SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12477

Length: 3611 nt

UniGene Fasta

>sp_v3.0_unigene12477
CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGATGTTGGAGTGTGTTGAGTTTGTTTCATAAGTACTGATTATCACTCTGTATAATTTTATCGGTATTAACGTGACCTCGGAGAATTTTTCTGATGGAGGAATGGGAAAACCGCTCTGATCGAAGAATGGTAACGTATTCATAGAAATCATTGGAAAAATTCATTTGGGTTTGAGGATTTTCAGGATTTCAATGGAAATCTGGATGTGGGCTGCGATGTTACGATGTGGGTCGAAGAGATTGAGCTCTTTCTTTTGCTGGATTGTGGGATTTGAATGCAGGAGCTGTTTCTGCGGATGATAAAATTATGAGTTTGAGCTCTTGCTTTTGCTGGACTGTGGTCTTTGAATGCAGAAATTGCTTCTCTGGATGATAAACTTGTGCTTTTGCTAAAACAGTTGTGGGGATTCTCCAAAGTTTCTATTGATTGCTCTTGTGCATACCGTTCTTGTCATTGTCAACCCCATTATCATATCAATGTCTGGGATGGATGAGCAAGACAGGGATGGGATCAGTGAGGGCTCAATATCTCTGCTGTCATCAGAGTCCAGGTGGGTTGATGGCAGTGAAATGGAAGGGGACTCCCCAAGGTGGTTTGTTGACGATGATCAGAGTGGACACAAAATCAGGCGCAGGCTTGTTCGGAAGACCAAGAGAGTGGATTCCTTTGATGTGGAGGCCATGGAGGTGCCTGGTGCGCGCAAGGGCCATGATAAGGACCTTTCATTAGGACAGACGCTCGGCCTGGCATTCCAAACACTTGGAGTGGTCTATGGTGATTTGGGTACCAGCCCCTTGTATGTCTTCACCAGTGTATTCAGCCAGGCTCGTATCAAAGGAGATGAAGATGTTTTGGGTGCATTATCTTTAGTGATGTACACAATAGCTCTCATCCCTTTGGCTAAATATGTGTTCATTGTGCTCAAAGCCAATGACAATGGTGAAGGGGGGACATTTTCCTTGTACTCTTTGATTTGCAGATATGCAAAGGTCAATCTGCTCCCCAACCAGCAACCATCGGATGAAAAAATTTCCAGTTTCAAGCTCAAGTTGCCCACCCCAGAGCTGGAAAGATCATTAAGAATCAAAGAAAGCCTTGAGAGAAGTACAAAATTGAAGACCCTACTGCTACTCTTGGTTCTCATGGGTACTTCCATGGTAATTGGGGATGGCATACTTACACCTGCAATATCAGTCATGTCTGCAGTGAGTGGCCTGCAAGATGAAATATCTAGCTTTACGGAAGACACAGTGGTCATTGTCTCAATCGTATTCCTGGTGATCTTGTTCAGCATACAACAGTTTGGTACAAGCAAAGTAGGCATGACATTTGCTCCAGCACTCCTGATATGGTTTTTCTCTCTTGGTTCTATTGGACTTTACAATATTATTTCACATGACGTGACAGTTTTAAGGGCATTCAATCCAGTTTATATCTATTACTTTTTCAAGAGGAACACTATCAAAGCATGGATGTCCCTAGGAGGATGCGTGCTGTGCATAACAGGAGCTGAAGCTATGTTTGCTGATTTGGGTCATTTCTCAGTAAGATCCATCCAGATAGCCTTCACATTTGTAGTATTCCCATGCCTGCTATTGGCTTACATGGGTCAAGCTGCATATCTTATGAAGCATCCAGCTGTGGTGGAGAAGGTATTCTATGCTTCAATTCCAGATGGTCTTTTCTGGCCAGTCTTCGTGATAGCCACCGTTGCTGCCATGATTGCAAGCCAGGCAATGATCTCGGCAACATTTTCATGTATTAAAATGTCCATGGCCCTAGGATGCTTTCCCAGATTGAAAATAATTCACACATCCCGGCGGTTCATGGGTCAGATCTACATTCCTGTCATGAACTGGTTCCTAATGATAATGTGTGTCTTGGTATGTGCCTGTTTTAGGAGCACCACCGAGATATCAAATGCATATGGCATTGCAGAGGTAGGGGTGATGATGGTGACTACAAGCCTAGTGACTCTTGTCATGGTTCTTATATGGCAAAAGAATATATTCCTTGCGATTGGCTTTCCTCTTCTATTTGGATCAATTGAACTGACTTATTTTTCTGCAGTTTTGATGAAAGTGGGGGAAGGTGGTTGGCTTCCACTGGTTTTTGCCACCTGCTTCCTTCTTGTGATGTACATTTGGAACTATGGAAGTGTTCTGAAGTATCAAAGTGAAGTGAGGAAAAAGGTGTCAATGGATTTGATGTTAGAATTAGGATCCAACCTTGGGACAATCCGAGTCCCAGGAATTGGGTTAGTTTATAGTGAACTTGTTCGTGGAGTACCTGCAGTTTTTGGGCAGTTTTTAACAAGCCTTCCAGCAATACATTCGATCATCGTATTTGTTTGTATAAAGTATGTACCAGTTCCTGTTGTGCCACAAGATGAGCGTTTTCTCTTTAGGAGAATTTGTCCAAGGGACTATAACATGTTTCGATGTGTGGCTAGATATGGGTACAAAGACGTTCGCAAGGAACATTATGAGGCCTTTGAACAATTACTTATTGAAAGCCTTGAGAAGTTTCTTCGAAAGGAGGCTTTAGAACTTGCCCTTGAGAATGAGAGCTTGATTGTAGACTCGGACGATGAATCAGTTGATTCTAAAGGAGCAGGACCTTCAAATGGTTTCACTGACTCTCTTAGGACACCTCTGATGGAAGACCAGAGACACGCACAATATGGTGCCCCATCAAGGCATCTATCTGGAGCTAGCACATCATCAGGACTACCCACAAGTGTTATGTCTGCAGATGAAGATCCAAGTCTTGAGTATGATCTTTCATCTTTGCGTGAAGCTAAAGAATCAGGAGTTGTGTATCTTGTTGGTCATGGAGATGTCAAGGCTAGAAAGGATTCATGGTTTCTTAAGAAACTGGTTATAAACTACTTCTATGCTTTCATGAGGGCGAACTGCAGGGCAGGCCCTGCAAACCTCAGTGTGCCTCACACCAATCTCTTGCAGGTTAGCATGACATATACTGTCTGACTTGAAGGTTTCCATGAATCAGACATGCTGAATGTTTTTCAAGGACCAAGTCACAACATCAATATGGTGATGGATACCAAAGATTTCCTTGAAGGTGGCCGAGATGAAGTGAATTTTAATGTGAAGTTAATAATCATAAGTTCTGTTGTCGACCAAGGTCTTTCATTACTTGGTCCTTTATTTTGTTTGATAGAGAACGATAGACATTCCTACGATTAATTACTGGTATTTGTGAACATAGACACCAATTCTTTTCAATGAAGGTGATAGGTGGTATTTTATATGCCTGGTTAAGCCTAAGATAAGCCATGTTTTCTACACAGGGAAGTTATATTACGTTATATCCATGAAAACGAGAGGAAGACGACATTGCATGTTTCCTCGTATAGCTAAATCGTAATGAACAGTTATAAGCTTAGTTCACAATGTGGTAGCATTATTTTGATGGCTTATATAAGATTCCAACTTCTAAGGATTCTTCAATGGCCTGCTGTAAGAACAGATTATTTTGCTCGTGGCTCGCAAGACTTGAAAGTAAAACTAGAATAAAGCTTTTAATGTGATTGGGGTAATACAAAAATGTTTGTTT

Ace file of the UniGene sp_v3.0_unigene12477

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative potassium transporter [Vicia faba]	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Potassium transporter, putative	-	-	9.855e-40	-

Source	Gene names
Sma3	6J23.11; At1g31120; At1g60160; At1g70300; At2g30070; At2g35060; At2g40540; At3g02050; At4g13420; At4g19960; At4g23640; At4g33530; At5g09400; At5g14880; B1026C12.31-1; B1026C12.31-2; CHLREDRAFT_123407; F17M5.1; F17O7.17; F18F4.60; F1C9.17; F23F1.18; F9D16.

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	potassium:sodium symporter activity	GO:0009674	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G60160.1	Potassium transporter family protein chr1:22188330-22191395 REVERSE LENGTH=827	69%
RefSeq	Arabidopsis thaliana	NP_176222.2	putative potassium transporter 12 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002315805.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P149

Fln msg: your sequence is longer than subject: 838 - 225

Fln protein: MSGMDEQDRDGISEGSISLLSSESRWVDGSEMEGDSPRWFVDDDQSGHKIRRRLVRKTKRVDSFDVEAMEVPGARKGHDKDLSLGQTLGLAFQTLGVVYGDLGTSPLYVFTSVFSQARIKGDEDVLGALSLVMYTIALIPLAKYVFIVLKANDNGEGGTFSLYSLICRYAKVNLLPNQQPSDEKISSFKLKLPTPELERSLRIKESLERSTKLKTLLLLLVLMGTSMVIGDGILTPAISVMSAVSGLQDEISSFTEDTVVIVSIVFLVILFSIQQFGTSKVGMTFAPALLIWFFSLGSIGLYNIISHDVTVLRAFNPVYIYYFFKRNTIKAWMSLGGCVLCITGAEAMFADLGHFSVRSIQIAFTFVVFPCLLLAYMGQAAYLMKHPAVVEKVFYASIPDGLFWPVFVIATVAAMIASQAMISATFSCIKMSMALGCFPRLKIIHTSRRFMGQIYIPVMNWFLMIMCVLVCACFRSTTEISNAYGIAEVGVMMVTTSLVTLVMVLIWQKNIFLAIGFPLLFGSIELTYFSAVLMKVGEGGWLPLVFATCFLLVMYIWNYGSVLKYQSEVRKKVSMDLMLELGSNLGTIRVPGIGLVYSELVRGVPAVFGQFLTSLPAIHSIIVFVCIKYVPVPVVPQDERFLFRRICPRDYNMFRCVARYGYKDVRKEHYEAFEQLLIESLEKFLRKEALELALENESLIVDSDDESVDSKGAGPSNGFTDSLRTPLMEDQRHAQYGAPSRHLSGASTSSGLPTSVMSADEDPSLEYDLSSLREAKESGVVYLVGHGDVKARKDSWFLKKLVINYFYAFMRANCRAGPANLSVPHTNLLQVSMTYTV*

Protein Length: 839

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGATGTTGGAGTGTGTTGAGTTTGTTTCATAAGTACTGATTATCACTCTGTATAATTTTATCGGTATTAACGTGACCTCGGAGAATTTTTCTGATGGAGGAATGGGAAAACCGCTCTGATCGAAGAATGGTAACGTATTCATAGAAATCATTGGAAAAATTCATTTGGGTTTGAGGATTTTCAGGATTTCAATGGAAATCTGGATGTGGGCTGCGATGTTACGATGTGGGTCGAAGAGATTGAGCTCTTTCTTTTGCTGGATTGTGGGATTTGAATGCAGGAGCTGTTTCTGCGGATGATAAAATTATGAGTTTGAGCTCTTGCTTTTGCTGGACTGTGGTCTTTGAATGCAGAAATTGCTTCTCTGGATGATAAACTTGTGCTTTTGCTAAAACAGTTGTGGGGATTCTCCAAAGTTTCTATTGATTGCTCTTGTGCATACCGTTCTTGTCATTGTCAACCCCATTATCATATCA_-_ATGTCTGGGATGGATGAGCAAGACAGGGATGGGATCAGTGAGGGCTCAATATCTCTGCTGTCATCAGAGTCCAGGTGGGTTGATGGCAGTGAAATGGAAGGGGACTCCCCAAGGTGGTTTGTTGACGATGATCAGAGTGGACACAAAATCAGGCGCAGGCTTGTTCGGAAGACCAAGAGAGTGGATTCCTTTGATGTGGAGGCCATGGAGGTGCCTGGTGCGCGCAAGGGCCATGATAAGGACCTTTCATTAGGACAGACGCTCGGCCTGGCATTCCAAACACTTGGAGTGGTCTATGGTGATTTGGGTACCAGCCCCTTGTATGTCTTCACCAGTGTATTCAGCCAGGCTCGTATCAAAGGAGATGAAGATGTTTTGGGTGCATTATCTTTAGTGATGTACACAATAGCTCTCATCCCTTTGGCTAAATATGTGTTCATTGTGCTCAAAGCCAATGACAATGGTGAAGGGGGGACATTTTCCTTGTACTCTTTGATTTGCAGATATGCAAAGGTCAATCTGCTCCCCAACCAGCAACCATCGGATGAAAAAATTTCCAGTTTCAAGCTCAAGTTGCCCACCCCAGAGCTGGAAAGATCATTAAGAATCAAAGAAAGCCTTGAGAGAAGTACAAAATTGAAGACCCTACTGCTACTCTTGGTTCTCATGGGTACTTCCATGGTAATTGGGGATGGCATACTTACACCTGCAATATCAGTCATGTCTGCAGTGAGTGGCCTGCAAGATGAAATATCTAGCTTTACGGAAGACACAGTGGTCATTGTCTCAATCGTATTCCTGGTGATCTTGTTCAGCATACAACAGTTTGGTACAAGCAAAGTAGGCATGACATTTGCTCCAGCACTCCTGATATGGTTTTTCTCTCTTGGTTCTATTGGACTTTACAATATTATTTCACATGACGTGACAGTTTTAAGGGCATTCAATCCAGTTTATATCTATTACTTTTTCAAGAGGAACACTATCAAAGCATGGATGTCCCTAGGAGGATGCGTGCTGTGCATAACAGGAGCTGAAGCTATGTTTGCTGATTTGGGTCATTTCTCAGTAAGATCCATCCAGATAGCCTTCACATTTGTAGTATTCCCATGCCTGCTATTGGCTTACATGGGTCAAGCTGCATATCTTATGAAGCATCCAGCTGTGGTGGAGAAGGTATTCTATGCTTCAATTCCAGATGGTCTTTTCTGGCCAGTCTTCGTGATAGCCACCGTTGCTGCCATGATTGCAAGCCAGGCAATGATCTCGGCAACATTTTCATGTATTAAAATGTCCATGGCCCTAGGATGCTTTCCCAGATTGAAAATAATTCACACATCCCGGCGGTTCATGGGTCAGATCTACATTCCTGTCATGAACTGGTTCCTAATGATAATGTGTGTCTTGGTATGTGCCTGTTTTAGGAGCACCACCGAGATATCAAATGCATATGGCATTGCAGAGGTAGGGGTGATGATGGTGACTACAAGCCTAGTGACTCTTGTCATGGTTCTTATATGGCAAAAGAATATATTCCTTGCGATTGGCTTTCCTCTTCTATTTGGATCAATTGAACTGACTTATTTTTCTGCAGTTTTGATGAAAGTGGGGGAAGGTGGTTGGCTTCCACTGGTTTTTGCCACCTGCTTCCTTCTTGTGATGTACATTTGGAACTATGGAAGTGTTCTGAAGTATCAAAGTGAAGTGAGGAAAAAGGTGTCAATGGATTTGATGTTAGAATTAGGATCCAACCTTGGGACAATCCGAGTCCCAGGAATTGGGTTAGTTTATAGTGAACTTGTTCGTGGAGTACCTGCAGTTTTTGGGCAGTTTTTAACAAGCCTTCCAGCAATACATTCGATCATCGTATTTGTTTGTATAAAGTATGTACCAGTTCCTGTTGTGCCACAAGATGAGCGTTTTCTCTTTAGGAGAATTTGTCCAAGGGACTATAACATGTTTCGATGTGTGGCTAGATATGGGTACAAAGACGTTCGCAAGGAACATTATGAGGCCTTTGAACAATTACTTATTGAAAGCCTTGAGAAGTTTCTTCGAAAGGAGGCTTTAGAACTTGCCCTTGAGAATGAGAGCTTGATTGTAGACTCGGACGATGAATCAGTTGATTCTAAAGGAGCAGGACCTTCAAATGGTTTCACTGACTCTCTTAGGACACCTCTGATGGAAGACCAGAGACACGCACAATATGGTGCCCCATCAAGGCATCTATCTGGAGCTAGCACATCATCAGGACTACCCACAAGTGTTATGTCTGCAGATGAAGATCCAAGTCTTGAGTATGATCTTTCATCTTTGCGTGAAGCTAAAGAATCAGGAGTTGTGTATCTTGTTGGTCATGGAGATGTCAAGGCTAGAAAGGATTCATGGTTTCTTAAGAAACTGGTTATAAACTACTTCTATGCTTTCATGAGGGCGAACTGCAGGGCAGGCCCTGCAAACCTCAGTGTGCCTCACACCAATCTCTTGCAGGTTAGCATGACATATACTGTCTGA___CTTGAAGGTTTCCATGAATCAGACATGCTGAATGTTTTTCAAGGACCAAGTCACAACATCAATATGGTGATGGATACCAAAGATTTCCTTGAAGGTGGCCGAGATGAAGTGAATTTTAATGTGAAGTTAATAATCATAAGTTCTGTTGTCGACCAAGGTCTTTCATTACTTGGTCCTTTATTTTGTTTGATAGAGAACGATAGACATTCCTACGATTAATTACTGGTATTTGTGAACATAGACACCAATTCTTTTCAATGAAGGTGATAGGTGGTATTTTATATGCCTGGTTAAGCCTAAGATAAGCCATGTTTTCTACACAGGGAAGTTATATTACGTTATATCCATGAAAACGAGAGGAAGACGACATTGCATGTTTCCTCGTATAGCTAAATCGTAATGAACAGTTATAAGCTTAGTTCACAATGTGGTAGCATTATTTTGATGGCTTATATAAGATTCCAACTTCTAAGGATTCTTCAATGGCCTGCTGTAAGAACAGATTATTTTGCTCGTGGCTCGCAAGACTTGAAAGTAAAACTAGAATAAAGCTTTTAATGTGATTGGGGTAATACAAAAATGTTTGTTT

Fln Alignment:

Contig12477___KDLSLGQTLGLAFQTLGVVYGDLGTSPLYVFTSVFSQARIKGDEDVLGALSLVMYTIALIPLAKYVFIVLKANDNGEGGTFSLYSLICRYAKVNLLPNQQPSDEKISSFKLKLPTPELERSLRIKESLERSXXXXXXXXXXXXMGTSMVIGDGILTPAISVMSAVSGL
A9P149_______________KELSALMILRLAFHSFGVVYGDLGTSPLYVFSSTFPDG-IQDSEDVMGALSLIIYTLTLIPLLKYVFVVMRANDNGEGGTFALYSLLCRHAKVNTIPNQDRTDEELTTYS-RQTIKDKSFAARTKKWLEGKVYRKNALLLLVLIGTCMVIGDGIFTPAISGHASLSSI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
181		50	50		1.0
325		66		33	1.0
2827		33		66	1.0
3118			83	16	0.994512
3144	16			83	0.994512
3214		20		80	0.995493
3269	80		20		0.995493
3309	33			66	1.0
3372	33	66			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain