTTAGAGCTATATAGAAATTTTCATTAGAAAAGATGCCAAGGACTGTGATCCTTTTGAGCAATGTATTTGGAGACATTTTGTCTTTAGAAAAGATGCCCAGGATTGTGATCCTTGTGATCGATGTATTTGAA

Ace file of the UniGene sp_v3.0_unigene12505 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protease 2 n=2 Tax=Andropogoneae RepID=B6U2A2_MAIZE	-	-	1.0e-12	60%
FL-Next	tr=Protease 2; Zea mays (Maize).	-	-	0.0	60%
Sma3	Protease 2	-	-	7.797e-06	-

Source	GOs	Term	Type	e value	Identity
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	-
Sma3	Peptidase S9A, prolyl oligopeptidase	IPR002470	-	-
Sma3	Peptidase S9A/B/C, oligopeptidase, N-terminal beta-propeller	IPR004106	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69020.1	Prolyl oligopeptidase family protein chr1:25943949-25947197 REVERSE LENGTH=757	2.0e-14	53%
RefSeq	Arabidopsis thaliana	NP_177065.2	prolyl oligopeptidase-like protein [Arabidopsis thaliana]	3.0e-14	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B6U2A2

Fln msg: your sequence is shorter than subject: 57 - 784

Fln protein: AAKWVARVRGYIPVNCCQPILLKTNMHSGHF*EGGRYEHCKDTSFEYAFFIKMMGT*

Protein Length: 58

Fln nts: AGGCTGCCAAGTGGGTTGCTAGAGTGCGTGGGTACATACCTGTAAATTGCTGTCAGCCTATTCTTCTGAAGACAAACATGCACTCGGGACATTTTTGAGAAGGTGGTCGGTATGAACATTGTAAAGATACTTCCTTCGAGTATGCATTTTTTATCAAAATGATGGGAACATAG___ATTTTTCCTGGTCAGTTTAGCGTACCTTTCATGTATTTGAGACATCAAGCCTCATGCTCTATTAATACTTCCAACTTTTTGTTGGTTGCGAAAAATAATATTTTAGGTACATAGAGGCTGATCCACTTTTCTACGAATGGGGATCTAACTGTGTCATAAGTCGTAGGTTGCAGGACTCCCTGAATGAGATACTTTGGCGTTTCAACAACTGACAGTTCCTTTAGAATCTTTTTGTGGGTTGTTGAATACTGAACTTAAAGGCCCAGTTTTAGAGCTATATAGAAATTTTCATTAGAAAAGATGCCAAGGACTGTGATCCTTTTGAGCAATGTATTTGGAGACATTTTGTCTTTAGAAAAGATGCCCAGGATTGTGATCCTTGTGATCGATGTATTTGAA

Fln Alignment:

Contig12505___AAKWVARVRGYIPVNCCQPILLKTNMHSGHF*EGGRYEHCKDTSFEYAFFIKMMG
B6U2A2_______________AAKWVAKVRDVACPSCSQSVILKTNMQSGHFGEGGRFTHCDETAFEYAFLMKALG

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
287		66		33	1.0
357			20	80	0.999996
368		90		10	0.90298
374	90			10	0.90298
377		20		80	0.999996
381		87	12		0.992554
382		12		87	0.992554
383	87	12			0.992554
385	75		12		0.975346
386		87	12		0.992554
388		12	87		0.992554
391		75	25		1.0
393		14	85		0.993533
399	50		50		1.0
422			25	75	0.996473
423	25	50		25	0.995533
424	75		25		0.996473
426	75	25			0.996473
428	75		25		0.996473
429		25		75	0.996473
430		25	75		0.996473
431	25	75			0.996473
433			25	75	0.996473
434	75		25		0.996473
437	25			75	0.996473
441	75	25			0.996473
481	66	33			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain